Wall clock time and date at job start Tue Mar 31 2020 18:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21244 * 120.00393 * 2 1 4 4 C 1.47192 * 119.99624 * 179.97438 * 2 1 3 5 5 C 1.39893 * 120.13928 * 359.97438 * 4 2 1 6 6 C 1.37906 * 119.96516 * 180.02562 * 5 4 2 7 7 C 1.38299 * 120.25164 * 359.73608 * 6 5 4 8 8 C 1.38987 * 120.28098 * 0.52252 * 7 6 5 9 9 N 1.39962 * 119.98834 * 179.76186 * 8 7 6 10 10 C 1.34774 * 119.99989 * 214.82004 * 9 8 7 11 11 O 1.21291 * 120.00056 * 355.39628 * 10 9 8 12 12 C 1.50697 * 119.99831 * 175.39009 * 10 9 8 13 13 H 1.09001 * 109.47432 * 305.00192 * 12 10 9 14 14 C 1.53000 * 109.46859 * 65.00605 * 12 10 9 15 15 O 1.45205 * 109.47389 * 185.00287 * 12 10 9 16 16 C 1.34225 * 117.00303 * 149.99646 * 15 12 10 17 17 O 1.20823 * 119.99781 * 0.02562 * 16 15 12 18 18 C 1.50696 * 120.00020 * 179.97438 * 16 15 12 19 19 H 1.08997 * 109.47217 * 60.00939 * 18 16 15 20 20 C 1.53004 * 109.47417 * 300.00640 * 18 16 15 21 21 C 1.50702 * 109.47275 * 180.02562 * 18 16 15 22 22 H 1.08006 * 119.99516 * 0.02562 * 21 18 16 23 23 C 1.37872 * 120.00223 * 179.97438 * 21 18 16 24 24 N 1.31516 * 120.00178 * 0.02562 * 23 21 18 25 25 Si 1.86799 * 120.00156 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47004 * 60.00270 * 25 23 21 27 27 H 1.48496 * 109.47398 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47155 * 300.00805 * 25 23 21 29 29 C 1.38569 * 120.02809 * 359.47785 * 8 7 6 30 30 H 1.08998 * 109.47197 * 269.99919 * 1 2 3 31 31 H 1.09003 * 109.46840 * 30.00016 * 1 2 3 32 32 H 1.09000 * 109.47615 * 149.99568 * 1 2 3 33 33 H 1.07992 * 120.01469 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.87381 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.85937 * 180.25347 * 7 6 5 36 36 H 0.97004 * 119.99662 * 34.82309 * 9 8 7 37 37 H 1.09000 * 109.46897 * 299.99677 * 14 12 10 38 38 H 1.08998 * 109.47331 * 60.00120 * 14 12 10 39 39 H 1.09007 * 109.46740 * 179.97438 * 14 12 10 40 40 H 1.08997 * 109.47175 * 299.99770 * 20 18 16 41 41 H 1.08996 * 109.46894 * 59.99997 * 20 18 16 42 42 H 1.09002 * 109.47090 * 180.02562 * 20 18 16 43 43 H 0.97000 * 120.00087 * 179.97438 * 24 23 21 44 44 H 1.07999 * 120.12847 * 180.23926 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2428 -1.2748 0.0006 5 6 1.5462 -2.4879 0.0017 6 6 2.2393 -3.6802 0.0027 7 6 3.6223 -3.6821 -0.0028 8 6 4.3248 -2.4829 0.0015 9 7 5.7244 -2.4921 0.0009 10 6 6.4048 -1.5409 0.6708 11 8 5.8075 -0.6299 1.2041 12 6 7.9077 -1.6093 0.7572 13 1 8.2047 -2.5752 1.1658 14 6 8.5071 -1.4405 -0.6403 15 8 8.3916 -0.5484 1.6227 16 6 9.5245 -0.7855 2.3024 17 8 10.0933 -1.8442 2.1781 18 6 10.0875 0.2692 3.2197 19 1 9.3587 0.5023 3.9960 20 6 10.3970 1.5330 2.4147 21 6 11.3537 -0.2428 3.8566 22 1 11.7148 -1.2329 3.6202 23 6 12.0517 0.5529 4.7400 24 7 11.6123 1.7587 5.0274 25 14 13.6217 -0.0815 5.5288 26 1 14.6141 -0.3987 4.4707 27 1 14.1764 0.9577 6.4328 28 1 13.3222 -1.3083 6.3103 29 6 3.6402 -1.2782 0.0004 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 0.4663 -2.4908 0.0025 34 1 1.7000 -4.6159 0.0031 35 1 4.1586 -4.6196 -0.0061 36 1 6.2047 -3.1831 -0.4816 37 1 8.1439 -2.2369 -1.2900 38 1 8.2103 -0.4745 -1.0488 39 1 9.5943 -1.4895 -0.5777 40 1 11.1259 1.3000 1.6385 41 1 9.4813 1.9035 1.9539 42 1 10.8047 2.2957 3.0782 43 1 12.1032 2.3184 5.6492 44 1 4.1845 -0.3454 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771773893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:15 Heat of formation + Delta-G solvation = -131.918799 kcal Electronic energy + Delta-G solvation = -27842.889326 eV Core-core repulsion = 23725.733891 eV Total energy + Delta-G solvation = -4117.155435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02364 -40.02488 -39.35684 -38.14264 -35.89621 -35.07678 -33.90975 -32.33892 -31.78243 -30.65887 -30.32955 -29.02763 -25.26195 -25.09362 -24.17126 -23.55189 -22.47090 -20.59596 -20.22610 -19.72282 -18.06760 -17.34632 -16.99972 -16.59292 -16.12113 -15.88656 -15.68418 -15.46414 -15.38134 -15.20840 -14.82812 -14.53644 -14.18626 -13.98820 -13.68620 -13.23505 -13.07694 -12.77868 -12.73586 -12.52477 -12.41201 -12.37985 -12.23392 -11.87229 -11.56415 -11.43151 -11.04583 -10.83828 -10.70495 -10.69729 -10.44436 -10.29815 -10.06805 -10.01184 -9.75355 -9.28867 -9.20919 -9.05453 -8.52782 -8.44774 -6.09908 -4.16326 0.33896 0.98927 2.06396 2.36379 2.48834 3.20016 3.32352 3.35375 3.38123 3.48540 3.53942 3.76734 4.37520 4.41134 4.49134 4.61211 4.69566 4.79940 4.85639 4.96287 5.00137 5.07570 5.13081 5.22956 5.24721 5.31354 5.49600 5.61066 5.64290 5.90200 5.93422 5.98321 6.02225 6.07703 6.13257 6.62033 6.68522 6.87318 6.88251 7.01213 7.13069 7.29347 7.43910 7.74637 7.87762 7.94409 8.13149 8.74748 8.91382 9.49018 10.97366 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019555 B = 0.002346 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.514861 B =11932.544484 C =12632.792193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.391 3.609 3 O -0.448 6.448 4 C -0.155 4.155 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.139 3.861 9 N -0.675 5.675 10 C 0.517 3.483 11 O -0.486 6.486 12 C 0.067 3.933 13 H 0.109 0.891 14 C -0.164 4.164 15 O -0.335 6.335 16 C 0.468 3.532 17 O -0.516 6.516 18 C 0.060 3.940 19 H 0.066 0.934 20 C -0.134 4.134 21 C -0.515 4.515 22 H 0.075 0.925 23 C 0.062 3.938 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.276 1.276 29 C -0.065 4.065 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.031 0.969 41 H 0.025 0.975 42 H 0.097 0.903 43 H 0.264 0.736 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.216 -11.235 -14.296 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.268 3.732 3 O -0.322 6.322 4 C -0.156 4.156 5 C -0.111 4.111 6 C -0.132 4.132 7 C -0.136 4.136 8 C 0.045 3.955 9 N -0.323 5.323 10 C 0.303 3.697 11 O -0.357 6.357 12 C 0.008 3.992 13 H 0.127 0.873 14 C -0.221 4.221 15 O -0.253 6.253 16 C 0.313 3.687 17 O -0.403 6.403 18 C 0.041 3.959 19 H 0.084 0.916 20 C -0.192 4.192 21 C -0.552 4.552 22 H 0.093 0.907 23 C -0.140 4.140 24 N -0.529 5.529 25 Si 0.734 3.266 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.201 1.201 29 C -0.085 4.085 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.023 -10.137 -13.802 27.115 hybrid contribution 1.074 -1.040 0.204 1.509 sum -19.950 -11.177 -13.598 26.605 Atomic orbital electron populations 1.22226 0.93596 1.04848 1.04867 1.22514 0.91664 0.87606 0.71440 1.90594 1.72048 1.34208 1.35364 1.20461 0.93921 0.95099 1.06140 1.21435 1.00163 0.91372 0.98170 1.20906 0.93330 0.98311 1.00678 1.21183 0.94767 0.96647 1.00993 1.17660 0.82679 0.93835 1.01296 1.43433 1.04344 1.31733 1.52792 1.20669 0.89651 0.81641 0.77712 1.90781 1.69668 1.32083 1.43197 1.22152 0.89382 0.94641 0.93072 0.87314 1.22146 1.03204 1.03319 0.93439 1.86830 1.42267 1.41815 1.54349 1.25597 0.76084 0.89693 0.77361 1.90480 1.59009 1.27541 1.63251 1.18793 0.96898 0.89047 0.91185 0.91589 1.21741 0.98587 0.99546 0.99315 1.21071 1.06678 1.02219 1.25282 0.90669 1.24945 0.98083 0.94785 0.96178 1.69877 1.39667 1.08505 1.34821 0.86418 0.82695 0.78423 0.79088 1.20086 1.21195 1.20101 1.21668 0.93248 0.98811 0.94793 0.88375 0.89360 0.89527 0.84835 0.84886 0.85038 0.75025 0.90893 0.90831 0.90027 0.94974 0.95553 0.88477 0.92565 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 9.75 36.00 0.35 -0.84 16 2 C 0.39 4.27 7.23 -30.68 -0.22 4.04 16 3 O -0.45 -6.92 17.09 5.59 0.10 -6.83 16 4 C -0.15 -1.65 5.87 -105.08 -0.62 -2.26 16 5 C -0.09 -0.67 9.36 -39.08 -0.37 -1.03 16 6 C -0.11 -0.75 10.02 -39.68 -0.40 -1.15 16 7 C -0.12 -0.90 9.96 -39.28 -0.39 -1.30 16 8 C 0.14 1.53 6.29 -83.75 -0.53 1.00 16 9 N -0.67 -7.14 5.30 -9.90 -0.05 -7.20 16 10 C 0.52 7.77 7.02 -10.99 -0.08 7.70 16 11 O -0.49 -9.43 13.94 -14.06 -0.20 -9.62 16 12 C 0.07 1.05 2.98 -27.88 -0.08 0.96 16 13 H 0.11 1.62 7.16 -51.93 -0.37 1.25 16 14 C -0.16 -2.01 9.49 37.16 0.35 -1.66 16 15 O -0.34 -7.00 9.32 -45.87 -0.43 -7.43 16 16 C 0.47 11.03 7.22 36.00 0.26 11.29 16 17 O -0.52 -12.62 14.68 -18.75 -0.28 -12.90 16 18 C 0.06 1.55 2.74 -92.92 -0.25 1.30 16 19 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 20 C -0.13 -3.26 8.90 37.16 0.33 -2.93 16 21 C -0.51 -14.49 8.37 -34.44 -0.29 -14.77 16 22 H 0.08 2.17 6.76 -52.48 -0.35 1.82 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 24 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 25 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 C -0.06 -0.85 8.24 -38.90 -0.32 -1.17 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.29 6.47 -51.93 -0.34 -0.04 16 33 H 0.13 0.53 6.35 -52.49 -0.33 0.19 16 34 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 36 H 0.41 2.77 8.45 -40.82 -0.34 2.42 16 37 H 0.07 0.60 7.78 -51.93 -0.40 0.19 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.58 8.11 -51.93 -0.42 0.15 16 42 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.15 2.49 5.81 -52.49 -0.30 2.19 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -35.79 377.49 -7.61 -43.40 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.70 Total: 2.08 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.34 Total: 0.79 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.57 Total: -31.71 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.80 Total: -36.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.79 -7.61 -43.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771773893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.518 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds