Wall clock time and date at job start Tue Mar 31 2020 17:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48493 * 109.47238 * 269.99480 * 3 2 1 5 5 H 1.48498 * 109.47115 * 30.00132 * 3 2 1 6 6 H 1.48506 * 109.46916 * 149.99713 * 3 2 1 7 7 C 1.37875 * 119.99583 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00476 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99566 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00030 * 270.00389 * 10 9 7 12 12 O 1.21283 * 120.00236 * 4.45205 * 11 10 9 13 13 C 1.50707 * 119.99667 * 184.45100 * 11 10 9 14 14 C 1.52994 * 109.46774 * 174.45902 * 13 11 10 15 15 C 1.50707 * 109.47078 * 180.02562 * 14 13 11 16 16 O 1.21279 * 119.99591 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00134 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00018 * 179.97438 * 17 15 14 19 19 C 1.50692 * 109.47218 * 179.97438 * 18 17 15 20 20 N 1.34778 * 120.00426 * 179.97438 * 19 18 17 21 21 O 1.21286 * 120.00279 * 359.97438 * 19 18 17 22 22 C 1.39923 * 119.99818 * 89.99570 * 10 9 7 23 23 C 1.38872 * 120.07336 * 246.80191 * 22 10 9 24 24 C 1.38113 * 119.92646 * 179.97438 * 23 22 10 25 25 C 1.38284 * 120.07236 * 359.97313 * 24 23 22 26 26 C 1.38277 * 120.14310 * 0.04475 * 25 24 23 27 27 C 1.38117 * 120.06854 * 359.96101 * 26 25 24 28 28 H 0.97000 * 120.00347 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47188 * 60.00210 * 9 7 2 30 30 H 1.08996 * 109.46900 * 299.99790 * 9 7 2 31 31 H 1.08998 * 109.47306 * 294.45964 * 13 11 10 32 32 H 1.08998 * 109.46760 * 54.46246 * 13 11 10 33 33 H 1.09004 * 109.47662 * 300.00192 * 14 13 11 34 34 H 1.09001 * 109.47659 * 60.00410 * 14 13 11 35 35 H 0.97003 * 119.99559 * 359.97438 * 17 15 14 36 36 H 1.08998 * 109.46976 * 299.99436 * 18 17 15 37 37 H 1.09005 * 109.47329 * 59.99069 * 18 17 15 38 38 H 0.97004 * 119.99466 * 0.02562 * 20 19 18 39 39 H 0.96999 * 120.00586 * 179.97438 * 20 19 18 40 40 H 1.07996 * 120.03472 * 359.70196 * 23 22 10 41 41 H 1.07998 * 119.96255 * 179.97438 * 24 23 22 42 42 H 1.08010 * 119.92736 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.96673 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.03237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2239 -3.2099 1.1699 12 8 3.9454 -2.6673 2.2182 13 6 4.8206 -4.5938 1.1730 14 6 5.0978 -5.0264 2.6141 15 6 5.6951 -6.4101 2.6171 16 8 5.8804 -6.9929 1.5698 17 7 6.0225 -7.0002 3.7838 18 6 6.6026 -8.3454 3.7868 19 6 6.8757 -8.7715 5.2062 20 7 7.4128 -9.9824 5.4549 21 8 6.6122 -8.0248 6.1249 22 6 4.2334 -3.2358 -1.2090 23 6 3.4447 -4.3188 -1.5745 24 6 3.6776 -4.9681 -2.7710 25 6 4.6944 -4.5405 -3.6050 26 6 5.4818 -3.4627 -3.2438 27 6 5.2541 -2.8091 -2.0485 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8751 -0.6805 -0.8888 31 1 4.1218 -5.2919 0.7121 32 1 5.7536 -4.5884 0.6094 33 1 5.7967 -4.3284 3.0750 34 1 4.1649 -5.0319 3.1777 35 1 5.8739 -6.5341 4.6215 36 1 5.9038 -9.0434 3.3257 37 1 7.5357 -8.3400 3.2234 38 1 7.6239 -10.5794 4.7201 39 1 7.5890 -10.2565 6.3685 40 1 2.6530 -4.6556 -0.9218 41 1 3.0649 -5.8107 -3.0557 42 1 4.8742 -5.0498 -4.5404 43 1 6.2754 -3.1314 -3.8971 44 1 5.8696 -1.9676 -1.7668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109252807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:20 Heat of formation + Delta-G solvation = -111.357550 kcal Electronic energy + Delta-G solvation = -27869.184543 eV Core-core repulsion = 23785.213462 eV Total energy + Delta-G solvation = -4083.971081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60851 -41.08905 -40.10927 -39.45107 -36.59605 -35.53962 -34.79784 -34.77606 -33.93609 -31.82159 -31.20358 -29.84315 -29.03637 -26.36315 -24.23948 -23.62551 -23.21906 -21.83382 -21.46596 -20.38370 -19.15079 -19.09096 -18.61983 -17.92901 -17.51481 -17.30422 -17.08533 -16.79755 -16.69145 -16.53875 -16.11017 -15.89471 -15.46662 -15.26872 -14.92583 -14.65214 -14.32479 -14.27514 -14.21679 -14.04201 -13.72440 -13.54803 -13.47969 -13.14206 -13.00470 -12.54178 -12.41910 -12.19681 -12.14007 -11.95074 -11.76575 -11.29223 -11.06952 -10.99929 -10.83844 -10.76074 -10.24072 -10.10936 -9.80242 -9.19907 -8.35214 -6.40621 0.37774 0.52976 1.30554 1.34588 1.44753 1.45047 1.54058 1.63121 1.79430 2.21677 2.29683 2.63399 2.89173 2.98830 3.45088 3.81698 3.85834 4.01536 4.04937 4.10336 4.14041 4.32937 4.33539 4.38151 4.53745 4.60486 4.61833 4.71764 4.79387 4.84029 4.87979 4.91386 5.16513 5.24369 5.39097 5.40952 5.55496 5.64706 5.74110 5.80725 6.07507 6.20266 6.32924 6.37082 6.59073 6.62653 7.08668 7.16070 7.21611 7.28733 8.81885 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.002877 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.593713 B = 9730.033862 C =11385.840700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.534 4.534 8 H 0.026 0.974 9 C 0.228 3.772 10 N -0.561 5.561 11 C 0.507 3.493 12 O -0.572 6.572 13 C -0.104 4.104 14 C -0.122 4.122 15 C 0.529 3.471 16 O -0.565 6.565 17 N -0.718 5.718 18 C 0.096 3.904 19 C 0.515 3.485 20 N -0.827 5.827 21 O -0.585 6.585 22 C 0.124 3.876 23 C -0.137 4.137 24 C -0.108 4.108 25 C -0.120 4.120 26 C -0.103 4.103 27 C -0.136 4.136 28 H 0.269 0.731 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.415 0.585 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.422 0.578 39 H 0.413 0.587 40 H 0.103 0.897 41 H 0.146 0.854 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.616 -20.399 -0.141 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.572 4.572 8 H 0.044 0.956 9 C 0.107 3.893 10 N -0.287 5.287 11 C 0.298 3.702 12 O -0.451 6.451 13 C -0.144 4.144 14 C -0.162 4.162 15 C 0.316 3.684 16 O -0.444 6.444 17 N -0.373 5.373 18 C -0.031 4.031 19 C 0.299 3.701 20 N -0.392 5.392 21 O -0.466 6.466 22 C 0.033 3.967 23 C -0.157 4.157 24 C -0.126 4.126 25 C -0.138 4.138 26 C -0.121 4.121 27 C -0.156 4.156 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.254 0.746 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.254 0.746 39 H 0.245 0.755 40 H 0.121 0.879 41 H 0.164 0.836 42 H 0.176 0.824 43 H 0.175 0.825 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.233 -19.834 0.160 27.628 hybrid contribution -0.616 0.761 0.838 1.289 sum 18.616 -19.073 0.997 26.671 Atomic orbital electron populations 1.70047 1.08188 1.28360 1.51792 1.25846 0.95721 1.03314 0.93777 0.85720 0.79378 0.78175 0.79802 1.17771 1.20445 1.17520 1.21439 0.91252 0.93254 1.51282 0.95559 1.19438 0.93143 0.79317 0.97395 1.45547 1.63681 1.14850 1.04643 1.21246 0.77710 0.88644 0.82639 1.90648 1.53389 1.69008 1.32064 1.21272 1.03183 0.91525 0.98453 1.21329 1.03849 0.93602 0.97411 1.20490 0.77051 0.87743 0.83090 1.90694 1.55247 1.66248 1.32216 1.45701 1.64282 1.17639 1.09674 1.21233 1.02358 0.85523 0.93986 1.20623 0.76220 0.82372 0.90839 1.43565 1.64509 1.16960 1.14129 1.90771 1.54077 1.54255 1.47451 1.17954 0.96335 0.94748 0.87622 1.21356 0.98355 0.97403 0.98537 1.21308 0.98479 0.99981 0.92829 1.21555 0.94913 0.96894 1.00408 1.21373 1.00176 0.95367 0.95193 1.21425 0.96865 1.01416 0.95863 0.92213 0.95147 0.93731 0.88290 0.87533 0.87168 0.88004 0.74648 0.86847 0.86584 0.74596 0.75502 0.87923 0.83631 0.82391 0.82467 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.78 13.96 21.45 0.30 -60.48 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 4 H -0.25 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 7 C -0.53 -32.46 9.94 25.60 0.25 -32.20 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 9 C 0.23 11.57 4.14 85.63 0.35 11.92 16 10 N -0.56 -24.61 2.51 -635.28 -1.59 -26.21 16 11 C 0.51 21.48 7.53 87.66 0.66 22.14 16 12 O -0.57 -28.35 15.61 -3.04 -0.05 -28.40 16 13 C -0.10 -3.32 3.65 29.85 0.11 -3.21 16 14 C -0.12 -3.28 5.01 29.85 0.15 -3.13 16 15 C 0.53 12.85 7.83 87.66 0.69 13.53 16 16 O -0.56 -16.31 15.98 -3.03 -0.05 -16.36 16 17 N -0.72 -13.77 5.53 -466.80 -2.58 -16.36 16 18 C 0.10 1.25 6.15 85.63 0.53 1.77 16 19 C 0.52 6.98 8.17 87.65 0.72 7.70 16 20 N -0.83 -3.83 8.87 -173.53 -1.54 -5.37 16 21 O -0.59 -13.49 16.50 -3.05 -0.05 -13.54 16 22 C 0.12 4.56 4.42 38.15 0.17 4.73 16 23 C -0.14 -4.70 8.46 22.39 0.19 -4.51 16 24 C -0.11 -2.81 10.04 22.25 0.22 -2.58 16 25 C -0.12 -2.58 10.04 22.29 0.22 -2.36 16 26 C -0.10 -2.34 10.04 22.25 0.22 -2.12 16 27 C -0.14 -4.09 9.64 22.39 0.22 -3.87 16 28 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 29 H 0.03 1.62 6.54 -2.39 -0.02 1.60 16 30 H 0.04 2.10 7.26 -2.39 -0.02 2.08 16 31 H 0.10 3.17 6.95 -2.39 -0.02 3.15 16 32 H 0.11 3.14 7.97 -2.39 -0.02 3.12 16 33 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 34 H 0.10 2.84 8.04 -2.39 -0.02 2.82 16 35 H 0.42 8.06 7.44 -92.71 -0.69 7.37 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.42 -0.82 8.83 -92.71 -0.82 -1.63 16 39 H 0.41 1.42 8.93 -92.71 -0.83 0.60 16 40 H 0.10 3.83 7.90 -2.91 -0.02 3.81 16 41 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 43 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -88.18 380.61 0.16 -88.02 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -1.33 Total: 22.75 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.16 Total: 8.97 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -5.42 Total: -108.41 kcal Atomic # 8 Polarization: -58.14 SS G_CDS: -0.15 Total: -58.29 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -88.18 0.16 -88.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109252807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.333 kcal (2) G-P(sol) polarization free energy of solvation -88.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds