Wall clock time and date at job start Tue Mar 31 2020 18:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21244 * 120.00393 * 2 1 4 4 C 1.47192 * 119.99624 * 179.97438 * 2 1 3 5 5 C 1.39893 * 120.13928 * 359.97438 * 4 2 1 6 6 C 1.37906 * 119.96516 * 180.02562 * 5 4 2 7 7 C 1.38299 * 120.25164 * 359.73608 * 6 5 4 8 8 C 1.38987 * 120.28098 * 0.52252 * 7 6 5 9 9 N 1.39962 * 119.98834 * 179.76186 * 8 7 6 10 10 C 1.34774 * 119.99989 * 214.82004 * 9 8 7 11 11 O 1.21291 * 120.00056 * 355.39628 * 10 9 8 12 12 C 1.50697 * 119.99831 * 175.39009 * 10 9 8 13 13 H 1.09001 * 109.47432 * 305.00192 * 12 10 9 14 14 C 1.53000 * 109.46859 * 65.00605 * 12 10 9 15 15 O 1.45205 * 109.47389 * 185.00287 * 12 10 9 16 16 C 1.34225 * 117.00303 * 149.99646 * 15 12 10 17 17 O 1.20823 * 119.99781 * 0.02562 * 16 15 12 18 18 C 1.50696 * 120.00020 * 179.97438 * 16 15 12 19 19 H 1.08997 * 109.47217 * 60.00939 * 18 16 15 20 20 C 1.53004 * 109.47417 * 300.00640 * 18 16 15 21 21 C 1.50702 * 109.47275 * 180.02562 * 18 16 15 22 22 H 1.08006 * 119.99516 * 0.02562 * 21 18 16 23 23 C 1.37872 * 120.00223 * 179.97438 * 21 18 16 24 24 N 1.31516 * 120.00178 * 0.02562 * 23 21 18 25 25 Si 1.86799 * 120.00156 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47004 * 60.00270 * 25 23 21 27 27 H 1.48496 * 109.47398 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47155 * 300.00805 * 25 23 21 29 29 C 1.38569 * 120.02809 * 359.47785 * 8 7 6 30 30 H 1.08998 * 109.47197 * 269.99919 * 1 2 3 31 31 H 1.09003 * 109.46840 * 30.00016 * 1 2 3 32 32 H 1.09000 * 109.47615 * 149.99568 * 1 2 3 33 33 H 1.07992 * 120.01469 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.87381 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.85937 * 180.25347 * 7 6 5 36 36 H 0.97004 * 119.99662 * 34.82309 * 9 8 7 37 37 H 1.09000 * 109.46897 * 299.99677 * 14 12 10 38 38 H 1.08998 * 109.47331 * 60.00120 * 14 12 10 39 39 H 1.09007 * 109.46740 * 179.97438 * 14 12 10 40 40 H 1.08997 * 109.47175 * 299.99770 * 20 18 16 41 41 H 1.08996 * 109.46894 * 59.99997 * 20 18 16 42 42 H 1.09002 * 109.47090 * 180.02562 * 20 18 16 43 43 H 0.97000 * 120.00087 * 179.97438 * 24 23 21 44 44 H 1.07999 * 120.12847 * 180.23926 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2428 -1.2748 0.0006 5 6 1.5462 -2.4879 0.0017 6 6 2.2393 -3.6802 0.0027 7 6 3.6223 -3.6821 -0.0028 8 6 4.3248 -2.4829 0.0015 9 7 5.7244 -2.4921 0.0009 10 6 6.4048 -1.5409 0.6708 11 8 5.8075 -0.6299 1.2041 12 6 7.9077 -1.6093 0.7572 13 1 8.2047 -2.5752 1.1658 14 6 8.5071 -1.4405 -0.6403 15 8 8.3916 -0.5484 1.6227 16 6 9.5245 -0.7855 2.3024 17 8 10.0933 -1.8442 2.1781 18 6 10.0875 0.2692 3.2197 19 1 9.3587 0.5023 3.9960 20 6 10.3970 1.5330 2.4147 21 6 11.3537 -0.2428 3.8566 22 1 11.7148 -1.2329 3.6202 23 6 12.0517 0.5529 4.7400 24 7 11.6123 1.7587 5.0274 25 14 13.6217 -0.0815 5.5288 26 1 14.6141 -0.3987 4.4707 27 1 14.1764 0.9577 6.4328 28 1 13.3222 -1.3083 6.3103 29 6 3.6402 -1.2782 0.0004 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 0.4663 -2.4908 0.0025 34 1 1.7000 -4.6159 0.0031 35 1 4.1586 -4.6196 -0.0061 36 1 6.2047 -3.1831 -0.4816 37 1 8.1439 -2.2369 -1.2900 38 1 8.2103 -0.4745 -1.0488 39 1 9.5943 -1.4895 -0.5777 40 1 11.1259 1.3000 1.6385 41 1 9.4813 1.9035 1.9539 42 1 10.8047 2.2957 3.0782 43 1 12.1032 2.3184 5.6492 44 1 4.1845 -0.3454 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771773893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:14 Heat of formation + Delta-G solvation = -154.809653 kcal Electronic energy + Delta-G solvation = -27843.881948 eV Core-core repulsion = 23725.733891 eV Total energy + Delta-G solvation = -4118.148057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.15363 -41.36660 -40.54702 -39.08964 -37.57481 -36.10919 -35.96486 -33.56287 -32.67670 -32.36668 -31.24611 -29.73397 -27.33511 -26.36359 -25.11359 -24.89028 -23.60109 -21.88063 -21.32758 -21.03530 -19.11179 -18.76557 -18.45720 -17.93958 -17.59988 -17.13889 -17.02652 -16.74409 -16.46401 -16.15644 -16.04419 -15.94753 -15.31912 -15.05929 -14.85301 -14.58551 -14.40346 -14.18628 -13.79933 -13.60416 -13.39534 -13.25936 -13.05815 -13.04890 -12.88016 -12.80915 -12.75886 -12.64704 -12.47324 -12.33680 -12.06802 -11.94076 -11.61926 -11.19110 -11.15059 -10.93136 -10.82626 -10.56454 -10.01429 -9.32869 -8.21643 -6.36649 -0.39285 0.22067 1.13204 1.21781 1.34087 1.42585 1.44769 1.48205 1.53707 2.15311 2.43393 2.78191 3.02898 3.08239 3.33204 3.66944 3.78693 3.88106 4.02122 4.04450 4.09708 4.23659 4.37115 4.43730 4.54317 4.56012 4.61599 4.62975 4.67182 4.84527 4.89986 4.92683 4.99237 5.08879 5.21528 5.23661 5.30515 5.33914 5.36991 5.41425 5.63981 5.82819 5.89677 6.03976 6.15232 6.52401 6.69791 6.84657 6.92835 7.32430 8.85093 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019555 B = 0.002346 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.514861 B =11932.544484 C =12632.792193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.384 3.616 3 O -0.514 6.514 4 C -0.180 4.180 5 C -0.072 4.072 6 C -0.106 4.106 7 C -0.100 4.100 8 C 0.112 3.888 9 N -0.650 5.650 10 C 0.519 3.481 11 O -0.542 6.542 12 C 0.059 3.941 13 H 0.120 0.880 14 C -0.158 4.158 15 O -0.349 6.349 16 C 0.477 3.523 17 O -0.528 6.528 18 C 0.049 3.951 19 H 0.042 0.958 20 C -0.121 4.121 21 C -0.537 4.537 22 H 0.063 0.937 23 C 0.018 3.982 24 N -0.913 5.913 25 Si 0.970 3.030 26 H -0.269 1.269 27 H -0.276 1.276 28 H -0.272 1.272 29 C -0.101 4.101 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.165 0.835 36 H 0.433 0.567 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.268 0.732 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.148 -14.951 -15.415 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.266 3.734 3 O -0.394 6.394 4 C -0.181 4.181 5 C -0.090 4.090 6 C -0.124 4.124 7 C -0.120 4.120 8 C 0.018 3.982 9 N -0.299 5.299 10 C 0.306 3.694 11 O -0.417 6.417 12 C 0.000 4.000 13 H 0.138 0.862 14 C -0.215 4.215 15 O -0.266 6.266 16 C 0.323 3.677 17 O -0.417 6.417 18 C 0.030 3.970 19 H 0.060 0.940 20 C -0.178 4.178 21 C -0.575 4.575 22 H 0.082 0.918 23 C -0.181 4.181 24 N -0.551 5.551 25 Si 0.794 3.206 26 H -0.194 1.194 27 H -0.201 1.201 28 H -0.197 1.197 29 C -0.122 4.122 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.142 0.858 33 H 0.194 0.806 34 H 0.196 0.804 35 H 0.183 0.817 36 H 0.274 0.726 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.996 -13.914 -14.972 30.766 hybrid contribution 1.486 0.010 0.477 1.561 sum -21.510 -13.904 -14.495 29.430 Atomic orbital electron populations 1.22272 0.89265 1.06699 1.06366 1.23446 0.94078 0.86884 0.68972 1.90572 1.73714 1.36254 1.38830 1.20667 0.93116 0.96704 1.07644 1.21923 1.02184 0.89877 0.95000 1.21502 0.92848 0.99757 0.98274 1.21611 0.95684 0.96260 0.98487 1.17874 0.82391 0.94465 1.03445 1.43108 1.04650 1.30698 1.51464 1.20583 0.89299 0.81822 0.77690 1.90783 1.70451 1.34468 1.45989 1.22635 0.90088 0.93358 0.93882 0.86242 1.22183 1.02345 1.04995 0.91960 1.86734 1.40939 1.44023 1.54897 1.24856 0.76729 0.88765 0.77385 1.90449 1.59703 1.27674 1.63881 1.18694 0.96063 0.90591 0.91608 0.93987 1.21559 0.99161 0.98384 0.98734 1.21213 1.07816 1.02025 1.26440 0.91845 1.25748 1.01103 0.94910 0.96382 1.69985 1.40785 1.09313 1.34994 0.85430 0.78793 0.78055 0.78308 1.19444 1.20115 1.19739 1.21498 0.94813 0.98002 0.97850 0.86677 0.89352 0.85838 0.80619 0.80406 0.81712 0.72618 0.85987 0.91406 0.91095 0.94528 0.94189 0.90330 0.92233 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 9.75 71.23 0.69 -1.19 16 2 C 0.38 8.70 7.23 28.04 0.20 8.91 16 3 O -0.51 -17.70 17.09 -2.92 -0.05 -17.75 16 4 C -0.18 -3.79 5.87 -20.16 -0.12 -3.91 16 5 C -0.07 -0.74 9.36 22.59 0.21 -0.53 16 6 C -0.11 -0.84 10.02 22.21 0.22 -0.61 16 7 C -0.10 -1.19 9.96 22.46 0.22 -0.97 16 8 C 0.11 2.37 6.29 38.10 0.24 2.61 16 9 N -0.65 -13.36 5.30 -303.62 -1.61 -14.97 16 10 C 0.52 16.22 7.02 87.66 0.62 16.83 16 11 O -0.54 -22.81 13.94 15.68 0.22 -22.59 16 12 C 0.06 1.86 2.98 29.85 0.09 1.95 16 13 H 0.12 3.53 7.16 -2.39 -0.02 3.51 16 14 C -0.16 -3.77 9.49 71.98 0.68 -3.09 16 15 O -0.35 -15.20 9.32 -45.03 -0.42 -15.62 16 16 C 0.48 23.29 7.22 71.23 0.51 23.80 16 17 O -0.53 -26.32 14.68 21.97 0.32 -26.00 16 18 C 0.05 2.68 2.74 -12.29 -0.03 2.65 16 19 H 0.04 2.45 8.14 -2.39 -0.02 2.43 16 20 C -0.12 -6.08 8.90 71.98 0.64 -5.44 16 21 C -0.54 -31.05 8.37 25.60 0.21 -30.83 16 22 H 0.06 3.75 6.76 -2.91 -0.02 3.73 16 23 C 0.02 1.03 5.30 84.65 0.45 1.48 16 24 N -0.91 -52.52 11.32 21.45 0.24 -52.28 16 25 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 29 C -0.10 -2.83 8.24 22.71 0.19 -2.64 16 30 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 0.27 6.47 -2.39 -0.02 0.26 16 33 H 0.18 0.29 6.35 -2.91 -0.02 0.27 16 34 H 0.18 -0.04 8.06 -2.91 -0.02 -0.07 16 35 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.43 4.80 8.45 -92.71 -0.78 4.02 16 37 H 0.12 1.67 7.78 -2.39 -0.02 1.65 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.04 1.84 8.11 -2.39 -0.02 1.82 16 42 H 0.08 4.25 6.07 -2.39 -0.01 4.24 16 43 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.10 3.91 5.81 -2.91 -0.02 3.89 16 Total: -1.00 -86.70 377.49 6.03 -80.67 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.26 Total: 13.16 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.04 Total: 9.01 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -1.37 Total: -67.25 kcal Atomic # 8 Polarization: -82.02 SS G_CDS: 0.07 Total: -81.95 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -86.70 6.03 -80.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771773893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.137 kcal (2) G-P(sol) polarization free energy of solvation -86.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds