Wall clock time and date at job start Tue Mar 31 2020 17:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99823 * 2 1 4 4 C 1.52994 * 109.46881 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47442 * 65.00365 * 4 3 2 6 6 C 1.36754 * 119.99736 * 276.97888 * 5 4 3 7 7 H 1.07997 * 120.00291 * 324.48355 * 6 5 4 8 8 C 1.39095 * 119.99893 * 144.47505 * 6 5 4 9 9 N 1.31343 * 119.99840 * 108.95598 * 8 6 5 10 10 Si 1.86803 * 120.00225 * 288.95110 * 8 6 5 11 11 H 1.48503 * 109.46707 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46786 * 119.99906 * 10 8 6 13 13 H 1.48497 * 109.47101 * 240.00148 * 10 8 6 14 14 C 1.34775 * 120.00614 * 96.97888 * 5 4 3 15 15 O 1.21776 * 120.00446 * 176.31665 * 14 5 4 16 16 C 1.41794 * 119.99523 * 356.04011 * 14 5 4 17 17 C 1.35736 * 120.15511 * 252.63662 * 16 14 5 18 18 C 1.47076 * 117.87950 * 180.65455 * 17 16 14 19 19 C 1.39575 * 121.51207 * 196.41751 * 18 17 16 20 20 C 1.37904 * 119.60904 * 180.16070 * 19 18 17 21 21 C 1.38578 * 120.39565 * 0.02562 * 20 19 18 22 22 C 1.38641 * 120.58021 * 0.02562 * 21 20 19 23 23 O 1.36000 * 120.11823 * 180.02562 * 22 21 20 24 24 C 1.42901 * 116.99688 * 359.97438 * 23 22 21 25 25 C 1.38801 * 119.76556 * 359.97438 * 22 21 20 26 26 O 1.35655 * 121.30790 * 179.97438 * 25 22 21 27 27 C 1.42811 * 117.28934 * 146.02422 * 26 25 22 28 28 H 1.09004 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47155 * 299.99353 * 1 2 3 30 30 H 1.08998 * 109.47496 * 60.00117 * 1 2 3 31 31 H 1.08995 * 109.47098 * 60.00248 * 3 2 1 32 32 H 1.09006 * 109.46851 * 300.00416 * 3 2 1 33 33 H 1.08997 * 109.47595 * 304.99807 * 4 3 2 34 34 H 1.09005 * 109.47175 * 184.99690 * 4 3 2 35 35 H 0.96998 * 119.99832 * 184.90752 * 9 8 6 36 36 H 1.08004 * 121.06429 * 0.89826 * 17 16 14 37 37 H 1.07999 * 120.20025 * 0.16936 * 19 18 17 38 38 H 1.07995 * 119.81005 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.70940 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.47106 * 60.00496 * 24 23 22 41 41 H 1.09005 * 109.46985 * 180.02562 * 24 23 22 42 42 H 1.09004 * 109.47335 * 299.99750 * 24 23 22 43 43 H 1.08997 * 109.30332 * 287.99140 * 27 26 25 44 44 H 1.08999 * 109.30278 * 168.60059 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.9603 -0.7966 -1.3839 7 1 4.1934 -1.4235 -0.5360 8 6 3.6444 -1.3737 -2.6095 9 7 4.5788 -1.9674 -3.3161 10 14 1.8911 -1.3042 -3.2503 11 1 1.0352 -0.5845 -2.2732 12 1 1.8674 -0.5874 -4.5506 13 1 1.3772 -2.6849 -3.4366 14 6 4.3958 1.3353 -2.2754 15 8 4.8248 0.8186 -3.2912 16 6 4.3329 2.7480 -2.1707 17 6 3.4053 3.4434 -2.8767 18 6 3.3942 4.9079 -2.7419 19 6 2.2959 5.6693 -3.1446 20 6 2.3289 7.0407 -3.0032 21 6 3.4440 7.6635 -2.4656 22 6 4.5420 6.9192 -2.0627 23 8 5.6312 7.5401 -1.5358 24 6 5.5767 8.9639 -1.4266 25 6 4.5253 5.5379 -2.1979 26 8 5.5825 4.7792 -1.8144 27 6 5.3003 3.4849 -1.2809 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8515 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 4.3751 -2.3070 -4.2016 36 1 2.6953 2.9371 -3.5140 37 1 1.4253 5.1874 -3.5642 38 1 1.4807 7.6329 -3.3133 39 1 3.4581 8.7383 -2.3604 40 1 4.7403 9.2476 -0.7878 41 1 6.5068 9.3309 -0.9925 42 1 5.4418 9.3993 -2.4168 43 1 4.8660 3.5917 -0.2869 44 1 6.2270 2.9159 -1.2067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457179675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:40 Heat of formation + Delta-G solvation = -62.927418 kcal Electronic energy + Delta-G solvation = -29708.471105 eV Core-core repulsion = 25594.307361 eV Total energy + Delta-G solvation = -4114.163744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.85074 -39.26460 -38.28052 -37.06257 -36.82284 -34.19428 -33.51963 -32.33832 -30.64643 -29.83609 -29.00432 -27.46459 -25.96216 -25.70022 -25.17024 -23.37830 -22.48656 -21.90966 -20.20387 -18.59780 -18.28823 -17.21413 -17.11289 -16.48557 -16.07634 -15.85300 -15.59766 -15.35980 -15.05275 -14.91211 -14.63176 -14.38223 -14.16311 -14.00669 -13.72642 -13.30938 -13.13441 -12.71200 -12.67840 -12.22757 -12.14366 -11.87647 -11.83223 -11.65314 -11.40567 -11.30715 -11.16977 -11.05496 -10.87462 -10.61617 -10.49978 -10.41968 -9.82309 -9.74013 -9.03662 -8.69907 -8.14596 -7.98992 -7.63322 -7.47795 -6.67911 -3.39144 0.76584 1.37534 2.35334 3.14826 3.29631 3.41659 3.51983 3.61320 3.79728 3.89882 4.31365 4.47445 4.63208 4.69856 4.82643 4.91888 4.97302 5.00373 5.07147 5.11948 5.21089 5.29168 5.29874 5.35899 5.49709 5.57369 5.60226 5.67495 5.78312 5.82375 5.91684 5.96975 6.02705 6.08713 6.11318 6.25087 6.38454 6.49722 6.50740 6.71516 6.86061 7.05278 7.53625 7.60056 7.77376 8.22558 8.92944 9.26845 9.56446 10.20666 10.38927 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.003908 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.019008 B = 7162.262625 C = 7568.987808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.350 6.350 3 C 0.052 3.948 4 C 0.093 3.907 5 N -0.405 5.405 6 C -0.442 4.442 7 H 0.092 0.908 8 C 0.189 3.811 9 N -0.706 5.706 10 Si 0.775 3.225 11 H -0.236 1.236 12 H -0.288 1.288 13 H -0.285 1.285 14 C 0.450 3.550 15 O -0.548 6.548 16 C -0.142 4.142 17 C -0.093 4.093 18 C -0.077 4.077 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.184 4.184 22 C 0.104 3.896 23 O -0.306 6.306 24 C 0.027 3.973 25 C 0.098 3.902 26 O -0.298 6.298 27 C 0.107 3.893 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.275 0.725 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 18.525 5.719 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C -0.027 4.027 4 C -0.031 4.031 5 N -0.124 5.124 6 C -0.560 4.560 7 H 0.109 0.891 8 C -0.040 4.040 9 N -0.325 5.325 10 Si 0.594 3.406 11 H -0.159 1.159 12 H -0.214 1.214 13 H -0.211 1.211 14 C 0.242 3.758 15 O -0.433 6.433 16 C -0.146 4.146 17 C -0.113 4.113 18 C -0.078 4.078 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.203 4.203 22 C 0.058 3.942 23 O -0.220 6.220 24 C -0.068 4.068 25 C 0.052 3.948 26 O -0.212 6.212 27 C 0.032 3.968 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.491 17.850 5.225 19.133 hybrid contribution -1.856 0.362 -0.595 1.982 sum -6.346 18.211 4.631 19.834 Atomic orbital electron populations 1.22628 0.83395 1.01920 0.98527 1.88225 1.17361 1.26323 1.94840 1.22943 0.95593 0.85503 0.98621 1.21909 0.91551 0.98008 0.91609 1.43379 1.52433 1.06036 1.10509 1.17725 1.60622 0.79441 0.98254 0.89058 1.25104 0.95923 0.89451 0.93474 1.70613 1.33235 1.21427 1.07260 0.88383 0.94402 0.78509 0.79275 1.15861 1.21443 1.21105 1.16423 0.86906 0.84775 0.87740 1.90808 1.50139 1.72864 1.29477 1.22001 0.95946 0.97312 0.99313 1.21927 0.98776 0.90260 1.00308 1.19023 0.94253 0.94007 1.00555 1.20977 0.97712 0.93413 1.00874 1.20779 0.97724 0.94337 0.99902 1.21085 0.94003 0.99770 1.05463 1.18300 0.87839 0.89551 0.98465 1.86198 1.36549 1.21153 1.78065 1.23046 1.03405 0.79017 1.01339 1.18306 0.88846 0.87986 0.99643 1.86048 1.29437 1.27520 1.78183 1.21940 1.00276 0.80332 0.94210 0.90382 0.95287 0.94972 0.94309 0.94189 0.90477 0.91015 0.91462 0.84755 0.85212 0.85528 0.85049 0.92824 0.88306 0.92830 0.91010 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.03 101.05 1.01 1.53 16 2 O -0.35 -6.94 8.65 -35.23 -0.30 -7.25 16 3 C 0.05 0.91 6.28 37.15 0.23 1.14 16 4 C 0.09 1.75 5.73 -4.05 -0.02 1.73 16 5 N -0.41 -9.78 2.56 -118.01 -0.30 -10.08 16 6 C -0.44 -12.16 8.34 -15.04 -0.13 -12.28 16 7 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 8 C 0.19 5.34 3.30 -17.44 -0.06 5.28 16 9 N -0.71 -20.55 13.46 55.50 0.75 -19.80 16 10 Si 0.77 19.76 29.44 -169.99 -5.00 14.76 16 11 H -0.24 -5.65 4.63 56.52 0.26 -5.39 16 12 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 13 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 14 C 0.45 11.21 6.54 -14.90 -0.10 11.11 16 15 O -0.55 -16.36 15.14 5.12 0.08 -16.29 16 16 C -0.14 -2.88 4.33 -104.17 -0.45 -3.33 16 17 C -0.09 -1.75 9.78 -36.89 -0.36 -2.11 16 18 C -0.08 -1.26 5.80 -104.99 -0.61 -1.87 16 19 C -0.11 -1.46 9.86 -39.21 -0.39 -1.85 16 20 C -0.11 -1.20 10.02 -39.58 -0.40 -1.60 16 21 C -0.18 -2.09 9.04 -39.31 -0.36 -2.44 16 22 C 0.10 1.48 6.69 -39.22 -0.26 1.22 16 23 O -0.31 -4.13 10.33 -33.01 -0.34 -4.48 16 24 C 0.03 0.22 9.81 101.05 0.99 1.21 16 25 C 0.10 1.64 6.48 -38.55 -0.25 1.39 16 26 O -0.30 -5.38 10.22 -31.94 -0.33 -5.71 16 27 C 0.11 1.85 6.27 36.00 0.23 2.07 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.51 7.90 -51.93 -0.41 0.10 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.42 8.09 -51.93 -0.42 0.99 16 34 H 0.07 1.15 4.43 -51.93 -0.23 0.92 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.13 2.55 8.06 -52.48 -0.42 2.13 16 37 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 1.08 6.28 -52.49 -0.33 0.75 16 40 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 43 H 0.07 1.05 6.40 -51.93 -0.33 0.72 16 44 H 0.12 2.06 8.08 -51.93 -0.42 1.64 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -35.32 364.68 -6.89 -42.21 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.02 Total: -0.06 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.91 Total: 1.20 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 0.45 Total: -29.88 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.89 Total: -33.72 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.00 Total: 14.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.32 -6.89 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457179675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.720 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds