Wall clock time and date at job start Tue Mar 31 2020 17:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34751 * 117.00159 * 2 1 4 4 O 1.21528 * 119.99902 * 359.97438 * 3 2 1 5 5 C 1.47353 * 120.00569 * 179.97438 * 3 2 1 6 6 C 1.37922 * 126.76898 * 359.68584 * 5 3 2 7 7 O 1.33580 * 108.39288 * 180.26497 * 6 5 3 8 8 C 1.34897 * 109.90597 * 359.97438 * 7 6 5 9 9 C 1.41754 * 125.67142 * 180.02562 * 8 7 6 10 10 C 1.35528 * 120.00423 * 319.17101 * 9 8 7 11 11 C 1.41638 * 119.99943 * 351.27650 * 10 9 8 12 12 O 1.21761 * 119.99780 * 353.23257 * 11 10 9 13 13 N 1.34770 * 119.99891 * 173.23071 * 11 10 9 14 14 C 1.46505 * 119.99885 * 180.02562 * 13 11 10 15 15 H 1.08997 * 110.01727 * 326.39202 * 14 13 11 16 16 C 1.54265 * 110.03045 * 87.83299 * 14 13 11 17 17 C 1.54894 * 104.19457 * 95.67444 * 16 14 13 18 18 C 1.54893 * 102.74726 * 37.94127 * 17 16 14 19 19 H 1.09005 * 110.48421 * 80.73359 * 18 17 16 20 20 C 1.50698 * 110.59957 * 203.31946 * 18 17 16 21 21 H 1.08007 * 119.99746 * 114.83853 * 20 18 17 22 22 C 1.37873 * 120.00316 * 294.84693 * 20 18 17 23 23 N 1.31519 * 119.99774 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 120.00092 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47166 * 59.99830 * 24 22 20 26 26 H 1.48506 * 109.46942 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47157 * 299.99221 * 24 22 20 28 28 C 1.53868 * 110.03136 * 204.99993 * 14 13 11 29 29 C 1.36447 * 108.64724 * 0.02562 * 8 7 6 30 30 H 1.09000 * 109.47593 * 300.00527 * 1 2 3 31 31 H 1.09003 * 109.47037 * 60.00867 * 1 2 3 32 32 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 33 33 H 1.08005 * 125.79813 * 0.23829 * 6 5 3 34 34 H 1.07997 * 119.99756 * 139.18052 * 9 8 7 35 35 H 1.07994 * 120.00252 * 171.27647 * 10 9 8 36 36 H 0.96998 * 120.00429 * 0.02562 * 13 11 10 37 37 H 1.08996 * 110.48805 * 214.34929 * 16 14 13 38 38 H 1.08999 * 110.48882 * 336.99739 * 16 14 13 39 39 H 1.08996 * 110.75763 * 279.62799 * 17 16 14 40 40 H 1.08999 * 110.91435 * 156.32576 * 17 16 14 41 41 H 0.97004 * 119.99676 * 180.02562 * 23 22 20 42 42 H 1.09000 * 110.03823 * 0.02562 * 28 14 13 43 43 H 1.09003 * 110.03117 * 121.43161 * 28 14 13 44 44 H 1.08003 * 126.70413 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5352 1.2778 0.0006 6 6 4.4176 0.2178 0.0072 7 8 5.6615 0.7048 0.0111 8 6 5.6268 2.0533 0.0068 9 6 6.7567 2.9093 0.0085 10 6 7.8301 2.6131 0.7811 11 6 7.7555 1.5573 1.7222 12 8 6.6938 0.9969 1.9256 13 7 8.8597 1.1729 2.3926 14 6 8.7827 0.0804 3.3657 15 1 7.8115 0.0892 3.8604 16 6 9.0049 -1.2729 2.6594 17 6 10.5133 -1.5626 2.8594 18 6 10.7720 -1.0497 4.2979 19 1 10.4541 -1.7918 5.0304 20 6 12.2289 -0.7142 4.4872 21 1 12.5284 0.3073 4.6698 22 6 13.1794 -1.7110 4.4272 23 7 12.8146 -2.9550 4.2053 24 14 14.9854 -1.2949 4.6611 25 1 15.1842 -0.6899 6.0026 26 1 15.7969 -2.5338 4.5521 27 1 15.4106 -0.3305 3.6152 28 6 9.9062 0.2223 4.4074 29 6 4.3231 2.4562 0.0003 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 4.1485 -0.8282 0.0093 34 1 6.7621 3.7976 -0.6056 35 1 8.7423 3.1821 0.6791 36 1 9.7054 1.6195 2.2308 37 1 8.4018 -2.0510 3.1273 38 1 8.7693 -1.1927 1.5982 39 1 11.1123 -1.0072 2.1378 40 1 10.7172 -2.6310 2.7878 41 1 13.4833 -3.6564 4.1634 42 1 10.5085 1.1042 4.1893 43 1 9.4802 0.2991 5.4078 44 1 3.9620 3.4740 -0.0047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868657607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:03 Heat of formation + Delta-G solvation = -90.246016 kcal Electronic energy + Delta-G solvation = -27847.436161 eV Core-core repulsion = 23732.087794 eV Total energy + Delta-G solvation = -4115.348368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.77878 -40.32570 -39.76771 -37.24783 -36.61234 -34.26970 -33.57689 -33.21609 -31.98642 -29.61267 -28.20077 -27.94437 -27.10645 -24.44627 -24.07025 -23.45864 -21.53158 -20.85472 -19.85070 -19.42149 -19.10464 -18.01994 -17.31933 -16.83510 -16.65772 -16.42072 -16.16983 -15.96819 -15.40615 -14.91593 -14.54018 -14.37500 -14.22473 -13.76826 -13.57728 -13.50303 -13.20348 -12.99996 -12.75444 -12.55646 -12.35026 -12.24466 -11.71803 -11.07415 -11.04890 -11.03161 -10.87335 -10.83755 -10.60040 -10.43960 -10.31415 -10.03602 -9.96826 -9.66265 -9.58829 -9.23575 -8.84826 -8.61447 -8.38310 -8.19362 -6.03479 -4.06778 0.46696 1.11271 2.13604 2.43946 2.90400 2.96484 3.28806 3.34451 3.35999 3.49849 3.63628 4.39779 4.40999 4.52022 4.73248 4.81787 4.89450 4.91639 5.10351 5.19806 5.28141 5.29539 5.42126 5.56463 5.65225 5.70871 5.80499 5.82110 5.94494 6.10725 6.16912 6.30994 6.33184 6.59685 6.62671 6.74156 6.87233 6.91367 6.92728 7.23880 7.32699 7.55340 7.67553 7.82750 7.85471 8.00046 8.40494 8.48816 8.95642 9.57281 11.05913 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025369 B = 0.002167 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.443857 B =12915.232659 C =13562.782097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.541 3.459 4 O -0.511 6.511 5 C -0.239 4.239 6 C 0.073 3.927 7 O -0.118 6.118 8 C 0.023 3.977 9 C -0.015 4.015 10 C -0.185 4.185 11 C 0.531 3.469 12 O -0.538 6.538 13 N -0.706 5.706 14 C 0.140 3.860 15 H 0.076 0.924 16 C -0.134 4.134 17 C -0.099 4.099 18 C 0.048 3.952 19 H 0.032 0.968 20 C -0.515 4.515 21 H 0.054 0.946 22 C 0.062 3.938 23 N -0.888 5.888 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 C -0.123 4.123 29 C -0.132 4.132 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.217 0.783 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.400 0.600 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.583 8.746 -11.183 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.387 3.613 4 O -0.401 6.401 5 C -0.242 4.242 6 C -0.001 4.001 7 O -0.009 6.009 8 C -0.026 4.026 9 C -0.035 4.035 10 C -0.205 4.205 11 C 0.320 3.680 12 O -0.418 6.418 13 N -0.356 5.356 14 C 0.036 3.964 15 H 0.094 0.906 16 C -0.172 4.172 17 C -0.138 4.138 18 C 0.030 3.970 19 H 0.050 0.950 20 C -0.553 4.553 21 H 0.072 0.928 22 C -0.140 4.140 23 N -0.527 5.527 24 Si 0.717 3.283 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.204 1.204 28 C -0.161 4.161 29 C -0.151 4.151 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.233 0.767 34 H 0.175 0.825 35 H 0.157 0.843 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.173 8.279 -11.013 22.806 hybrid contribution 1.157 0.496 0.147 1.268 sum -17.016 8.775 -10.866 22.014 Atomic orbital electron populations 1.23272 0.75856 1.03783 1.02633 1.86543 1.23674 1.32688 1.84621 1.20130 0.87658 0.81341 0.72219 1.90832 1.66561 1.36024 1.46647 1.19487 0.90171 0.94830 1.19674 1.25097 0.80547 0.99387 0.95058 1.84228 1.29003 1.20859 1.66778 1.19139 0.94628 0.80976 1.07897 1.20598 0.89519 0.96448 0.96907 1.22473 0.99857 1.00378 0.97813 1.17161 0.84639 0.83836 0.82383 1.90817 1.28526 1.56194 1.66311 1.46260 1.10959 1.36561 1.41809 1.21757 0.99737 0.85902 0.88969 0.90628 1.22814 0.99964 0.95632 0.98818 1.22451 0.90495 1.01492 0.99325 1.19456 0.93601 0.90765 0.93206 0.94961 1.21123 0.91175 0.93770 1.49243 0.92788 1.24987 0.98759 0.95089 0.95118 1.69951 1.33682 0.99819 1.49201 0.86708 0.85281 0.77611 0.78653 1.20345 1.21371 1.20351 1.22615 0.95565 1.01857 0.96093 1.21680 0.90463 0.98971 1.04000 0.91798 0.91845 0.87905 0.76654 0.82517 0.84252 0.76530 0.92149 0.93131 0.93553 0.91512 0.93001 0.92055 0.92883 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.78 10.41 -40.63 -0.42 -4.21 16 3 C 0.54 6.87 7.96 34.44 0.27 7.14 16 4 O -0.51 -7.59 16.73 -19.29 -0.32 -7.91 16 5 C -0.24 -2.98 6.16 -104.97 -0.65 -3.62 16 6 C 0.07 0.85 11.98 30.62 0.37 1.22 16 7 O -0.12 -1.61 7.79 -18.84 -0.15 -1.76 16 8 C 0.02 0.28 5.22 -38.89 -0.20 0.07 16 9 C -0.01 -0.14 9.93 -39.21 -0.39 -0.53 16 10 C -0.18 -1.95 9.85 -39.25 -0.39 -2.33 16 11 C 0.53 7.81 7.35 -14.97 -0.11 7.70 16 12 O -0.54 -9.47 12.10 -19.65 -0.24 -9.71 16 13 N -0.71 -10.56 5.02 -55.61 -0.28 -10.84 16 14 C 0.14 2.48 3.25 -66.81 -0.22 2.26 16 15 H 0.08 1.39 7.56 -51.93 -0.39 0.99 16 16 C -0.13 -2.54 6.54 -25.07 -0.16 -2.70 16 17 C -0.10 -2.22 5.75 -24.73 -0.14 -2.36 16 18 C 0.05 1.14 2.71 -90.11 -0.24 0.90 16 19 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.51 -13.50 8.47 -34.44 -0.29 -13.79 16 21 H 0.05 1.38 7.55 -52.48 -0.40 0.99 16 22 C 0.06 1.68 5.35 -17.82 -0.10 1.59 16 23 N -0.89 -24.97 12.29 55.43 0.68 -24.29 16 24 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.12 -2.38 6.12 -25.62 -0.16 -2.54 16 29 C -0.13 -1.58 10.64 -38.89 -0.41 -1.99 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.22 1.76 8.06 -52.48 -0.42 1.33 16 34 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.40 5.23 8.28 -40.82 -0.34 4.89 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 39 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 40 H 0.07 1.65 7.55 -51.93 -0.39 1.25 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 1.14 7.14 -51.93 -0.37 0.77 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -33.30 376.59 -7.91 -41.21 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.09 Total: 3.79 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.75 Total: -7.65 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.40 Total: -35.13 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.13 Total: -23.58 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.30 -7.91 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868657607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.031 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds