Wall clock time and date at job start Tue Mar 31 2020 18:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21258 * 119.99826 * 2 1 4 4 C 1.47185 * 120.00356 * 180.02562 * 2 1 3 5 5 C 1.39886 * 120.13545 * 359.96827 * 4 2 1 6 6 C 1.37913 * 119.96556 * 180.02562 * 5 4 2 7 7 C 1.38298 * 120.24904 * 359.74586 * 6 5 4 8 8 C 1.38989 * 120.28066 * 0.51975 * 7 6 5 9 9 N 1.39953 * 119.98355 * 179.76263 * 8 7 6 10 10 C 1.34778 * 119.99673 * 214.82089 * 9 8 7 11 11 O 1.21290 * 120.00044 * 355.38307 * 10 9 8 12 12 C 1.50701 * 120.00032 * 175.38163 * 10 9 8 13 13 H 1.09004 * 109.46937 * 55.00277 * 12 10 9 14 14 C 1.53000 * 109.47221 * 295.00522 * 12 10 9 15 15 O 1.45204 * 109.47253 * 175.00120 * 12 10 9 16 16 C 1.34224 * 116.99862 * 210.00062 * 15 12 10 17 17 O 1.20829 * 120.00478 * 0.02562 * 16 15 12 18 18 C 1.50703 * 119.99868 * 180.02562 * 16 15 12 19 19 H 1.09003 * 109.46841 * 299.99690 * 18 16 15 20 20 C 1.52997 * 109.47246 * 59.99651 * 18 16 15 21 21 C 1.50699 * 109.47020 * 180.02562 * 18 16 15 22 22 H 1.07996 * 120.00290 * 359.97438 * 21 18 16 23 23 C 1.37887 * 119.99719 * 179.97438 * 21 18 16 24 24 N 1.31512 * 119.99613 * 179.97438 * 23 21 18 25 25 Si 1.86794 * 120.00118 * 359.97438 * 23 21 18 26 26 H 1.48501 * 109.47324 * 89.99907 * 25 23 21 27 27 H 1.48493 * 109.47152 * 210.00007 * 25 23 21 28 28 H 1.48503 * 109.46913 * 330.00001 * 25 23 21 29 29 C 1.38570 * 120.02667 * 359.47744 * 8 7 6 30 30 H 1.09003 * 109.46953 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47283 * 299.99586 * 1 2 3 32 32 H 1.08999 * 109.47639 * 60.00188 * 1 2 3 33 33 H 1.08001 * 120.01752 * 0.02562 * 5 4 2 34 34 H 1.07999 * 119.87075 * 180.02562 * 6 5 4 35 35 H 1.08003 * 119.85564 * 180.25218 * 7 6 5 36 36 H 0.97005 * 120.00674 * 34.82711 * 9 8 7 37 37 H 1.08995 * 109.47525 * 59.99742 * 14 12 10 38 38 H 1.09001 * 109.47282 * 180.02562 * 14 12 10 39 39 H 1.09004 * 109.46965 * 299.99738 * 14 12 10 40 40 H 1.09005 * 109.46980 * 180.02562 * 20 18 16 41 41 H 1.08991 * 109.47249 * 300.00087 * 20 18 16 42 42 H 1.09003 * 109.47168 * 60.00239 * 20 18 16 43 43 H 0.97000 * 119.99620 * 179.97438 * 24 23 21 44 44 H 1.07997 * 120.12192 * 180.23608 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 1.5465 -2.4878 -0.0004 6 6 2.2397 -3.6800 -0.0004 7 6 3.6226 -3.6819 -0.0059 8 6 4.3251 -2.4826 -0.0005 9 7 5.7246 -2.4917 -0.0010 10 6 6.4049 -1.5410 0.6698 11 8 5.8075 -0.6304 1.2036 12 6 7.9078 -1.6094 0.7565 13 1 8.3274 -1.6672 -0.2479 14 6 8.3168 -2.8506 1.5522 15 8 8.4089 -0.4205 1.4227 16 6 9.6315 0.0063 1.0696 17 8 10.2620 -0.5933 0.2312 18 6 10.2178 1.2335 1.7187 19 1 9.5731 2.0907 1.5240 20 6 10.3261 1.0095 3.2283 21 6 11.5881 1.4967 1.1497 22 1 11.9941 0.8407 0.3939 23 6 12.3237 2.5750 1.5940 24 7 13.5198 2.8044 1.0978 25 14 11.6212 3.7100 2.9007 26 1 12.0029 3.2116 4.2465 27 1 12.1612 5.0799 2.7087 28 1 10.1409 3.7408 2.7858 29 6 3.6403 -1.2779 -0.0006 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.4665 -2.4907 -0.0003 34 1 1.7004 -4.6157 -0.0008 35 1 4.1590 -4.6193 -0.0100 36 1 6.2050 -3.1821 -0.4841 37 1 7.9408 -3.7430 1.0521 38 1 9.4039 -2.8998 1.6153 39 1 7.8972 -2.7928 2.5565 40 1 10.7498 1.8973 3.6979 41 1 9.3348 0.8194 3.6395 42 1 10.9708 0.1523 3.4231 43 1 14.0370 3.5632 1.4101 44 1 4.1846 -0.3451 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771773891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:08 Heat of formation + Delta-G solvation = -146.995578 kcal Electronic energy + Delta-G solvation = -27937.800848 eV Core-core repulsion = 23819.991635 eV Total energy + Delta-G solvation = -4117.809213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.17792 -41.41958 -40.56698 -39.09795 -37.63736 -36.11277 -36.01784 -33.75708 -33.10776 -32.53147 -31.26927 -29.72735 -27.24177 -26.47637 -25.30403 -24.90046 -23.59160 -21.84402 -21.38342 -21.02974 -19.19580 -18.96096 -18.52743 -18.13198 -17.57962 -17.29548 -17.03021 -16.67562 -16.56475 -16.23859 -16.08965 -16.05588 -15.29440 -15.12866 -14.90381 -14.68421 -14.49358 -14.34655 -14.06974 -13.76790 -13.61076 -13.36648 -13.29222 -13.06288 -13.02179 -12.83459 -12.74936 -12.64933 -12.42389 -12.29902 -11.97352 -11.61796 -11.57652 -11.34022 -11.21638 -10.93620 -10.82632 -10.81210 -10.01353 -9.33079 -8.36113 -6.45704 -0.39663 0.21587 1.13625 1.17119 1.26553 1.31524 1.37163 1.46750 1.46887 2.12125 2.27408 2.77656 2.96839 3.02595 3.32654 3.66764 3.77627 3.87714 3.89679 4.02161 4.05676 4.19969 4.30656 4.40211 4.42270 4.48045 4.48966 4.58834 4.63049 4.64837 4.71793 4.91064 4.92157 5.01335 5.06823 5.20563 5.22594 5.27450 5.29911 5.34095 5.39391 5.41317 5.89924 6.13491 6.17371 6.51565 6.65357 6.81661 6.86872 7.18928 8.80119 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016868 B = 0.002586 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.501058 B =10824.715917 C =12011.011277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.384 3.616 3 O -0.516 6.516 4 C -0.180 4.180 5 C -0.073 4.073 6 C -0.105 4.105 7 C -0.097 4.097 8 C 0.113 3.887 9 N -0.651 5.651 10 C 0.520 3.480 11 O -0.540 6.540 12 C 0.058 3.942 13 H 0.114 0.886 14 C -0.155 4.155 15 O -0.344 6.344 16 C 0.483 3.517 17 O -0.526 6.526 18 C 0.018 3.982 19 H 0.069 0.931 20 C -0.139 4.139 21 C -0.529 4.529 22 H 0.045 0.955 23 C 0.022 3.978 24 N -0.939 5.939 25 Si 0.947 3.053 26 H -0.253 1.253 27 H -0.293 1.293 28 H -0.245 1.245 29 C -0.103 4.103 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.433 0.567 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.272 0.728 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.173 -20.245 -0.606 36.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.266 3.734 3 O -0.395 6.395 4 C -0.182 4.182 5 C -0.091 4.091 6 C -0.123 4.123 7 C -0.117 4.117 8 C 0.020 3.980 9 N -0.300 5.300 10 C 0.307 3.693 11 O -0.415 6.415 12 C 0.000 4.000 13 H 0.132 0.868 14 C -0.213 4.213 15 O -0.261 6.261 16 C 0.327 3.673 17 O -0.414 6.414 18 C -0.002 4.002 19 H 0.086 0.914 20 C -0.196 4.196 21 C -0.567 4.567 22 H 0.064 0.936 23 C -0.177 4.177 24 N -0.578 5.578 25 Si 0.772 3.228 26 H -0.178 1.178 27 H -0.220 1.220 28 H -0.169 1.169 29 C -0.124 4.124 30 H 0.138 0.862 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.194 0.806 34 H 0.197 0.803 35 H 0.186 0.814 36 H 0.274 0.726 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -29.885 -19.158 -0.467 35.501 hybrid contribution 1.171 0.876 -0.147 1.469 sum -28.714 -18.282 -0.614 34.046 Atomic orbital electron populations 1.22276 0.89345 1.07340 1.05761 1.23455 0.94070 0.86962 0.68915 1.90580 1.73680 1.36322 1.38947 1.20651 0.93111 0.96693 1.07701 1.21959 1.02151 0.89940 0.95062 1.21517 0.92936 0.99674 0.98188 1.21619 0.95578 0.96255 0.98223 1.17856 0.82354 0.94402 1.03387 1.43112 1.04670 1.30916 1.51256 1.20530 0.89235 0.81772 0.77763 1.90779 1.70397 1.34213 1.46138 1.22651 0.90182 0.86397 1.00758 0.86801 1.22170 1.03336 0.94523 1.01230 1.86680 1.33581 1.43637 1.62155 1.24250 0.78040 0.85500 0.79462 1.90519 1.60953 1.57243 1.32665 1.19089 0.95879 0.90030 0.95186 0.91361 1.21996 1.02133 1.01850 0.93662 1.20957 0.99329 1.12774 1.23631 0.93640 1.25796 0.94705 0.98478 0.98717 1.70009 1.12522 1.30434 1.44862 0.85880 0.80235 0.77118 0.79587 1.17827 1.21986 1.16903 1.21491 0.94818 0.98053 0.98014 0.86182 0.88018 0.87729 0.80640 0.80304 0.81354 0.72622 0.85978 0.91346 0.90730 0.92976 0.90601 0.92098 0.91929 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 10.19 71.24 0.73 -1.10 16 2 C 0.38 8.54 7.23 28.04 0.20 8.74 16 3 O -0.52 -17.64 17.09 -2.96 -0.05 -17.69 16 4 C -0.18 -3.66 5.87 -20.17 -0.12 -3.78 16 5 C -0.07 -0.68 9.45 22.59 0.21 -0.47 16 6 C -0.11 -0.67 10.02 22.21 0.22 -0.44 16 7 C -0.10 -0.96 9.96 22.46 0.22 -0.74 16 8 C 0.11 2.24 6.29 38.10 0.24 2.48 16 9 N -0.65 -12.37 5.30 -303.61 -1.61 -13.98 16 10 C 0.52 15.14 7.02 87.66 0.62 15.76 16 11 O -0.54 -21.27 13.94 15.69 0.22 -21.06 16 12 C 0.06 1.73 2.98 29.85 0.09 1.82 16 13 H 0.11 3.29 7.16 -2.39 -0.02 3.28 16 14 C -0.16 -3.31 9.50 71.98 0.68 -2.62 16 15 O -0.34 -13.75 9.32 -45.02 -0.42 -14.17 16 16 C 0.48 22.47 7.22 71.24 0.51 22.98 16 17 O -0.53 -26.55 14.68 21.96 0.32 -26.23 16 18 C 0.02 0.87 2.33 -12.29 -0.03 0.84 16 19 H 0.07 3.35 7.20 -2.39 -0.02 3.33 16 20 C -0.14 -5.89 8.61 71.98 0.62 -5.27 16 21 C -0.53 -31.66 8.96 25.60 0.23 -31.43 16 22 H 0.05 3.10 7.00 -2.91 -0.02 3.08 16 23 C 0.02 1.27 5.45 84.66 0.46 1.73 16 24 N -0.94 -59.47 13.96 21.45 0.30 -59.17 16 25 Si 0.95 44.44 24.37 68.60 1.67 46.11 16 26 H -0.25 -10.96 6.87 99.48 0.68 -10.28 16 27 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.25 -10.74 6.53 99.48 0.65 -10.09 16 29 C -0.10 -2.81 8.24 22.71 0.19 -2.62 16 30 H 0.12 0.20 5.60 -2.39 -0.01 0.19 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.18 0.14 5.92 -2.91 -0.02 0.12 16 34 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 16 35 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 36 H 0.43 4.33 8.77 -92.70 -0.81 3.52 16 37 H 0.12 1.40 8.08 -2.39 -0.02 1.38 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 2.20 3.28 -2.38 -0.01 2.19 16 41 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 42 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.10 3.77 5.81 -2.91 -0.02 3.76 16 Total: -1.00 -93.11 370.53 5.68 -87.43 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.16 Total: 12.87 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.08 Total: 5.87 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.31 Total: -73.15 kcal Atomic # 8 Polarization: -79.21 SS G_CDS: 0.07 Total: -79.14 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.67 Total: 46.11 kcal Total: -93.11 5.68 -87.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771773891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.567 kcal (2) G-P(sol) polarization free energy of solvation -93.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds