Wall clock time and date at job start Tue Mar 31 2020 17:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34219 * 116.99960 * 2 1 4 4 O 1.20827 * 120.00344 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00021 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.47176 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47113 * 179.97438 * 6 5 3 8 8 C 1.36820 * 119.99862 * 264.86271 * 7 6 5 9 9 H 1.08003 * 120.00015 * 144.83750 * 8 7 6 10 10 C 1.39078 * 119.99911 * 324.83498 * 8 7 6 11 11 N 1.31342 * 120.00057 * 339.28895 * 10 8 7 12 12 Si 1.86803 * 119.99639 * 159.28766 * 10 8 7 13 13 H 1.48495 * 109.47315 * 90.00102 * 12 10 8 14 14 H 1.48500 * 109.46746 * 210.00078 * 12 10 8 15 15 H 1.48499 * 109.46986 * 329.99592 * 12 10 8 16 16 C 1.34780 * 120.00199 * 84.85986 * 7 6 5 17 17 O 1.21658 * 119.99368 * 0.02562 * 16 7 6 18 18 C 1.46946 * 119.99868 * 180.27831 * 16 7 6 19 19 C 1.33125 * 119.99753 * 179.72707 * 18 16 7 20 20 C 1.50699 * 119.99978 * 179.97438 * 19 18 16 21 21 O 1.42906 * 109.47232 * 134.99879 * 20 19 18 22 22 C 1.35893 * 117.00069 * 179.97438 * 21 20 19 23 23 C 1.38729 * 120.05827 * 359.72634 * 22 21 20 24 24 C 1.38143 * 119.94691 * 179.74344 * 23 22 21 25 25 C 1.38268 * 120.05193 * 0.51041 * 24 23 22 26 26 C 1.38258 * 120.11521 * 359.76347 * 25 24 23 27 27 C 1.38153 * 120.05295 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46795 * 299.99666 * 1 2 3 30 30 H 1.08995 * 109.46992 * 60.00108 * 1 2 3 31 31 H 1.08999 * 109.46969 * 60.00191 * 5 3 2 32 32 H 1.08997 * 109.47229 * 299.99610 * 5 3 2 33 33 H 1.08999 * 109.46896 * 60.00293 * 6 5 3 34 34 H 1.09000 * 109.47297 * 300.00220 * 6 5 3 35 35 H 0.96996 * 119.99877 * 180.02562 * 11 10 8 36 36 H 1.08000 * 120.00310 * 359.72381 * 18 16 7 37 37 H 1.08000 * 119.99937 * 359.97438 * 19 18 16 38 38 H 1.09002 * 109.47307 * 254.99407 * 20 19 18 39 39 H 1.08998 * 109.47188 * 14.99972 * 20 19 18 40 40 H 1.08003 * 120.02952 * 359.97438 * 23 22 21 41 41 H 1.08004 * 119.97668 * 180.26977 * 24 23 22 42 42 H 1.08009 * 119.94299 * 179.74721 * 25 24 23 43 43 H 1.08002 * 119.97709 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.02376 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4632 2.8187 -0.0011 8 6 6.1407 2.9609 1.1791 9 1 7.0993 2.4816 1.3126 10 6 5.5950 3.7227 2.2068 11 7 4.6717 4.6183 1.9414 12 14 6.1752 3.4719 3.9646 13 1 7.3225 4.3734 4.2406 14 1 5.0653 3.7823 4.9012 15 1 6.5988 2.0607 4.1495 16 6 6.1417 2.7491 -1.1635 17 8 5.5391 2.6231 -2.2128 18 6 7.6095 2.8199 -1.1628 19 6 8.2799 2.7457 -2.3105 20 6 9.7851 2.8189 -2.3099 21 8 10.3116 1.8064 -3.1702 22 6 11.6639 1.7353 -3.2838 23 6 12.4676 2.6253 -2.5862 24 6 13.8422 2.5476 -2.6992 25 6 14.4168 1.5905 -3.5151 26 6 13.6180 0.7060 -4.2158 27 6 12.2430 0.7762 -4.1019 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9565 0.7806 0.8891 33 1 3.6108 3.2363 0.8889 34 1 3.6101 3.2360 -0.8910 35 1 4.2914 5.1499 2.6581 36 1 8.1443 2.9322 -0.2313 37 1 7.7451 2.6331 -3.2420 38 1 10.1014 3.7991 -2.6666 39 1 10.1561 2.6637 -1.2968 40 1 12.0191 3.3760 -1.9523 41 1 14.4684 3.2374 -2.1529 42 1 15.4917 1.5339 -3.6053 43 1 14.0692 -0.0405 -4.8527 44 1 11.6194 0.0853 -4.6498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:15 Heat of formation + Delta-G solvation = -108.388342 kcal Electronic energy + Delta-G solvation = -27150.484953 eV Core-core repulsion = 23034.349875 eV Total energy + Delta-G solvation = -4116.135078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.12682 -40.06509 -38.70355 -37.49533 -36.20988 -35.13483 -33.33438 -32.04514 -31.13792 -30.80396 -29.85220 -27.68525 -26.76743 -25.15147 -23.82146 -22.71431 -22.09581 -20.70298 -19.80785 -19.00644 -18.32198 -17.38635 -17.05022 -16.28674 -16.19505 -16.11802 -16.00628 -15.64738 -15.57400 -14.69945 -14.54183 -14.34906 -13.80212 -13.72093 -13.55457 -13.35967 -13.20573 -12.79513 -12.61159 -12.32875 -12.18536 -12.01559 -11.77653 -11.70682 -11.48653 -11.28278 -11.17390 -11.08335 -10.88728 -10.60550 -10.55138 -10.48998 -10.13750 -10.02477 -9.28568 -9.13903 -8.90105 -8.65548 -8.26863 -7.71424 -6.51891 -4.20125 1.21027 1.34360 1.92814 2.65467 3.01317 3.06286 3.14365 3.17047 3.34351 3.67926 3.96642 4.28362 4.61023 4.71055 4.78722 4.89292 4.99142 5.12562 5.21697 5.23111 5.25427 5.27082 5.30192 5.41171 5.44720 5.54397 5.63031 5.80103 5.87548 5.89576 5.91294 6.19716 6.25757 6.27043 6.29636 6.39492 6.64956 6.70794 6.79568 6.89149 7.07120 7.21804 7.36363 7.41630 7.72378 8.15969 8.21412 8.91639 9.33639 9.77088 10.48868 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.002457 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.298493 B =11391.319238 C =13033.419768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.125 3.875 7 N -0.423 5.423 8 C -0.350 4.350 9 H 0.095 0.905 10 C 0.045 3.955 11 N -0.847 5.847 12 Si 0.914 3.086 13 H -0.275 1.275 14 H -0.280 1.280 15 H -0.266 1.266 16 C 0.488 3.512 17 O -0.604 6.604 18 C -0.129 4.129 19 C -0.133 4.133 20 C 0.095 3.905 21 O -0.309 6.309 22 C 0.136 3.864 23 C -0.211 4.211 24 C -0.080 4.080 25 C -0.166 4.166 26 C -0.082 4.082 27 C -0.156 4.156 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.274 0.726 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.890 -6.650 -4.012 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.164 4.164 6 C 0.001 3.999 7 N -0.139 5.139 8 C -0.477 4.477 9 H 0.113 0.887 10 C -0.163 4.163 11 N -0.482 5.482 12 Si 0.740 3.260 13 H -0.200 1.200 14 H -0.206 1.206 15 H -0.191 1.191 16 C 0.279 3.721 17 O -0.491 6.491 18 C -0.150 4.150 19 C -0.153 4.153 20 C 0.020 3.980 21 O -0.222 6.222 22 C 0.090 3.910 23 C -0.230 4.230 24 C -0.099 4.099 25 C -0.185 4.185 26 C -0.101 4.101 27 C -0.175 4.175 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.028 -6.356 -4.452 11.905 hybrid contribution 0.094 0.248 1.228 1.256 sum 9.122 -6.108 -3.224 11.441 Atomic orbital electron populations 1.23173 0.77338 1.03047 1.02345 1.86539 1.22767 1.34383 1.84648 1.24037 0.92346 0.80905 0.71743 1.90653 1.67262 1.36210 1.45053 1.21890 0.85971 1.03227 1.05323 1.21236 0.81904 0.91060 1.05663 1.43323 1.04708 1.60649 1.05224 1.19457 1.06188 1.31502 0.90604 0.88705 1.25444 0.96736 0.93440 1.00680 1.69884 1.26849 1.17744 1.33721 0.86144 0.78640 0.79255 0.81995 1.20038 1.20554 1.19072 1.18446 0.87693 0.82139 0.83779 1.90648 1.70433 1.56459 1.31586 1.22849 0.95269 0.98873 0.98019 1.22982 0.92207 1.00393 0.99751 1.21784 0.92456 0.90279 0.93436 1.86138 1.17699 1.54117 1.64272 1.19107 0.82724 0.94500 0.94640 1.21354 0.94769 1.02271 1.04621 1.20955 0.94078 0.97575 0.97243 1.21032 0.99801 0.97648 0.99968 1.20951 0.92571 0.98272 0.98261 1.20490 0.94938 1.00163 1.01867 0.88601 0.92161 0.92156 0.88239 0.87762 0.86314 0.91600 0.91562 0.85392 0.85293 0.90919 0.91166 0.85236 0.85912 0.86150 0.85561 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.02 10.57 -39.23 -0.41 -6.43 16 3 C 0.47 9.02 7.96 36.01 0.29 9.30 16 4 O -0.50 -11.02 15.73 -18.75 -0.29 -11.32 16 5 C -0.13 -2.50 6.10 -27.88 -0.17 -2.67 16 6 C 0.13 2.99 4.18 -4.04 -0.02 2.97 16 7 N -0.42 -10.27 2.54 -116.20 -0.30 -10.57 16 8 C -0.35 -8.34 8.54 -15.01 -0.13 -8.46 16 9 H 0.10 2.10 6.65 -52.48 -0.35 1.76 16 10 C 0.04 1.07 4.95 -17.45 -0.09 0.99 16 11 N -0.85 -21.75 11.32 55.50 0.63 -21.12 16 12 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 15 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 16 C 0.49 11.66 7.55 -12.73 -0.10 11.56 16 17 O -0.60 -15.74 15.89 5.23 0.08 -15.65 16 18 C -0.13 -2.55 8.88 -37.84 -0.34 -2.88 16 19 C -0.13 -2.30 9.47 -36.09 -0.34 -2.65 16 20 C 0.09 1.32 5.16 36.01 0.19 1.50 16 21 O -0.31 -4.59 10.12 -19.40 -0.20 -4.78 16 22 C 0.14 1.79 6.69 -39.22 -0.26 1.52 16 23 C -0.21 -2.43 9.04 -39.44 -0.36 -2.79 16 24 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 25 C -0.17 -1.54 10.04 -39.56 -0.40 -1.94 16 26 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 27 C -0.16 -1.81 9.99 -39.43 -0.39 -2.20 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 32 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 33 H 0.12 3.05 5.33 -51.93 -0.28 2.77 16 34 H 0.07 1.69 7.54 -51.93 -0.39 1.30 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.13 2.33 6.34 -52.49 -0.33 2.00 16 37 H 0.13 2.42 7.49 -52.49 -0.39 2.03 16 38 H 0.07 0.89 7.65 -51.93 -0.40 0.49 16 39 H 0.07 0.89 7.42 -51.93 -0.39 0.50 16 40 H 0.13 1.34 6.30 -52.48 -0.33 1.00 16 41 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -30.59 382.22 -7.40 -37.99 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.80 Total: 9.42 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.84 Total: 3.39 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.33 Total: -31.69 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.82 Total: -38.19 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.59 -7.40 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.399 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds