Wall clock time and date at job start Tue Mar 31 2020 17:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48493 * 109.47238 * 269.99480 * 3 2 1 5 5 H 1.48498 * 109.47115 * 30.00132 * 3 2 1 6 6 H 1.48506 * 109.46916 * 149.99713 * 3 2 1 7 7 C 1.37875 * 119.99583 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00476 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99566 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00030 * 270.00389 * 10 9 7 12 12 O 1.21283 * 120.00236 * 4.45205 * 11 10 9 13 13 C 1.50707 * 119.99667 * 184.45100 * 11 10 9 14 14 C 1.52994 * 109.46774 * 174.45902 * 13 11 10 15 15 C 1.50707 * 109.47078 * 180.02562 * 14 13 11 16 16 O 1.21279 * 119.99591 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00134 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00018 * 179.97438 * 17 15 14 19 19 C 1.50692 * 109.47218 * 179.97438 * 18 17 15 20 20 N 1.34778 * 120.00426 * 179.97438 * 19 18 17 21 21 O 1.21286 * 120.00279 * 359.97438 * 19 18 17 22 22 C 1.39923 * 119.99818 * 89.99570 * 10 9 7 23 23 C 1.38872 * 120.07336 * 246.80191 * 22 10 9 24 24 C 1.38113 * 119.92646 * 179.97438 * 23 22 10 25 25 C 1.38284 * 120.07236 * 359.97313 * 24 23 22 26 26 C 1.38277 * 120.14310 * 0.04475 * 25 24 23 27 27 C 1.38117 * 120.06854 * 359.96101 * 26 25 24 28 28 H 0.97000 * 120.00347 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47188 * 60.00210 * 9 7 2 30 30 H 1.08996 * 109.46900 * 299.99790 * 9 7 2 31 31 H 1.08998 * 109.47306 * 294.45964 * 13 11 10 32 32 H 1.08998 * 109.46760 * 54.46246 * 13 11 10 33 33 H 1.09004 * 109.47662 * 300.00192 * 14 13 11 34 34 H 1.09001 * 109.47659 * 60.00410 * 14 13 11 35 35 H 0.97003 * 119.99559 * 359.97438 * 17 15 14 36 36 H 1.08998 * 109.46976 * 299.99436 * 18 17 15 37 37 H 1.09005 * 109.47329 * 59.99069 * 18 17 15 38 38 H 0.97004 * 119.99466 * 0.02562 * 20 19 18 39 39 H 0.96999 * 120.00586 * 179.97438 * 20 19 18 40 40 H 1.07996 * 120.03472 * 359.70196 * 23 22 10 41 41 H 1.07998 * 119.96255 * 179.97438 * 24 23 22 42 42 H 1.08010 * 119.92736 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.96673 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.03237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2239 -3.2099 1.1699 12 8 3.9454 -2.6673 2.2182 13 6 4.8206 -4.5938 1.1730 14 6 5.0978 -5.0264 2.6141 15 6 5.6951 -6.4101 2.6171 16 8 5.8804 -6.9929 1.5698 17 7 6.0225 -7.0002 3.7838 18 6 6.6026 -8.3454 3.7868 19 6 6.8757 -8.7715 5.2062 20 7 7.4128 -9.9824 5.4549 21 8 6.6122 -8.0248 6.1249 22 6 4.2334 -3.2358 -1.2090 23 6 3.4447 -4.3188 -1.5745 24 6 3.6776 -4.9681 -2.7710 25 6 4.6944 -4.5405 -3.6050 26 6 5.4818 -3.4627 -3.2438 27 6 5.2541 -2.8091 -2.0485 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8751 -0.6805 -0.8888 31 1 4.1218 -5.2919 0.7121 32 1 5.7536 -4.5884 0.6094 33 1 5.7967 -4.3284 3.0750 34 1 4.1649 -5.0319 3.1777 35 1 5.8739 -6.5341 4.6215 36 1 5.9038 -9.0434 3.3257 37 1 7.5357 -8.3400 3.2234 38 1 7.6239 -10.5794 4.7201 39 1 7.5890 -10.2565 6.3685 40 1 2.6530 -4.6556 -0.9218 41 1 3.0649 -5.8107 -3.0557 42 1 4.8742 -5.0498 -4.5404 43 1 6.2754 -3.1314 -3.8971 44 1 5.8696 -1.9676 -1.7668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109252807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:22 Heat of formation + Delta-G solvation = -80.676492 kcal Electronic energy + Delta-G solvation = -27867.854113 eV Core-core repulsion = 23785.213462 eV Total energy + Delta-G solvation = -4082.640651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.49144 -39.98830 -39.22124 -38.10264 -34.98191 -34.67793 -34.27159 -32.91743 -32.39478 -30.66800 -29.62145 -28.73649 -27.66631 -25.01606 -22.58664 -22.39400 -21.82757 -21.21191 -20.49532 -18.95870 -18.32864 -17.72886 -16.95706 -16.91956 -16.36223 -16.27805 -15.94862 -15.73242 -15.58169 -15.39856 -14.88149 -14.32084 -14.17708 -13.98126 -13.91514 -13.41885 -13.17263 -13.11052 -12.86640 -12.53820 -12.36567 -12.27205 -11.91064 -11.72924 -11.32695 -11.17959 -10.89688 -10.82654 -10.62519 -10.56280 -10.29351 -10.18369 -10.02594 -9.56742 -9.41803 -9.38653 -8.66057 -8.59533 -8.58393 -7.68995 -6.08019 -4.06718 1.58221 1.67944 2.02986 2.51972 2.57941 3.20662 3.21970 3.27695 3.35097 3.38074 3.72218 4.06270 4.27436 4.39708 4.62121 4.86684 4.90483 5.02486 5.17297 5.20100 5.20416 5.24716 5.27908 5.38439 5.68774 5.73045 5.84119 5.96358 5.98767 6.06727 6.12779 6.19278 6.28277 6.57593 6.67491 6.70141 6.75932 6.78207 6.92910 7.10126 7.26004 7.35207 7.58712 7.63869 8.03415 8.19343 8.45231 8.83186 8.95527 9.51143 11.05354 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.002877 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.593713 B = 9730.033862 C =11385.840700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.526 4.526 8 H 0.075 0.925 9 C 0.218 3.782 10 N -0.556 5.556 11 C 0.515 3.485 12 O -0.528 6.528 13 C -0.123 4.123 14 C -0.124 4.124 15 C 0.520 3.480 16 O -0.540 6.540 17 N -0.725 5.725 18 C 0.099 3.901 19 C 0.513 3.487 20 N -0.850 5.850 21 O -0.537 6.537 22 C 0.161 3.839 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.132 4.132 26 C -0.111 4.111 27 C -0.128 4.128 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.028 0.972 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.414 0.586 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.405 0.595 39 H 0.406 0.594 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.711 -19.390 1.813 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.094 0.906 9 C 0.099 3.901 10 N -0.283 5.283 11 C 0.303 3.697 12 O -0.404 6.404 13 C -0.163 4.163 14 C -0.164 4.164 15 C 0.308 3.692 16 O -0.416 6.416 17 N -0.382 5.382 18 C -0.029 4.029 19 C 0.297 3.703 20 N -0.415 5.415 21 O -0.413 6.413 22 C 0.069 3.931 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.150 4.150 26 C -0.129 4.129 27 C -0.148 4.148 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.252 0.748 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.234 0.766 39 H 0.237 0.763 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.281 -18.726 2.139 24.907 hybrid contribution 0.316 0.637 0.293 0.769 sum 16.597 -18.089 2.432 24.670 Atomic orbital electron populations 1.69886 1.06153 1.26975 1.50407 1.24825 0.94770 0.98854 0.94464 0.86889 0.80625 0.83947 0.78562 1.20062 1.20868 1.18838 1.21246 0.88870 0.94943 1.51361 0.90644 1.19799 0.96114 0.76642 0.97576 1.45600 1.64003 1.15856 1.02890 1.20407 0.78519 0.87318 0.83474 1.90688 1.51422 1.67628 1.30650 1.21414 1.03302 0.94876 0.96734 1.21380 1.03631 0.92400 0.98974 1.20864 0.77185 0.88350 0.82822 1.90707 1.53786 1.65802 1.31345 1.45765 1.65251 1.16645 1.10495 1.21017 1.01420 0.86859 0.93615 1.20616 0.76414 0.81779 0.91460 1.43738 1.66573 1.18199 1.12969 1.90782 1.51613 1.52592 1.46322 1.17680 0.94088 0.93438 0.87860 1.21361 0.98360 0.96680 0.97179 1.20983 0.97813 0.99720 0.94043 1.21063 0.96639 0.97656 0.99685 1.20935 0.99752 0.96108 0.96140 1.21251 0.97385 1.00874 0.95248 0.92544 0.93789 0.95431 0.88244 0.88704 0.87952 0.87510 0.74795 0.88185 0.88232 0.76616 0.76279 0.85791 0.86031 0.86365 0.86144 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.53 -15.24 9.94 -34.44 -0.34 -15.58 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.22 5.38 4.14 -5.19 -0.02 5.36 16 10 N -0.56 -11.76 2.51 -114.73 -0.29 -12.05 16 11 C 0.51 10.39 7.53 -10.98 -0.08 10.30 16 12 O -0.53 -12.40 15.61 5.55 0.09 -12.32 16 13 C -0.12 -1.90 3.65 -27.88 -0.10 -2.00 16 14 C -0.12 -1.63 5.01 -27.88 -0.14 -1.77 16 15 C 0.52 6.43 7.83 -10.98 -0.09 6.35 16 16 O -0.54 -8.04 15.98 5.56 0.09 -7.95 16 17 N -0.72 -7.20 5.53 -61.48 -0.34 -7.54 16 18 C 0.10 0.72 6.15 -5.20 -0.03 0.69 16 19 C 0.51 3.81 8.17 -10.99 -0.09 3.72 16 20 N -0.85 -2.83 8.87 31.22 0.28 -2.56 16 21 O -0.54 -6.26 16.50 5.55 0.09 -6.17 16 22 C 0.16 2.94 4.42 -83.69 -0.37 2.57 16 23 C -0.12 -1.96 8.46 -39.39 -0.33 -2.29 16 24 C -0.11 -1.50 10.04 -39.61 -0.40 -1.90 16 25 C -0.13 -1.69 10.04 -39.55 -0.40 -2.09 16 26 C -0.11 -1.47 10.04 -39.61 -0.40 -1.87 16 27 C -0.13 -2.02 9.64 -39.39 -0.38 -2.40 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.04 1.14 6.54 -51.93 -0.34 0.80 16 30 H 0.03 0.65 7.26 -51.93 -0.38 0.28 16 31 H 0.10 1.53 6.95 -51.93 -0.36 1.16 16 32 H 0.09 1.40 7.97 -51.93 -0.41 0.99 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.11 1.41 8.04 -51.93 -0.42 0.99 16 35 H 0.41 4.04 7.44 -40.82 -0.30 3.73 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.41 0.15 8.83 -40.82 -0.36 -0.21 16 39 H 0.41 1.08 8.93 -40.82 -0.36 0.72 16 40 H 0.12 2.13 7.90 -52.49 -0.41 1.72 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -38.33 380.61 -7.41 -45.75 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.90 Total: 6.00 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -3.27 Total: 1.15 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.42 Total: -49.17 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: 0.27 Total: -26.43 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.33 -7.41 -45.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109252807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.929 kcal (2) G-P(sol) polarization free energy of solvation -38.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds