Wall clock time and date at job start Tue Mar 31 2020 17:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99823 * 2 1 4 4 C 1.52994 * 109.46881 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47442 * 65.00365 * 4 3 2 6 6 C 1.36754 * 119.99736 * 276.97888 * 5 4 3 7 7 H 1.07997 * 120.00291 * 324.48355 * 6 5 4 8 8 C 1.39095 * 119.99893 * 144.47505 * 6 5 4 9 9 N 1.31343 * 119.99840 * 108.95598 * 8 6 5 10 10 Si 1.86803 * 120.00225 * 288.95110 * 8 6 5 11 11 H 1.48503 * 109.46707 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46786 * 119.99906 * 10 8 6 13 13 H 1.48497 * 109.47101 * 240.00148 * 10 8 6 14 14 C 1.34775 * 120.00614 * 96.97888 * 5 4 3 15 15 O 1.21776 * 120.00446 * 176.31665 * 14 5 4 16 16 C 1.41794 * 119.99523 * 356.04011 * 14 5 4 17 17 C 1.35736 * 120.15511 * 252.63662 * 16 14 5 18 18 C 1.47076 * 117.87950 * 180.65455 * 17 16 14 19 19 C 1.39575 * 121.51207 * 196.41751 * 18 17 16 20 20 C 1.37904 * 119.60904 * 180.16070 * 19 18 17 21 21 C 1.38578 * 120.39565 * 0.02562 * 20 19 18 22 22 C 1.38641 * 120.58021 * 0.02562 * 21 20 19 23 23 O 1.36000 * 120.11823 * 180.02562 * 22 21 20 24 24 C 1.42901 * 116.99688 * 359.97438 * 23 22 21 25 25 C 1.38801 * 119.76556 * 359.97438 * 22 21 20 26 26 O 1.35655 * 121.30790 * 179.97438 * 25 22 21 27 27 C 1.42811 * 117.28934 * 146.02422 * 26 25 22 28 28 H 1.09004 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47155 * 299.99353 * 1 2 3 30 30 H 1.08998 * 109.47496 * 60.00117 * 1 2 3 31 31 H 1.08995 * 109.47098 * 60.00248 * 3 2 1 32 32 H 1.09006 * 109.46851 * 300.00416 * 3 2 1 33 33 H 1.08997 * 109.47595 * 304.99807 * 4 3 2 34 34 H 1.09005 * 109.47175 * 184.99690 * 4 3 2 35 35 H 0.96998 * 119.99832 * 184.90752 * 9 8 6 36 36 H 1.08004 * 121.06429 * 0.89826 * 17 16 14 37 37 H 1.07999 * 120.20025 * 0.16936 * 19 18 17 38 38 H 1.07995 * 119.81005 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.70940 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.47106 * 60.00496 * 24 23 22 41 41 H 1.09005 * 109.46985 * 180.02562 * 24 23 22 42 42 H 1.09004 * 109.47335 * 299.99750 * 24 23 22 43 43 H 1.08997 * 109.30332 * 287.99140 * 27 26 25 44 44 H 1.08999 * 109.30278 * 168.60059 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.9603 -0.7966 -1.3839 7 1 4.1934 -1.4235 -0.5360 8 6 3.6444 -1.3737 -2.6095 9 7 4.5788 -1.9674 -3.3161 10 14 1.8911 -1.3042 -3.2503 11 1 1.0352 -0.5845 -2.2732 12 1 1.8674 -0.5874 -4.5506 13 1 1.3772 -2.6849 -3.4366 14 6 4.3958 1.3353 -2.2754 15 8 4.8248 0.8186 -3.2912 16 6 4.3329 2.7480 -2.1707 17 6 3.4053 3.4434 -2.8767 18 6 3.3942 4.9079 -2.7419 19 6 2.2959 5.6693 -3.1446 20 6 2.3289 7.0407 -3.0032 21 6 3.4440 7.6635 -2.4656 22 6 4.5420 6.9192 -2.0627 23 8 5.6312 7.5401 -1.5358 24 6 5.5767 8.9639 -1.4266 25 6 4.5253 5.5379 -2.1979 26 8 5.5825 4.7792 -1.8144 27 6 5.3003 3.4849 -1.2809 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8515 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 4.3751 -2.3070 -4.2016 36 1 2.6953 2.9371 -3.5140 37 1 1.4253 5.1874 -3.5642 38 1 1.4807 7.6329 -3.3133 39 1 3.4581 8.7383 -2.3604 40 1 4.7403 9.2476 -0.7878 41 1 6.5068 9.3309 -0.9925 42 1 5.4418 9.3993 -2.4168 43 1 4.8660 3.5917 -0.2869 44 1 6.2270 2.9159 -1.2067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457179675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:39 Heat of formation + Delta-G solvation = -87.113489 kcal Electronic energy + Delta-G solvation = -29709.519892 eV Core-core repulsion = 25594.307361 eV Total energy + Delta-G solvation = -4115.212531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.03477 -40.69368 -39.60573 -38.52767 -37.86505 -36.06322 -35.13855 -34.22007 -31.78680 -30.87667 -30.58505 -28.22571 -27.37389 -27.07797 -26.72272 -24.87647 -23.76601 -23.12615 -21.71572 -20.19607 -19.42395 -18.71134 -18.30853 -17.94726 -17.25792 -17.22635 -16.91036 -16.69287 -16.38462 -16.26706 -15.99907 -15.90504 -15.63934 -15.30514 -15.19799 -14.91141 -14.42462 -14.13766 -14.06673 -13.71843 -13.48216 -13.20283 -13.03518 -12.86539 -12.82859 -12.81361 -12.57771 -12.48842 -12.14798 -12.02577 -11.99769 -11.79840 -11.61841 -11.02620 -10.76170 -10.38434 -10.04749 -9.50947 -9.10094 -8.89656 -8.83982 -5.50384 -0.42690 0.37555 1.07362 1.21049 1.39189 1.57508 1.97932 2.24126 2.31545 2.39603 2.60635 2.75369 3.08449 3.20127 3.66358 3.68613 3.83950 3.96183 4.05058 4.12501 4.17609 4.27543 4.29042 4.39527 4.42470 4.46723 4.49742 4.51593 4.55920 4.59580 4.65211 4.71671 4.79195 4.87008 4.99686 5.03559 5.14970 5.24012 5.37689 5.43614 5.52177 5.71158 6.02954 6.15691 6.48104 6.56317 6.89153 7.25496 7.55210 8.22019 8.32052 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.003908 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.019008 B = 7162.262625 C = 7568.987808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.054 3.946 4 C 0.092 3.908 5 N -0.409 5.409 6 C -0.465 4.465 7 H 0.069 0.931 8 C 0.161 3.839 9 N -0.746 5.746 10 Si 0.826 3.174 11 H -0.211 1.211 12 H -0.310 1.310 13 H -0.277 1.277 14 C 0.450 3.550 15 O -0.612 6.612 16 C -0.175 4.175 17 C -0.071 4.071 18 C -0.104 4.104 19 C -0.110 4.110 20 C -0.096 4.096 21 C -0.166 4.166 22 C 0.095 3.905 23 O -0.334 6.334 24 C 0.016 3.984 25 C 0.067 3.933 26 O -0.316 6.316 27 C 0.117 3.883 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.277 0.723 36 H 0.123 0.877 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 22.896 6.843 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.306 6.306 3 C -0.023 4.023 4 C -0.031 4.031 5 N -0.127 5.127 6 C -0.584 4.584 7 H 0.087 0.913 8 C -0.066 4.066 9 N -0.367 5.367 10 Si 0.646 3.354 11 H -0.133 1.133 12 H -0.238 1.238 13 H -0.203 1.203 14 C 0.243 3.757 15 O -0.501 6.501 16 C -0.178 4.178 17 C -0.091 4.091 18 C -0.105 4.105 19 C -0.128 4.128 20 C -0.114 4.114 21 C -0.185 4.185 22 C 0.049 3.951 23 O -0.248 6.248 24 C -0.078 4.078 25 C 0.022 3.978 26 O -0.230 6.230 27 C 0.043 3.957 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.187 0.813 39 H 0.188 0.812 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.198 22.235 6.404 24.233 hybrid contribution -1.014 -0.761 -0.946 1.582 sum -8.212 21.474 5.458 23.629 Atomic orbital electron populations 1.22813 0.81484 1.02780 0.99976 1.88171 1.19614 1.27616 1.95152 1.22924 0.94017 0.85180 1.00184 1.22086 0.93322 0.99004 0.88695 1.43385 1.52103 1.05086 1.12083 1.17552 1.62521 0.81009 0.97355 0.91347 1.25622 0.98076 0.89009 0.93924 1.70663 1.34642 1.23555 1.07862 0.87666 0.91075 0.78712 0.77973 1.13317 1.23824 1.20265 1.17086 0.85039 0.86650 0.86909 1.90753 1.52508 1.74798 1.32009 1.21680 0.98748 0.94718 1.02695 1.22031 0.97172 0.92115 0.97766 1.18977 0.95857 0.92422 1.03203 1.21288 0.97084 0.94510 0.99918 1.21264 0.98694 0.93543 0.97893 1.21584 0.92541 1.01519 1.02812 1.18510 0.89007 0.88912 0.98664 1.86167 1.36654 1.24003 1.77978 1.23406 1.05243 0.76298 1.02839 1.18698 0.88822 0.89146 1.01121 1.86000 1.30743 1.27489 1.78789 1.21808 0.99213 0.80117 0.94605 0.89971 0.92008 0.95231 0.89967 0.95058 0.90272 0.88201 0.91207 0.85913 0.83586 0.81345 0.81226 0.90882 0.86789 0.91325 0.88416 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.03 113.37 1.14 1.89 16 2 O -0.39 -14.81 8.65 -148.98 -1.29 -16.09 16 3 C 0.05 1.82 6.28 71.98 0.45 2.27 16 4 C 0.09 3.41 5.73 86.38 0.50 3.90 16 5 N -0.41 -20.35 2.56 -645.44 -1.65 -22.00 16 6 C -0.47 -26.72 8.34 84.13 0.70 -26.02 16 7 H 0.07 4.14 8.06 -2.91 -0.02 4.11 16 8 C 0.16 9.43 3.30 84.97 0.28 9.71 16 9 N -0.75 -45.76 13.46 21.69 0.29 -45.46 16 10 Si 0.83 42.32 29.44 68.60 2.02 44.34 16 11 H -0.21 -9.91 4.63 99.48 0.46 -9.45 16 12 H -0.31 -16.95 7.11 99.48 0.71 -16.24 16 13 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 14 C 0.45 23.40 6.54 85.12 0.56 23.95 16 15 O -0.61 -38.67 15.14 -4.59 -0.07 -38.74 16 16 C -0.17 -7.26 4.33 -19.57 -0.08 -7.35 16 17 C -0.07 -2.69 9.78 24.01 0.23 -2.46 16 18 C -0.10 -3.22 5.80 -20.10 -0.12 -3.34 16 19 C -0.11 -2.52 9.86 22.51 0.22 -2.29 16 20 C -0.10 -1.61 10.02 22.27 0.22 -1.39 16 21 C -0.17 -2.94 9.04 22.45 0.20 -2.73 16 22 C 0.09 2.44 6.69 22.50 0.15 2.59 16 23 O -0.33 -8.21 10.33 -80.86 -0.84 -9.05 16 24 C 0.02 0.20 9.81 113.37 1.11 1.31 16 25 C 0.07 2.16 6.48 22.94 0.15 2.31 16 26 O -0.32 -11.47 10.22 -77.01 -0.79 -12.25 16 27 C 0.12 4.10 6.27 71.23 0.45 4.55 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.03 0.86 7.90 -2.39 -0.02 0.84 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.08 2.89 8.09 -2.39 -0.02 2.87 16 34 H 0.10 3.10 4.43 -2.38 -0.01 3.09 16 35 H 0.28 15.90 8.31 -92.71 -0.77 15.12 16 36 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.17 1.67 6.28 -2.91 -0.02 1.65 16 40 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 41 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 43 H 0.10 2.78 6.40 -2.39 -0.02 2.77 16 44 H 0.11 4.00 8.08 -2.39 -0.02 3.98 16 Total: -1.00 -83.22 364.68 4.62 -78.61 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.77 Total: 13.73 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.16 Total: 6.93 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -1.36 Total: -67.47 kcal Atomic # 8 Polarization: -73.16 SS G_CDS: -2.98 Total: -76.14 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.02 Total: 44.34 kcal Total: -83.22 4.62 -78.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457179675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.508 kcal (2) G-P(sol) polarization free energy of solvation -83.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds