Wall clock time and date at job start Tue Mar 31 2020 18:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35880 * 116.99451 * 2 1 4 4 C 1.38167 * 120.22452 * 0.02562 * 3 2 1 5 5 C 1.38744 * 120.31245 * 179.97438 * 4 3 2 6 6 C 1.37760 * 120.72547 * 359.97283 * 5 4 3 7 7 C 1.39181 * 120.02094 * 0.02883 * 6 5 4 8 8 N 1.37696 * 133.38330 * 179.97438 * 7 6 5 9 9 H 0.97004 * 125.06760 * 0.02562 * 8 7 6 10 10 C 1.36933 * 109.86832 * 179.97438 * 8 7 6 11 11 C 1.34215 * 109.89295 * 359.97438 * 10 8 7 12 12 C 1.50693 * 126.50198 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47486 * 265.02378 * 12 11 10 14 14 O 1.20833 * 119.99747 * 0.02562 * 13 12 11 15 15 O 1.34230 * 120.00262 * 179.72204 * 13 12 11 16 16 C 1.45202 * 116.99836 * 180.27336 * 15 13 12 17 17 C 1.52994 * 109.46919 * 180.02562 * 16 15 13 18 18 O 1.42895 * 109.47097 * 65.00298 * 17 16 15 19 19 C 1.42905 * 114.00271 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47526 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99613 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00232 * 180.02562 * 20 19 18 23 23 N 1.31512 * 119.99825 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00033 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47004 * 89.99580 * 24 22 20 26 26 H 1.48492 * 109.47114 * 210.00043 * 24 22 20 27 27 H 1.48499 * 109.46998 * 330.00076 * 24 22 20 28 28 C 1.40023 * 120.21802 * 180.26258 * 3 2 1 29 29 H 1.08999 * 109.47149 * 299.99613 * 1 2 3 30 30 H 1.08995 * 109.47179 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.84162 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.63512 * 180.02562 * 5 4 3 34 34 H 1.07999 * 119.99298 * 180.02562 * 6 5 4 35 35 H 1.08001 * 125.05378 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.47069 * 145.02580 * 12 11 10 37 37 H 1.09000 * 109.47237 * 25.03086 * 12 11 10 38 38 H 1.08998 * 109.47630 * 300.00638 * 16 15 13 39 39 H 1.09004 * 109.46770 * 60.01042 * 16 15 13 40 40 H 1.09001 * 109.47094 * 185.00652 * 17 16 15 41 41 H 1.09002 * 109.47283 * 305.00560 * 17 16 15 42 42 H 1.08992 * 109.47390 * 300.00885 * 19 18 17 43 43 H 1.09008 * 109.46500 * 60.00808 * 19 18 17 44 44 H 0.96997 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2978 2.3724 0.0005 5 6 1.9256 3.6096 0.0011 6 6 3.3002 3.7014 0.0016 7 6 4.0752 2.5454 0.0011 8 7 5.4331 2.3171 0.0010 9 1 6.1144 3.0076 0.0016 10 6 5.6786 0.9699 0.0009 11 6 4.5188 0.2944 0.0015 12 6 4.3538 -1.2035 0.0011 13 6 4.1753 -1.6889 -1.4143 14 8 4.1818 -0.8994 -2.3291 15 8 4.0151 -2.9988 -1.6595 16 6 3.8547 -3.3949 -3.0472 17 6 3.6857 -4.9134 -3.1278 18 8 2.4677 -5.2920 -2.4834 19 6 2.2124 -6.6979 -2.5029 20 6 0.9104 -6.9819 -1.7993 21 1 0.3352 -6.1699 -1.3796 22 6 0.4536 -8.2783 -1.6913 23 7 1.1543 -9.2671 -2.2019 24 14 -1.1608 -8.6302 -0.8197 25 1 -2.2739 -8.5828 -1.8014 26 1 -1.1048 -9.9781 -0.1994 27 1 -1.3869 -7.6091 0.2346 28 6 3.4438 1.2895 -0.0055 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2192 2.3170 0.0014 33 1 1.3302 4.5107 0.0019 34 1 3.7766 4.6706 0.0025 35 1 6.6595 0.5181 0.0004 36 1 3.4775 -1.4726 0.5908 37 1 5.2399 -1.6667 0.4351 38 1 2.9727 -2.9089 -3.4642 39 1 4.7364 -3.0966 -3.6144 40 1 3.6545 -5.2205 -4.1732 41 1 4.5256 -5.3993 -2.6313 42 1 2.1505 -7.0417 -3.5353 43 1 3.0218 -7.2211 -1.9936 44 1 0.8328 -10.1790 -2.1263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815230699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:51 Heat of formation + Delta-G solvation = -113.682430 kcal Electronic energy + Delta-G solvation = -27886.428740 eV Core-core repulsion = 23770.064094 eV Total energy + Delta-G solvation = -4116.364647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56861 -39.98001 -39.14298 -36.98519 -36.25008 -35.80690 -33.08671 -32.72888 -30.43962 -29.76605 -29.44078 -27.62431 -27.06411 -26.70700 -22.70956 -22.66472 -22.22714 -21.99925 -21.10064 -19.62431 -18.34812 -17.45097 -17.08937 -16.51806 -16.49445 -16.15536 -15.90907 -15.65869 -15.45119 -15.27302 -15.07577 -14.56326 -14.40176 -14.25579 -13.62996 -13.38545 -13.32870 -12.84639 -12.77679 -12.45165 -12.40574 -12.07076 -11.87961 -11.85912 -11.63086 -11.36010 -11.00658 -10.96056 -10.86979 -10.81262 -10.69062 -10.23498 -10.18350 -9.99770 -9.29424 -9.09408 -8.83355 -8.45048 -8.17255 -7.53120 -6.09382 -4.10689 1.04586 1.42528 2.34360 2.56317 2.85519 3.19484 3.30016 3.31779 3.36601 3.42250 3.74603 4.35383 4.50340 4.72440 4.74589 4.80029 4.85215 5.01336 5.08514 5.14313 5.17156 5.20977 5.27201 5.29031 5.35312 5.50505 5.54542 5.57228 5.61851 5.63816 5.89325 5.94900 6.01532 6.12882 6.19180 6.33398 6.39647 6.54561 6.79158 6.84467 7.09752 7.31184 7.38705 7.43755 7.81185 8.12039 8.16334 8.57284 9.02311 9.53885 11.02281 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.002567 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.678647 B =10906.362839 C =12248.317825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.185 3.815 4 C -0.249 4.249 5 C -0.057 4.057 6 C -0.174 4.174 7 C 0.134 3.866 8 N -0.592 5.592 9 H 0.418 0.582 10 C 0.054 3.946 11 C -0.137 4.137 12 C -0.038 4.038 13 C 0.463 3.537 14 O -0.510 6.510 15 O -0.343 6.343 16 C 0.076 3.924 17 C 0.062 3.938 18 O -0.390 6.390 19 C 0.194 3.806 20 C -0.513 4.513 21 H 0.067 0.933 22 C 0.056 3.944 23 N -0.899 5.899 24 Si 0.908 3.092 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.271 1.271 28 C -0.120 4.120 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.172 0.828 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.005 0.995 43 H 0.007 0.993 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.988 25.774 5.823 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.138 3.862 4 C -0.269 4.269 5 C -0.077 4.077 6 C -0.195 4.195 7 C 0.026 3.974 8 N -0.195 5.195 9 H 0.255 0.745 10 C -0.071 4.071 11 C -0.144 4.144 12 C -0.076 4.076 13 C 0.306 3.694 14 O -0.399 6.399 15 O -0.260 6.260 16 C 0.002 3.998 17 C -0.015 4.015 18 O -0.309 6.309 19 C 0.120 3.880 20 C -0.551 4.551 21 H 0.085 0.915 22 C -0.145 4.145 23 N -0.539 5.539 24 Si 0.735 3.265 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.196 1.196 28 C -0.125 4.125 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.189 0.811 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.053 25.758 5.587 27.560 hybrid contribution -0.561 -0.045 -0.018 0.563 sum 7.493 25.713 5.568 27.356 Atomic orbital electron populations 1.23123 0.78001 1.04573 1.01124 1.86121 1.21624 1.26635 1.87615 1.18432 0.89905 0.84582 0.93297 1.20906 0.99847 0.91865 1.14250 1.20503 0.93221 0.96887 0.97041 1.19833 0.93169 0.95209 1.11334 1.17892 0.83205 0.94291 1.02058 1.41651 1.05309 1.07110 1.65387 0.74543 1.21525 0.99082 0.82007 1.04494 1.19464 0.91159 0.92780 1.10956 1.19556 1.06022 0.90600 0.91461 1.23612 0.72647 0.80679 0.92444 1.90631 1.46310 1.56059 1.46854 1.86592 1.82077 1.25911 1.31383 1.23134 1.01750 0.95547 0.79386 1.22313 0.90380 0.91548 0.97292 1.87923 1.37217 1.28145 1.77663 1.20229 0.96569 0.75171 0.96051 1.21054 1.05186 0.92879 1.36005 0.91498 1.24950 0.98033 0.95691 0.95873 1.69962 1.38598 0.99681 1.45624 0.86331 0.82863 0.77569 0.79707 1.20505 1.21089 1.19572 1.18144 0.90075 0.92863 1.11383 0.92633 0.92616 0.87688 0.85413 0.85622 0.86277 0.81072 0.86391 0.87222 0.90748 0.90719 0.92168 0.93264 0.97688 0.97507 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.36 9.76 -19.36 -0.19 -4.55 16 3 C 0.18 2.53 6.72 -38.94 -0.26 2.27 16 4 C -0.25 -2.79 9.04 -39.42 -0.36 -3.15 16 5 C -0.06 -0.55 10.01 -39.57 -0.40 -0.95 16 6 C -0.17 -1.71 10.07 -39.41 -0.40 -2.10 16 7 C 0.13 1.52 7.27 -84.00 -0.61 0.91 16 8 N -0.59 -5.17 6.07 -10.64 -0.06 -5.24 16 9 H 0.42 2.13 8.96 -40.82 -0.37 1.76 16 10 C 0.05 0.52 11.74 -16.69 -0.20 0.32 16 11 C -0.14 -1.72 4.81 -102.72 -0.49 -2.21 16 12 C -0.04 -0.48 6.12 -29.04 -0.18 -0.66 16 13 C 0.46 7.52 7.95 36.00 0.29 7.80 16 14 O -0.51 -9.41 15.78 -18.76 -0.30 -9.71 16 15 O -0.34 -6.11 10.19 -42.02 -0.43 -6.54 16 16 C 0.08 1.29 5.84 37.15 0.22 1.50 16 17 C 0.06 1.18 6.33 37.15 0.24 1.42 16 18 O -0.39 -9.68 10.30 -38.81 -0.40 -10.08 16 19 C 0.19 5.38 5.69 36.00 0.20 5.59 16 20 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 21 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 23 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 24 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 C -0.12 -1.65 6.30 -105.03 -0.66 -2.31 16 29 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 30 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 33 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.53 7.62 -51.93 -0.40 1.13 16 37 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.32 8.13 -51.93 -0.42 0.89 16 39 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -37.23 382.46 -8.02 -45.25 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.08 Total: -1.15 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.04 Total: -4.37 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.67 Total: -31.51 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.31 Total: -30.88 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.23 -8.02 -45.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815230699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.432 kcal (2) G-P(sol) polarization free energy of solvation -37.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds