Wall clock time and date at job start Tue Mar 31 2020 17:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00038 * 2 1 4 4 H 1.48490 * 109.47328 * 240.00365 * 3 2 1 5 5 H 1.48507 * 109.46753 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46951 * 119.99961 * 3 2 1 7 7 C 1.37873 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00312 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47147 * 185.00574 * 9 7 2 11 11 C 1.46906 * 110.99952 * 75.11976 * 10 9 7 12 12 C 1.50703 * 109.46878 * 189.99892 * 11 10 9 13 13 O 1.21287 * 120.00320 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99376 * 180.02562 * 12 11 10 15 15 C 1.39929 * 119.99278 * 185.70821 * 14 12 11 16 16 C 1.38891 * 120.07481 * 34.90400 * 15 14 12 17 17 C 1.38088 * 119.92914 * 180.02562 * 16 15 14 18 18 C 1.38302 * 120.07216 * 359.74625 * 17 16 15 19 19 C 1.38269 * 120.13792 * 0.51031 * 18 17 16 20 20 C 1.38132 * 120.07014 * 359.49067 * 19 18 17 21 21 N 1.48015 * 120.03378 * 180.28245 * 20 19 18 22 22 O 1.21797 * 119.99963 * 355.12075 * 21 20 19 23 23 O 1.21799 * 120.00058 * 175.13099 * 21 20 19 24 24 C 1.46904 * 111.00009 * 199.07403 * 10 9 7 25 25 C 1.52998 * 109.47428 * 61.72187 * 24 10 9 26 26 C 1.52993 * 117.50033 * 247.28452 * 25 24 10 27 27 C 1.52993 * 117.49902 * 178.65874 * 25 24 10 28 28 H 0.97003 * 119.99915 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46651 * 65.00662 * 9 7 2 30 30 H 1.08998 * 109.47224 * 305.01356 * 9 7 2 31 31 H 1.09001 * 109.46989 * 69.99751 * 11 10 9 32 32 H 1.08997 * 109.46742 * 309.99682 * 11 10 9 33 33 H 0.96999 * 120.00293 * 5.70040 * 14 12 11 34 34 H 1.08002 * 120.03593 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.96858 * 180.02562 * 17 16 15 36 36 H 1.07997 * 119.93723 * 180.27693 * 18 17 16 37 37 H 1.08006 * 119.96395 * 179.76751 * 19 18 17 38 38 H 1.09001 * 109.47249 * 181.73016 * 24 10 9 39 39 H 1.09006 * 109.46549 * 301.72280 * 24 10 9 40 40 H 1.09007 * 115.54466 * 32.99582 * 25 24 10 41 41 H 1.08991 * 117.50147 * 0.02562 * 26 25 24 42 42 H 1.09006 * 117.49449 * 145.01899 * 26 25 24 43 43 H 1.09000 * 117.50170 * 214.98034 * 27 25 24 44 44 H 1.09000 * 117.50323 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2011 -3.6130 0.1197 11 6 2.7092 -3.7256 1.4935 12 6 3.8523 -4.7071 1.5273 13 8 4.2083 -5.2589 0.5076 14 7 4.4783 -4.9724 2.6911 15 6 5.6136 -5.7903 2.7041 16 6 6.5107 -5.7526 1.6444 17 6 7.6298 -6.5613 1.6600 18 6 7.8607 -7.4044 2.7318 19 6 6.9669 -7.4480 3.7858 20 6 5.8455 -6.6416 3.7762 21 7 4.8924 -6.6844 4.9079 22 8 5.0484 -7.4932 5.8051 23 8 3.9521 -5.9110 4.9418 24 6 1.5915 -4.8748 -0.3212 25 6 1.2029 -4.7653 -1.7970 26 6 -0.2886 -4.7752 -2.1374 27 6 0.5769 -5.9960 -2.4558 28 1 -0.4850 0.8401 0.0004 29 1 0.6930 -2.5964 -0.9318 30 1 0.5590 -2.5192 0.8414 31 1 1.9111 -4.0746 2.1486 32 1 3.0577 -2.7502 1.8330 33 1 4.1419 -4.5964 3.5195 34 1 6.3327 -5.0921 0.8086 35 1 8.3280 -6.5323 0.8365 36 1 8.7391 -8.0327 2.7439 37 1 7.1480 -8.1102 4.6197 38 1 2.3061 -5.6879 -0.1930 39 1 0.7014 -5.0760 0.2749 40 1 1.8554 -4.1433 -2.4099 41 1 -0.9931 -4.8593 -1.3100 42 1 -0.6179 -4.1594 -2.9744 43 1 0.8170 -6.1835 -3.5024 44 1 0.4414 -6.8836 -1.8379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174696447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:35 Heat of formation + Delta-G solvation = 33.236266 kcal Electronic energy + Delta-G solvation = -28602.248211 eV Core-core repulsion = 24524.547189 eV Total energy + Delta-G solvation = -4077.701023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.46015 -40.64723 -39.01488 -37.55437 -36.81561 -35.29492 -34.82311 -32.52687 -32.19762 -30.66678 -28.01456 -27.62953 -26.52365 -24.37703 -23.47724 -22.73111 -21.96101 -21.40239 -20.36354 -19.56452 -19.37009 -18.84212 -17.88754 -17.70913 -17.10834 -16.43347 -15.75879 -15.68860 -15.52125 -14.80211 -14.75656 -14.51072 -14.14027 -13.90195 -13.73269 -13.45702 -12.88894 -12.85618 -12.33263 -12.17650 -11.98356 -11.74798 -11.60692 -11.34843 -11.33319 -11.30523 -11.13310 -10.84557 -10.76798 -10.72573 -10.62428 -10.04125 -9.94415 -9.84265 -9.74887 -9.34594 -9.12989 -8.71261 -8.44339 -7.36585 -6.05393 -4.07653 -0.35994 0.65568 1.13632 1.21357 2.55709 2.71856 3.11206 3.30293 3.35442 3.37764 4.02482 4.24464 4.31212 4.39419 4.49541 4.56820 4.71513 4.79218 4.95540 5.25618 5.28178 5.30254 5.40209 5.47158 5.55384 5.56327 5.74507 5.77764 5.89942 5.93374 5.97607 6.01816 6.13525 6.17027 6.29108 6.35064 6.44064 6.51881 6.80302 7.10455 7.23158 7.29827 7.47010 7.76804 7.96395 8.09318 8.13044 8.47465 9.00243 9.56943 11.04527 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.003358 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.998744 B = 8335.505450 C = 9386.844622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.191 3.809 10 N -0.516 5.516 11 C 0.049 3.951 12 C 0.517 3.483 13 O -0.495 6.495 14 N -0.677 5.677 15 C 0.238 3.762 16 C -0.129 4.129 17 C -0.044 4.044 18 C -0.144 4.144 19 C -0.039 4.039 20 C -0.086 4.086 21 N 0.042 4.958 22 O -0.159 6.159 23 O -0.179 6.179 24 C 0.081 3.919 25 C -0.124 4.124 26 C -0.179 4.179 27 C -0.189 4.189 28 H 0.262 0.738 29 H 0.043 0.957 30 H -0.003 1.003 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.426 0.574 34 H 0.160 0.840 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.078 0.922 39 H 0.018 0.982 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.071 -14.656 4.975 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.241 5.241 11 C -0.083 4.083 12 C 0.307 3.693 13 O -0.367 6.367 14 N -0.330 5.330 15 C 0.138 3.862 16 C -0.150 4.150 17 C -0.063 4.063 18 C -0.163 4.163 19 C -0.058 4.058 20 C -0.174 4.174 21 N 0.556 4.444 22 O -0.376 6.376 23 O -0.386 6.386 24 C -0.047 4.047 25 C -0.143 4.143 26 C -0.216 4.216 27 C -0.226 4.226 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.270 0.730 34 H 0.177 0.823 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.096 0.904 39 H 0.036 0.964 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.836 -14.667 3.370 20.443 hybrid contribution -0.742 0.965 1.271 1.760 sum 13.093 -13.702 4.641 19.512 Atomic orbital electron populations 1.69943 1.06008 1.26905 1.50681 1.24966 0.94820 0.99175 0.95411 0.86603 0.79480 0.82936 0.78625 1.20213 1.21366 1.20323 1.21134 0.93482 0.89913 1.50464 0.91995 1.19854 0.89554 0.86687 0.97230 1.61874 1.40061 1.04373 1.17814 1.21890 0.93837 0.98658 0.93893 1.21667 0.84005 0.81967 0.81684 1.90664 1.64625 1.48812 1.32609 1.44551 1.26493 1.48326 1.13636 1.17620 0.87596 0.88455 0.92531 1.21405 0.92570 1.01990 0.99012 1.21541 0.95478 0.91868 0.97387 1.21150 1.00344 1.01415 0.93408 1.20889 0.90377 0.94962 0.99617 1.21006 0.97072 1.07653 0.91634 1.43463 1.00547 0.99047 1.01304 1.94522 1.79784 1.33114 1.30152 1.94391 1.22997 1.37381 1.83869 1.21766 0.96615 0.93476 0.92859 1.22134 0.95365 0.99910 0.96841 1.22980 0.94444 1.00815 1.03358 1.22921 1.06097 0.92698 1.00903 0.92838 0.93858 0.98529 0.92228 0.86107 0.72952 0.82251 0.83670 0.83632 0.82849 0.90354 0.96408 0.87027 0.89289 0.89105 0.89340 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.71 8.52 -34.44 -0.29 -14.00 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.19 4.72 4.62 -4.98 -0.02 4.70 16 10 N -0.52 -10.76 4.20 -237.51 -1.00 -11.76 16 11 C 0.05 0.86 5.28 -4.97 -0.03 0.84 16 12 C 0.52 8.33 7.23 -10.98 -0.08 8.25 16 13 O -0.50 -8.93 12.16 5.55 0.07 -8.86 16 14 N -0.68 -9.18 4.69 -9.86 -0.05 -9.23 16 15 C 0.24 2.97 6.23 -83.69 -0.52 2.45 16 16 C -0.13 -1.43 8.65 -39.40 -0.34 -1.77 16 17 C -0.04 -0.33 10.04 -39.61 -0.40 -0.73 16 18 C -0.14 -0.95 10.04 -39.55 -0.40 -1.35 16 19 C -0.04 -0.33 9.55 -39.61 -0.38 -0.71 16 20 C -0.09 -1.01 6.86 -79.76 -0.55 -1.56 16 21 N 0.04 0.56 4.45 34.05 0.15 0.71 16 22 O -0.16 -2.15 18.46 -29.46 -0.54 -2.70 16 23 O -0.18 -2.56 15.95 -29.46 -0.47 -3.03 16 24 C 0.08 1.52 4.90 -3.82 -0.02 1.51 16 25 C -0.12 -2.24 4.54 -90.63 -0.41 -2.65 16 26 C -0.18 -2.97 9.70 -26.74 -0.26 -3.23 16 27 C -0.19 -2.80 10.25 -26.74 -0.27 -3.08 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.04 1.14 6.26 -51.93 -0.32 0.81 16 30 H 0.00 -0.08 8.01 -51.93 -0.42 -0.50 16 31 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 32 H 0.12 2.19 7.41 -51.93 -0.38 1.81 16 33 H 0.43 5.35 6.26 -40.82 -0.26 5.09 16 34 H 0.16 1.98 6.55 -52.49 -0.34 1.64 16 35 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.15 1.03 7.62 -52.48 -0.40 0.63 16 38 H 0.08 1.47 5.81 -51.93 -0.30 1.17 16 39 H 0.02 0.33 7.89 -51.93 -0.41 -0.08 16 40 H 0.11 2.19 8.14 -51.93 -0.42 1.77 16 41 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -31.14 372.71 -10.33 -41.47 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.76 Total: 6.63 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -4.07 Total: -9.83 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.16 Total: -45.29 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.95 Total: -14.59 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.14 -10.33 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174696447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.703 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds