Wall clock time and date at job start Tue Mar 31 2020 18:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35880 * 116.99451 * 2 1 4 4 C 1.38167 * 120.22452 * 0.02562 * 3 2 1 5 5 C 1.38744 * 120.31245 * 179.97438 * 4 3 2 6 6 C 1.37760 * 120.72547 * 359.97283 * 5 4 3 7 7 C 1.39181 * 120.02094 * 0.02883 * 6 5 4 8 8 N 1.37696 * 133.38330 * 179.97438 * 7 6 5 9 9 H 0.97004 * 125.06760 * 0.02562 * 8 7 6 10 10 C 1.36933 * 109.86832 * 179.97438 * 8 7 6 11 11 C 1.34215 * 109.89295 * 359.97438 * 10 8 7 12 12 C 1.50693 * 126.50198 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47486 * 265.02378 * 12 11 10 14 14 O 1.20833 * 119.99747 * 0.02562 * 13 12 11 15 15 O 1.34230 * 120.00262 * 179.72204 * 13 12 11 16 16 C 1.45202 * 116.99836 * 180.27336 * 15 13 12 17 17 C 1.52994 * 109.46919 * 180.02562 * 16 15 13 18 18 O 1.42895 * 109.47097 * 65.00298 * 17 16 15 19 19 C 1.42905 * 114.00271 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47526 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99613 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00232 * 180.02562 * 20 19 18 23 23 N 1.31512 * 119.99825 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00033 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47004 * 89.99580 * 24 22 20 26 26 H 1.48492 * 109.47114 * 210.00043 * 24 22 20 27 27 H 1.48499 * 109.46998 * 330.00076 * 24 22 20 28 28 C 1.40023 * 120.21802 * 180.26258 * 3 2 1 29 29 H 1.08999 * 109.47149 * 299.99613 * 1 2 3 30 30 H 1.08995 * 109.47179 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.84162 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.63512 * 180.02562 * 5 4 3 34 34 H 1.07999 * 119.99298 * 180.02562 * 6 5 4 35 35 H 1.08001 * 125.05378 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.47069 * 145.02580 * 12 11 10 37 37 H 1.09000 * 109.47237 * 25.03086 * 12 11 10 38 38 H 1.08998 * 109.47630 * 300.00638 * 16 15 13 39 39 H 1.09004 * 109.46770 * 60.01042 * 16 15 13 40 40 H 1.09001 * 109.47094 * 185.00652 * 17 16 15 41 41 H 1.09002 * 109.47283 * 305.00560 * 17 16 15 42 42 H 1.08992 * 109.47390 * 300.00885 * 19 18 17 43 43 H 1.09008 * 109.46500 * 60.00808 * 19 18 17 44 44 H 0.96997 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2978 2.3724 0.0005 5 6 1.9256 3.6096 0.0011 6 6 3.3002 3.7014 0.0016 7 6 4.0752 2.5454 0.0011 8 7 5.4331 2.3171 0.0010 9 1 6.1144 3.0076 0.0016 10 6 5.6786 0.9699 0.0009 11 6 4.5188 0.2944 0.0015 12 6 4.3538 -1.2035 0.0011 13 6 4.1753 -1.6889 -1.4143 14 8 4.1818 -0.8994 -2.3291 15 8 4.0151 -2.9988 -1.6595 16 6 3.8547 -3.3949 -3.0472 17 6 3.6857 -4.9134 -3.1278 18 8 2.4677 -5.2920 -2.4834 19 6 2.2124 -6.6979 -2.5029 20 6 0.9104 -6.9819 -1.7993 21 1 0.3352 -6.1699 -1.3796 22 6 0.4536 -8.2783 -1.6913 23 7 1.1543 -9.2671 -2.2019 24 14 -1.1608 -8.6302 -0.8197 25 1 -2.2739 -8.5828 -1.8014 26 1 -1.1048 -9.9781 -0.1994 27 1 -1.3869 -7.6091 0.2346 28 6 3.4438 1.2895 -0.0055 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2192 2.3170 0.0014 33 1 1.3302 4.5107 0.0019 34 1 3.7766 4.6706 0.0025 35 1 6.6595 0.5181 0.0004 36 1 3.4775 -1.4726 0.5908 37 1 5.2399 -1.6667 0.4351 38 1 2.9727 -2.9089 -3.4642 39 1 4.7364 -3.0966 -3.6144 40 1 3.6545 -5.2205 -4.1732 41 1 4.5256 -5.3993 -2.6313 42 1 2.1505 -7.0417 -3.5353 43 1 3.0218 -7.2211 -1.9936 44 1 0.8328 -10.1790 -2.1263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815230699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:50 Heat of formation + Delta-G solvation = -137.761344 kcal Electronic energy + Delta-G solvation = -27887.472880 eV Core-core repulsion = 23770.064094 eV Total energy + Delta-G solvation = -4117.408787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.36742 -41.27071 -40.00751 -38.73515 -37.39321 -36.95905 -34.93978 -33.98169 -31.79306 -30.85190 -30.24820 -29.08961 -28.38585 -27.77603 -24.58751 -23.91464 -23.48093 -22.79019 -22.37437 -20.51847 -19.19099 -18.74815 -18.65359 -17.98800 -17.81231 -17.28761 -17.13209 -16.88843 -16.63547 -16.36070 -16.24565 -16.16997 -15.79047 -15.29579 -14.99486 -14.64120 -14.34754 -14.10408 -13.89821 -13.66434 -13.48030 -13.34535 -13.17737 -12.92332 -12.86068 -12.77516 -12.69110 -12.42888 -12.38568 -11.98855 -11.80560 -11.77868 -11.67296 -11.45738 -11.27194 -10.88770 -10.26637 -10.14216 -9.23965 -8.33113 -8.31661 -6.43719 0.24575 0.60759 1.29338 1.40703 1.43596 1.43750 1.55820 2.08259 2.19079 2.35327 2.48130 2.91176 3.02154 3.07754 3.76721 3.81650 3.95696 4.00605 4.05386 4.07616 4.11859 4.24176 4.36361 4.40554 4.43735 4.45379 4.51130 4.54176 4.67604 4.69468 4.71979 4.81767 4.85429 4.86121 5.07559 5.18298 5.38344 5.50114 5.55200 5.56077 5.64385 5.74195 5.95926 6.03037 6.50910 6.53102 6.74110 6.79708 6.85407 7.27755 8.80643 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.002567 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.678647 B =10906.362839 C =12248.317825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.338 6.338 3 C 0.147 3.853 4 C -0.252 4.252 5 C -0.065 4.065 6 C -0.170 4.170 7 C 0.117 3.883 8 N -0.578 5.578 9 H 0.436 0.564 10 C 0.078 3.922 11 C -0.182 4.182 12 C -0.030 4.030 13 C 0.463 3.537 14 O -0.536 6.536 15 O -0.361 6.361 16 C 0.079 3.921 17 C 0.055 3.945 18 O -0.409 6.409 19 C 0.208 3.792 20 C -0.550 4.550 21 H 0.059 0.941 22 C 0.007 3.993 23 N -0.929 5.929 24 Si 0.983 3.017 25 H -0.268 1.268 26 H -0.273 1.273 27 H -0.265 1.265 28 C -0.155 4.155 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.210 0.790 36 H 0.107 0.893 37 H 0.144 0.856 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.059 0.941 42 H -0.009 1.009 43 H -0.010 1.010 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 27.420 6.601 29.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C 0.101 3.899 4 C -0.272 4.272 5 C -0.084 4.084 6 C -0.191 4.191 7 C 0.009 3.991 8 N -0.182 5.182 9 H 0.277 0.723 10 C -0.049 4.049 11 C -0.188 4.188 12 C -0.068 4.068 13 C 0.308 3.692 14 O -0.426 6.426 15 O -0.277 6.277 16 C 0.006 3.994 17 C -0.022 4.022 18 O -0.329 6.329 19 C 0.133 3.867 20 C -0.587 4.587 21 H 0.078 0.922 22 C -0.191 4.191 23 N -0.569 5.569 24 Si 0.805 3.195 25 H -0.193 1.193 26 H -0.198 1.198 27 H -0.189 1.189 28 C -0.159 4.159 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.159 0.841 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.227 0.773 36 H 0.125 0.875 37 H 0.161 0.839 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.009 0.991 43 H 0.008 0.992 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.577 27.446 6.360 29.450 hybrid contribution -0.619 -0.462 -0.302 0.829 sum 7.958 26.984 6.058 28.778 Atomic orbital electron populations 1.23250 0.76910 1.04783 1.02312 1.86058 1.23059 1.27738 1.88262 1.18802 0.90564 0.84985 0.95552 1.21208 1.00628 0.91925 1.13420 1.20920 0.93744 0.97337 0.96412 1.20252 0.93292 0.96005 1.09539 1.18183 0.84288 0.94119 1.02545 1.41682 1.04924 1.07475 1.64153 0.72349 1.22079 0.99716 0.82075 1.01041 1.19610 0.92213 0.92594 1.14431 1.19608 1.06953 0.91412 0.88787 1.24385 0.71416 0.79677 0.93711 1.90601 1.47627 1.56351 1.47978 1.86597 1.82329 1.27187 1.31621 1.23100 1.02666 0.93835 0.79820 1.22633 0.88379 0.93069 0.98085 1.87874 1.40145 1.26252 1.78675 1.19876 0.95538 0.76618 0.94673 1.21379 1.06392 0.93510 1.37446 0.92239 1.25948 1.01992 0.95060 0.96141 1.70059 1.40417 1.00306 1.46069 0.85191 0.77797 0.77840 0.78650 1.19283 1.19767 1.18905 1.18639 0.90682 0.94483 1.12145 0.90723 0.92091 0.87999 0.84084 0.82564 0.83276 0.77338 0.87532 0.83860 0.91982 0.87528 0.90197 0.92310 0.99078 0.99197 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.34 -10.20 9.76 -92.20 -0.90 -11.10 16 3 C 0.15 4.17 6.72 22.69 0.15 4.32 16 4 C -0.25 -5.60 9.04 22.37 0.20 -5.40 16 5 C -0.07 -1.15 10.01 22.28 0.22 -0.93 16 6 C -0.17 -2.98 10.07 22.38 0.23 -2.75 16 7 C 0.12 2.52 7.27 39.02 0.28 2.81 16 8 N -0.58 -8.78 6.07 -187.58 -1.14 -9.92 16 9 H 0.44 3.13 8.96 -92.71 -0.83 2.30 16 10 C 0.08 1.32 11.74 82.98 0.97 2.29 16 11 C -0.18 -4.50 4.81 -18.63 -0.09 -4.59 16 12 C -0.03 -0.76 6.12 29.10 0.18 -0.58 16 13 C 0.46 15.21 7.95 71.23 0.57 15.78 16 14 O -0.54 -20.01 15.78 21.94 0.35 -19.66 16 15 O -0.36 -13.00 10.19 -48.77 -0.50 -13.49 16 16 C 0.08 2.70 5.84 71.98 0.42 3.13 16 17 C 0.06 2.11 6.33 71.98 0.46 2.56 16 18 O -0.41 -20.90 10.30 -145.56 -1.50 -22.40 16 19 C 0.21 11.89 5.69 71.24 0.41 12.30 16 20 C -0.55 -33.42 9.43 25.60 0.24 -33.18 16 21 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 22 C 0.01 0.42 5.46 84.66 0.46 0.88 16 23 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 24 Si 0.98 44.78 29.54 68.60 2.03 46.80 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 28 C -0.15 -4.28 6.30 -20.13 -0.13 -4.41 16 29 H 0.07 1.28 7.66 -2.39 -0.02 1.27 16 30 H 0.06 1.22 7.67 -2.39 -0.02 1.20 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.14 2.54 6.29 -2.91 -0.02 2.52 16 33 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.21 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.11 2.92 7.62 -2.38 -0.02 2.90 16 37 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 39 H 0.11 2.94 8.13 -2.38 -0.02 2.92 16 40 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 42 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 44 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -82.76 382.46 4.51 -78.25 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.20 Total: 13.54 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.69 Total: -6.18 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -0.85 Total: -65.75 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -2.55 Total: -66.66 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -82.76 4.51 -78.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815230699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.511 kcal (2) G-P(sol) polarization free energy of solvation -82.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds