Wall clock time and date at job start Tue Mar 31 2020 17:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32997 * 1 3 3 C 1.50704 * 120.00121 * 2 1 4 4 C 1.53004 * 109.47221 * 94.99586 * 3 2 1 5 5 C 1.50694 * 109.46682 * 179.97438 * 4 3 2 6 6 O 1.20824 * 120.00488 * 359.97438 * 5 4 3 7 7 O 1.34231 * 119.99800 * 179.97438 * 5 4 3 8 8 C 1.45200 * 117.00425 * 180.02562 * 7 5 4 9 9 C 1.47105 * 119.99856 * 179.97438 * 2 1 3 10 10 O 1.21608 * 119.99711 * 0.02562 * 9 2 1 11 11 N 1.34769 * 119.99879 * 180.02562 * 9 2 1 12 12 C 1.46508 * 120.00011 * 179.97438 * 11 9 2 13 13 C 1.50695 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.38299 * 119.93247 * 90.00118 * 13 12 11 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08001 * 119.99434 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.99892 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46793 * 214.99683 * 3 2 1 31 31 H 1.08995 * 109.47125 * 334.99464 * 3 2 1 32 32 H 1.08994 * 109.46992 * 300.00099 * 4 3 2 33 33 H 1.09002 * 109.46866 * 59.99746 * 4 3 2 34 34 H 1.08997 * 109.46987 * 300.00194 * 8 7 5 35 35 H 1.09002 * 109.47214 * 59.99726 * 8 7 5 36 36 H 1.08997 * 109.47428 * 179.97438 * 8 7 5 37 37 H 0.97001 * 120.00514 * 359.97438 * 11 9 2 38 38 H 1.08998 * 109.46632 * 59.99915 * 12 11 9 39 39 H 1.08996 * 109.47144 * 299.99646 * 12 11 9 40 40 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 41 41 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 42 42 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 44 44 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.4473 1.6840 1.4370 5 6 3.2014 2.9887 1.4368 6 8 3.4253 3.5570 0.3944 7 8 3.6243 3.5196 2.5949 8 6 4.3437 4.7786 2.5192 9 6 2.0655 -1.2740 0.0006 10 8 1.4573 -2.3271 0.0006 11 7 3.4132 -1.2740 0.0011 12 6 4.1457 -2.5428 0.0022 13 6 5.6273 -2.2674 0.0020 14 6 6.3057 -2.1403 1.2004 15 6 7.6636 -1.8884 1.2036 16 6 8.3477 -1.7623 0.0015 17 8 9.6825 -1.5153 0.0013 18 6 10.3056 -1.5174 1.1970 19 1 9.7315 -1.6286 2.1049 20 6 11.6836 -1.3768 1.2610 21 7 12.3831 -1.2418 0.1550 22 14 12.5469 -1.3804 2.9175 23 1 12.9211 -2.7716 3.2777 24 1 13.7707 -0.5430 2.8397 25 1 11.6351 -0.8295 3.9521 26 6 7.6625 -1.8842 -1.2003 27 6 6.3057 -2.1418 -1.1967 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 2.9943 1.1988 -0.5894 31 1 1.4587 2.0854 -0.4344 32 1 1.5367 1.7903 2.0264 33 1 3.0722 0.9036 1.8714 34 1 5.2395 4.6492 1.9119 35 1 3.7039 5.5360 2.0662 36 1 4.6273 5.0960 3.5227 37 1 3.8982 -0.4340 0.0007 38 1 3.8827 -3.1149 -0.8875 39 1 3.8821 -3.1137 0.8925 40 1 5.7733 -2.2388 2.1348 41 1 8.1928 -1.7897 2.1397 42 1 13.3470 -1.1431 0.1997 43 1 8.1909 -1.7823 -2.1366 44 1 5.7730 -2.2411 -2.1309 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542791663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:48 Heat of formation + Delta-G solvation = -114.289560 kcal Electronic energy + Delta-G solvation = -27486.344461 eV Core-core repulsion = 23369.953487 eV Total energy + Delta-G solvation = -4116.390974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76220 -39.92154 -39.07539 -37.00267 -36.87196 -35.49748 -34.47869 -32.38505 -31.31519 -30.31755 -29.96838 -28.04086 -26.20102 -25.22250 -24.68998 -22.59933 -22.07748 -21.01955 -20.67080 -19.33248 -18.10894 -18.06000 -17.16986 -16.98785 -16.87498 -16.51591 -16.06119 -15.29544 -14.86939 -14.61230 -14.53058 -14.40567 -14.00427 -13.91434 -13.68537 -13.54363 -13.38620 -13.07574 -12.97299 -12.81210 -12.72934 -12.22543 -12.11078 -11.95964 -11.70597 -11.51311 -11.41702 -11.04638 -10.99044 -10.82267 -10.77857 -10.72193 -10.50377 -9.97692 -9.74601 -9.45135 -8.99970 -8.92843 -8.30926 -7.35083 -6.54715 -4.13661 1.15421 1.94221 2.04335 2.10791 2.44869 3.06333 3.08019 3.12769 3.18906 3.36774 3.88753 4.29076 4.43155 4.53277 4.56871 4.71549 4.83088 4.88038 4.96655 4.99644 5.12769 5.13724 5.21172 5.23222 5.31947 5.39469 5.46780 5.63312 5.67251 5.77813 5.87472 6.03401 6.09357 6.11512 6.15523 6.32552 6.45905 6.57826 6.78134 6.93470 7.11835 7.24552 7.33042 7.46808 7.54557 7.69526 7.89880 8.18877 8.90542 9.58629 10.62810 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.002949 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.819362 B = 9490.895610 C =11554.372474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.178 4.178 3 C -0.075 4.075 4 C -0.113 4.113 5 C 0.461 3.539 6 O -0.505 6.505 7 O -0.360 6.360 8 C 0.035 3.965 9 C 0.546 3.454 10 O -0.548 6.548 11 N -0.717 5.717 12 C 0.178 3.822 13 C -0.217 4.217 14 C -0.051 4.051 15 C -0.237 4.237 16 C 0.161 3.839 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.195 4.195 27 C -0.054 4.054 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.401 0.599 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.272 0.728 43 H 0.118 0.882 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.774 7.536 3.988 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.181 4.181 3 C -0.112 4.112 4 C -0.151 4.151 5 C 0.304 3.696 6 O -0.393 6.393 7 O -0.276 6.276 8 C -0.059 4.059 9 C 0.334 3.666 10 O -0.428 6.428 11 N -0.368 5.368 12 C 0.056 3.944 13 C -0.218 4.218 14 C -0.070 4.070 15 C -0.256 4.256 16 C 0.106 3.894 17 O -0.075 6.075 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.214 4.214 27 C -0.073 4.073 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.081 0.919 43 H 0.136 0.864 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.645 7.054 3.437 21.154 hybrid contribution 0.923 0.617 0.826 1.383 sum -18.722 7.670 4.262 20.676 Atomic orbital electron populations 1.24657 0.94496 1.03406 0.90754 1.21593 0.95717 0.93702 1.07111 1.20467 1.01587 0.94319 0.94840 1.21443 1.01453 0.92357 0.99807 1.23751 0.77004 0.87179 0.81713 1.90696 1.53688 1.61876 1.32993 1.86503 1.67407 1.38694 1.35021 1.23300 0.96195 0.82462 1.03934 1.18428 0.82405 0.89127 0.76639 1.90781 1.68430 1.32874 1.50717 1.46355 1.05864 1.10581 1.74005 1.20007 0.87769 0.84665 1.01967 1.19206 0.93829 1.15046 0.93732 1.20637 0.93666 0.96264 0.96405 1.21158 0.94666 1.11326 0.98493 1.19440 0.85366 0.91268 0.93306 1.83979 1.14968 1.75426 1.33164 1.21357 0.90275 1.52306 0.83041 0.88914 1.25323 0.95387 0.96342 0.99401 1.70033 1.07485 1.44694 1.27104 0.85696 0.78971 0.78715 0.79981 1.19761 1.20179 1.19119 1.20219 0.94070 1.10803 0.96336 1.20541 0.93183 0.96949 0.96608 0.86725 0.86403 0.89696 0.89345 0.87218 0.87242 0.91500 0.91946 0.88008 0.76320 0.91393 0.91391 0.87379 0.85408 0.91852 0.86354 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 13.90 28.92 0.40 -0.31 16 2 C -0.18 -1.64 5.25 -102.84 -0.54 -2.18 16 3 C -0.07 -0.61 4.12 -27.88 -0.11 -0.72 16 4 C -0.11 -0.86 5.79 -27.88 -0.16 -1.02 16 5 C 0.46 4.78 7.96 36.00 0.29 5.06 16 6 O -0.51 -6.62 15.73 -18.75 -0.29 -6.91 16 7 O -0.36 -3.63 10.56 -39.26 -0.41 -4.04 16 8 C 0.03 0.28 10.56 101.05 1.07 1.35 16 9 C 0.55 6.87 7.75 -12.67 -0.10 6.77 16 10 O -0.55 -8.77 16.22 5.27 0.09 -8.68 16 11 N -0.72 -8.74 5.50 -62.67 -0.34 -9.09 16 12 C 0.18 2.44 5.80 -5.19 -0.03 2.41 16 13 C -0.22 -3.42 5.25 -104.58 -0.55 -3.97 16 14 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 15 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 16 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 17 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 18 C -0.39 -10.67 9.49 30.89 0.29 -10.37 16 19 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 22 Si 0.94 19.94 29.55 -169.99 -5.02 14.91 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 C -0.19 -3.92 9.99 -39.39 -0.39 -4.32 16 27 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 28 H 0.11 0.54 8.02 -52.49 -0.42 0.12 16 29 H 0.12 0.99 7.49 -52.49 -0.39 0.60 16 30 H 0.08 0.78 6.92 -51.93 -0.36 0.42 16 31 H 0.09 0.66 7.97 -51.93 -0.41 0.24 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 4.51 6.68 -40.82 -0.27 4.24 16 38 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 44 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -33.33 386.13 -6.52 -39.86 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.78 Total: 7.41 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.32 Total: -10.62 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.41 Total: -32.96 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.62 Total: -24.42 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.33 -6.52 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542791663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.434 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds