Wall clock time and date at job start Tue Mar 31 2020 18:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21258 * 119.99826 * 2 1 4 4 C 1.47185 * 120.00356 * 180.02562 * 2 1 3 5 5 C 1.39886 * 120.13545 * 359.96827 * 4 2 1 6 6 C 1.37913 * 119.96556 * 180.02562 * 5 4 2 7 7 C 1.38298 * 120.24904 * 359.74586 * 6 5 4 8 8 C 1.38989 * 120.28066 * 0.51975 * 7 6 5 9 9 N 1.39953 * 119.98355 * 179.76263 * 8 7 6 10 10 C 1.34778 * 119.99673 * 214.82089 * 9 8 7 11 11 O 1.21290 * 120.00044 * 355.38307 * 10 9 8 12 12 C 1.50701 * 120.00032 * 175.38163 * 10 9 8 13 13 H 1.09004 * 109.46937 * 55.00277 * 12 10 9 14 14 C 1.53000 * 109.47221 * 295.00522 * 12 10 9 15 15 O 1.45204 * 109.47253 * 175.00120 * 12 10 9 16 16 C 1.34224 * 116.99862 * 210.00062 * 15 12 10 17 17 O 1.20829 * 120.00478 * 0.02562 * 16 15 12 18 18 C 1.50703 * 119.99868 * 180.02562 * 16 15 12 19 19 H 1.09003 * 109.46841 * 299.99690 * 18 16 15 20 20 C 1.52997 * 109.47246 * 59.99651 * 18 16 15 21 21 C 1.50699 * 109.47020 * 180.02562 * 18 16 15 22 22 H 1.07996 * 120.00290 * 359.97438 * 21 18 16 23 23 C 1.37887 * 119.99719 * 179.97438 * 21 18 16 24 24 N 1.31512 * 119.99613 * 179.97438 * 23 21 18 25 25 Si 1.86794 * 120.00118 * 359.97438 * 23 21 18 26 26 H 1.48501 * 109.47324 * 89.99907 * 25 23 21 27 27 H 1.48493 * 109.47152 * 210.00007 * 25 23 21 28 28 H 1.48503 * 109.46913 * 330.00001 * 25 23 21 29 29 C 1.38570 * 120.02667 * 359.47744 * 8 7 6 30 30 H 1.09003 * 109.46953 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47283 * 299.99586 * 1 2 3 32 32 H 1.08999 * 109.47639 * 60.00188 * 1 2 3 33 33 H 1.08001 * 120.01752 * 0.02562 * 5 4 2 34 34 H 1.07999 * 119.87075 * 180.02562 * 6 5 4 35 35 H 1.08003 * 119.85564 * 180.25218 * 7 6 5 36 36 H 0.97005 * 120.00674 * 34.82711 * 9 8 7 37 37 H 1.08995 * 109.47525 * 59.99742 * 14 12 10 38 38 H 1.09001 * 109.47282 * 180.02562 * 14 12 10 39 39 H 1.09004 * 109.46965 * 299.99738 * 14 12 10 40 40 H 1.09005 * 109.46980 * 180.02562 * 20 18 16 41 41 H 1.08991 * 109.47249 * 300.00087 * 20 18 16 42 42 H 1.09003 * 109.47168 * 60.00239 * 20 18 16 43 43 H 0.97000 * 119.99620 * 179.97438 * 24 23 21 44 44 H 1.07997 * 120.12192 * 180.23608 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 1.5465 -2.4878 -0.0004 6 6 2.2397 -3.6800 -0.0004 7 6 3.6226 -3.6819 -0.0059 8 6 4.3251 -2.4826 -0.0005 9 7 5.7246 -2.4917 -0.0010 10 6 6.4049 -1.5410 0.6698 11 8 5.8075 -0.6304 1.2036 12 6 7.9078 -1.6094 0.7565 13 1 8.3274 -1.6672 -0.2479 14 6 8.3168 -2.8506 1.5522 15 8 8.4089 -0.4205 1.4227 16 6 9.6315 0.0063 1.0696 17 8 10.2620 -0.5933 0.2312 18 6 10.2178 1.2335 1.7187 19 1 9.5731 2.0907 1.5240 20 6 10.3261 1.0095 3.2283 21 6 11.5881 1.4967 1.1497 22 1 11.9941 0.8407 0.3939 23 6 12.3237 2.5750 1.5940 24 7 13.5198 2.8044 1.0978 25 14 11.6212 3.7100 2.9007 26 1 12.0029 3.2116 4.2465 27 1 12.1612 5.0799 2.7087 28 1 10.1409 3.7408 2.7858 29 6 3.6403 -1.2779 -0.0006 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.4665 -2.4907 -0.0003 34 1 1.7004 -4.6157 -0.0008 35 1 4.1590 -4.6193 -0.0100 36 1 6.2050 -3.1821 -0.4841 37 1 7.9408 -3.7430 1.0521 38 1 9.4039 -2.8998 1.6153 39 1 7.8972 -2.7928 2.5565 40 1 10.7498 1.8973 3.6979 41 1 9.3348 0.8194 3.6395 42 1 10.9708 0.1523 3.4231 43 1 14.0370 3.5632 1.4101 44 1 4.1846 -0.3451 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771773891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:09 Heat of formation + Delta-G solvation = -120.431241 kcal Electronic energy + Delta-G solvation = -27936.648932 eV Core-core repulsion = 23819.991635 eV Total energy + Delta-G solvation = -4116.657297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09031 -40.12277 -39.45091 -38.19746 -36.03214 -35.14040 -34.02359 -32.41206 -31.85885 -31.22627 -30.53938 -29.06860 -25.29325 -25.18475 -24.22571 -23.80199 -22.56992 -20.66691 -20.27470 -19.77916 -18.11640 -17.37487 -17.25901 -16.73709 -16.23075 -16.03343 -15.90638 -15.56382 -15.30284 -15.21912 -15.13287 -14.51888 -14.28538 -14.01954 -13.84556 -13.39751 -13.11435 -13.01465 -12.83182 -12.64440 -12.45703 -12.41541 -12.26298 -12.22959 -11.86689 -11.68652 -11.47083 -11.08328 -10.77504 -10.71668 -10.45785 -10.40023 -10.03568 -9.83029 -9.67936 -9.34976 -9.31997 -9.18283 -8.64624 -8.58129 -6.13145 -4.16099 0.29669 0.94179 2.02194 2.29886 2.40355 3.03873 3.24000 3.35275 3.36726 3.39444 3.44188 3.72439 4.31476 4.33940 4.42584 4.54731 4.61729 4.76321 4.77441 4.91302 4.96072 5.05473 5.07848 5.17008 5.22366 5.23659 5.45750 5.56173 5.57298 5.73248 5.87217 5.91930 5.96031 5.98279 6.06278 6.16375 6.31441 6.39482 6.57343 6.70195 6.91971 7.00986 7.08973 7.26423 7.45612 7.81360 8.36930 8.60734 9.00713 9.43760 10.98929 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016868 B = 0.002586 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.501058 B =10824.715917 C =12011.011277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.390 3.610 3 O -0.448 6.448 4 C -0.154 4.154 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.139 3.861 9 N -0.674 5.674 10 C 0.517 3.483 11 O -0.488 6.488 12 C 0.068 3.932 13 H 0.111 0.889 14 C -0.163 4.163 15 O -0.337 6.337 16 C 0.476 3.524 17 O -0.500 6.500 18 C 0.027 3.973 19 H 0.067 0.933 20 C -0.146 4.146 21 C -0.519 4.519 22 H 0.095 0.905 23 C 0.076 3.924 24 N -0.891 5.891 25 Si 0.881 3.119 26 H -0.275 1.275 27 H -0.293 1.293 28 H -0.263 1.263 29 C -0.065 4.065 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.267 0.733 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.257 -16.832 -1.787 31.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.268 3.732 3 O -0.322 6.322 4 C -0.155 4.155 5 C -0.112 4.112 6 C -0.132 4.132 7 C -0.135 4.135 8 C 0.045 3.955 9 N -0.322 5.322 10 C 0.304 3.696 11 O -0.359 6.359 12 C 0.009 3.991 13 H 0.129 0.871 14 C -0.220 4.220 15 O -0.255 6.255 16 C 0.319 3.681 17 O -0.385 6.385 18 C 0.007 3.993 19 H 0.084 0.916 20 C -0.204 4.204 21 C -0.556 4.556 22 H 0.113 0.887 23 C -0.126 4.126 24 N -0.528 5.528 25 Si 0.711 3.289 26 H -0.202 1.202 27 H -0.220 1.220 28 H -0.188 1.188 29 C -0.085 4.085 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.251 0.749 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -25.919 -15.653 -1.627 30.322 hybrid contribution 0.071 0.014 0.366 0.373 sum -25.847 -15.639 -1.261 30.237 Atomic orbital electron populations 1.22231 0.93617 1.04736 1.05071 1.22517 0.91669 0.87627 0.71436 1.90604 1.71994 1.34220 1.35414 1.20463 0.93908 0.95133 1.06044 1.21484 1.00195 0.91384 0.98129 1.20911 0.93340 0.98302 1.00681 1.21172 0.94746 0.96597 1.01010 1.17648 0.82633 0.93824 1.01368 1.43411 1.04377 1.31833 1.52574 1.20633 0.89635 0.81594 0.77763 1.90777 1.69652 1.32029 1.43457 1.22173 0.89698 0.87002 1.00270 0.87114 1.22138 1.04158 0.94646 1.01083 1.86774 1.35371 1.41409 1.61931 1.24750 0.77301 0.85975 0.80073 1.90537 1.59926 1.56428 1.31641 1.19170 0.98168 0.88769 0.93152 0.91585 1.22096 1.00317 1.01782 0.96170 1.20890 0.97144 1.13271 1.24336 0.88712 1.24897 0.94607 0.96860 0.96278 1.69861 1.10742 1.29319 1.42865 0.86943 0.80093 0.79836 0.82063 1.20179 1.22026 1.18781 1.21675 0.93268 0.98855 0.94736 0.89787 0.88692 0.88725 0.84701 0.84862 0.85019 0.74932 0.90711 0.89954 0.90915 0.92903 0.93493 0.92345 0.92293 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 10.19 36.00 0.37 -0.80 16 2 C 0.39 4.20 7.23 -30.68 -0.22 3.98 16 3 O -0.45 -6.91 17.09 5.58 0.10 -6.81 16 4 C -0.15 -1.60 5.87 -105.09 -0.62 -2.21 16 5 C -0.09 -0.63 9.45 -39.08 -0.37 -1.00 16 6 C -0.11 -0.68 10.02 -39.68 -0.40 -1.08 16 7 C -0.11 -0.82 9.96 -39.28 -0.39 -1.21 16 8 C 0.14 1.45 6.29 -83.75 -0.53 0.92 16 9 N -0.67 -6.71 5.30 -9.90 -0.05 -6.76 16 10 C 0.52 7.36 7.02 -10.98 -0.08 7.28 16 11 O -0.49 -9.00 13.94 -14.06 -0.20 -9.20 16 12 C 0.07 1.00 2.98 -27.88 -0.08 0.92 16 13 H 0.11 1.57 7.16 -51.93 -0.37 1.20 16 14 C -0.16 -1.86 9.50 37.16 0.35 -1.50 16 15 O -0.34 -6.60 9.32 -45.87 -0.43 -7.03 16 16 C 0.48 10.72 7.22 36.01 0.26 10.98 16 17 O -0.50 -12.07 14.68 -18.75 -0.28 -12.35 16 18 C 0.03 0.65 2.33 -92.92 -0.22 0.44 16 19 H 0.07 1.60 7.20 -51.93 -0.37 1.23 16 20 C -0.15 -3.18 8.61 37.16 0.32 -2.86 16 21 C -0.52 -14.89 8.96 -34.44 -0.31 -15.20 16 22 H 0.09 3.03 7.00 -52.49 -0.37 2.66 16 23 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 24 N -0.89 -27.22 13.96 55.43 0.77 -26.44 16 25 Si 0.88 21.54 24.37 -169.99 -4.14 17.39 16 26 H -0.27 -6.46 6.87 56.52 0.39 -6.07 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 29 C -0.07 -0.84 8.24 -38.90 -0.32 -1.16 16 30 H 0.08 0.27 5.60 -51.93 -0.29 -0.02 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.14 0.48 5.92 -52.49 -0.31 0.17 16 34 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 35 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.41 2.55 8.77 -40.82 -0.36 2.19 16 37 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.17 3.28 -51.93 -0.17 1.00 16 41 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.15 2.48 5.81 -52.49 -0.30 2.18 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -37.55 370.53 -6.50 -44.04 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.53 Total: 1.97 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.33 Total: -0.41 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.72 Total: -33.20 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.80 Total: -35.39 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.55 -6.50 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771773891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.387 kcal (2) G-P(sol) polarization free energy of solvation -37.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds