Wall clock time and date at job start Tue Mar 31 2020 17:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00038 * 2 1 4 4 H 1.48490 * 109.47328 * 240.00365 * 3 2 1 5 5 H 1.48507 * 109.46753 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46951 * 119.99961 * 3 2 1 7 7 C 1.37873 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00312 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47147 * 185.00574 * 9 7 2 11 11 C 1.46906 * 110.99952 * 75.11976 * 10 9 7 12 12 C 1.50703 * 109.46878 * 189.99892 * 11 10 9 13 13 O 1.21287 * 120.00320 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99376 * 180.02562 * 12 11 10 15 15 C 1.39929 * 119.99278 * 185.70821 * 14 12 11 16 16 C 1.38891 * 120.07481 * 34.90400 * 15 14 12 17 17 C 1.38088 * 119.92914 * 180.02562 * 16 15 14 18 18 C 1.38302 * 120.07216 * 359.74625 * 17 16 15 19 19 C 1.38269 * 120.13792 * 0.51031 * 18 17 16 20 20 C 1.38132 * 120.07014 * 359.49067 * 19 18 17 21 21 N 1.48015 * 120.03378 * 180.28245 * 20 19 18 22 22 O 1.21797 * 119.99963 * 355.12075 * 21 20 19 23 23 O 1.21799 * 120.00058 * 175.13099 * 21 20 19 24 24 C 1.46904 * 111.00009 * 199.07403 * 10 9 7 25 25 C 1.52998 * 109.47428 * 61.72187 * 24 10 9 26 26 C 1.52993 * 117.50033 * 247.28452 * 25 24 10 27 27 C 1.52993 * 117.49902 * 178.65874 * 25 24 10 28 28 H 0.97003 * 119.99915 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46651 * 65.00662 * 9 7 2 30 30 H 1.08998 * 109.47224 * 305.01356 * 9 7 2 31 31 H 1.09001 * 109.46989 * 69.99751 * 11 10 9 32 32 H 1.08997 * 109.46742 * 309.99682 * 11 10 9 33 33 H 0.96999 * 120.00293 * 5.70040 * 14 12 11 34 34 H 1.08002 * 120.03593 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.96858 * 180.02562 * 17 16 15 36 36 H 1.07997 * 119.93723 * 180.27693 * 18 17 16 37 37 H 1.08006 * 119.96395 * 179.76751 * 19 18 17 38 38 H 1.09001 * 109.47249 * 181.73016 * 24 10 9 39 39 H 1.09006 * 109.46549 * 301.72280 * 24 10 9 40 40 H 1.09007 * 115.54466 * 32.99582 * 25 24 10 41 41 H 1.08991 * 117.50147 * 0.02562 * 26 25 24 42 42 H 1.09006 * 117.49449 * 145.01899 * 26 25 24 43 43 H 1.09000 * 117.50170 * 214.98034 * 27 25 24 44 44 H 1.09000 * 117.50323 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2011 -3.6130 0.1197 11 6 2.7092 -3.7256 1.4935 12 6 3.8523 -4.7071 1.5273 13 8 4.2083 -5.2589 0.5076 14 7 4.4783 -4.9724 2.6911 15 6 5.6136 -5.7903 2.7041 16 6 6.5107 -5.7526 1.6444 17 6 7.6298 -6.5613 1.6600 18 6 7.8607 -7.4044 2.7318 19 6 6.9669 -7.4480 3.7858 20 6 5.8455 -6.6416 3.7762 21 7 4.8924 -6.6844 4.9079 22 8 5.0484 -7.4932 5.8051 23 8 3.9521 -5.9110 4.9418 24 6 1.5915 -4.8748 -0.3212 25 6 1.2029 -4.7653 -1.7970 26 6 -0.2886 -4.7752 -2.1374 27 6 0.5769 -5.9960 -2.4558 28 1 -0.4850 0.8401 0.0004 29 1 0.6930 -2.5964 -0.9318 30 1 0.5590 -2.5192 0.8414 31 1 1.9111 -4.0746 2.1486 32 1 3.0577 -2.7502 1.8330 33 1 4.1419 -4.5964 3.5195 34 1 6.3327 -5.0921 0.8086 35 1 8.3280 -6.5323 0.8365 36 1 8.7391 -8.0327 2.7439 37 1 7.1480 -8.1102 4.6197 38 1 2.3061 -5.6879 -0.1930 39 1 0.7014 -5.0760 0.2749 40 1 1.8554 -4.1433 -2.4099 41 1 -0.9931 -4.8593 -1.3100 42 1 -0.6179 -4.1594 -2.9744 43 1 0.8170 -6.1835 -3.5024 44 1 0.4414 -6.8836 -1.8379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174696447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:29 Heat of formation + Delta-G solvation = 15.186741 kcal Electronic energy + Delta-G solvation = -28603.030898 eV Core-core repulsion = 24524.547189 eV Total energy + Delta-G solvation = -4078.483709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.43732 -41.75594 -40.06073 -38.92803 -37.85563 -36.77675 -35.96765 -34.57142 -32.99929 -31.62507 -29.68271 -29.19822 -27.47990 -26.03203 -24.58314 -23.68672 -23.21277 -22.93171 -21.59244 -21.07175 -20.31422 -19.84432 -18.83243 -18.70213 -18.52688 -18.30875 -17.05592 -16.76760 -16.63528 -16.33680 -15.86471 -15.74891 -15.50378 -15.21318 -15.08861 -14.48867 -14.33651 -14.14374 -13.59762 -13.52432 -13.29250 -13.10088 -12.89510 -12.76696 -12.68984 -12.50496 -12.40576 -12.37784 -12.31458 -12.27578 -11.95413 -11.70704 -11.43161 -11.15910 -11.09788 -10.69701 -10.61325 -10.47040 -9.62029 -9.08433 -8.16497 -6.26499 -1.27767 -0.09929 0.24855 0.30834 1.35027 1.42432 1.44575 1.52328 1.62986 2.34119 2.41627 2.89551 3.15858 3.20725 3.22792 3.48927 3.65226 3.90005 3.94548 3.96288 4.03822 4.09414 4.15990 4.26810 4.44848 4.48146 4.53886 4.63616 4.71601 4.75310 4.85407 4.94631 5.00926 5.07152 5.14983 5.17044 5.20720 5.23772 5.27143 5.41143 5.55735 5.68322 5.98932 6.08942 6.28337 6.41948 6.55330 6.86000 6.88473 7.42850 8.93116 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.003358 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.998744 B = 8335.505450 C = 9386.844622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.210 3.790 10 N -0.525 5.525 11 C 0.046 3.954 12 C 0.528 3.472 13 O -0.518 6.518 14 N -0.671 5.671 15 C 0.208 3.792 16 C -0.146 4.146 17 C -0.028 4.028 18 C -0.120 4.120 19 C -0.036 4.036 20 C -0.098 4.098 21 N 0.042 4.958 22 O -0.154 6.154 23 O -0.217 6.217 24 C 0.088 3.912 25 C -0.152 4.152 26 C -0.185 4.185 27 C -0.154 4.154 28 H 0.264 0.736 29 H 0.023 0.977 30 H -0.030 1.030 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.428 0.572 34 H 0.140 0.860 35 H 0.181 0.819 36 H 0.193 0.807 37 H 0.176 0.824 38 H 0.082 0.918 39 H 0.015 0.985 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.079 -16.443 4.893 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.078 0.922 9 C 0.084 3.916 10 N -0.249 5.249 11 C -0.085 4.085 12 C 0.317 3.683 13 O -0.392 6.392 14 N -0.324 5.324 15 C 0.109 3.891 16 C -0.167 4.167 17 C -0.047 4.047 18 C -0.138 4.138 19 C -0.055 4.055 20 C -0.186 4.186 21 N 0.552 4.448 22 O -0.375 6.375 23 O -0.417 6.417 24 C -0.040 4.040 25 C -0.171 4.171 26 C -0.222 4.222 27 C -0.191 4.191 28 H 0.072 0.928 29 H 0.041 0.959 30 H -0.012 1.012 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.273 0.727 34 H 0.158 0.842 35 H 0.198 0.802 36 H 0.210 0.790 37 H 0.193 0.807 38 H 0.100 0.900 39 H 0.034 0.966 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.835 -16.438 3.311 23.761 hybrid contribution -1.510 1.369 1.318 2.428 sum 15.324 -15.069 4.629 21.985 Atomic orbital electron populations 1.70069 1.07545 1.27810 1.51623 1.25792 0.95612 1.02716 0.94904 0.85551 0.78251 0.78493 0.79005 1.19727 1.21009 1.19168 1.21411 0.93485 0.91062 1.50205 0.92250 1.19455 0.89400 0.87731 0.94979 1.61766 1.39024 1.04391 1.19761 1.21858 0.94968 0.99209 0.92475 1.21059 0.83527 0.81485 0.82209 1.90642 1.65262 1.49815 1.33462 1.44250 1.27000 1.48535 1.12590 1.17828 0.87730 0.89547 0.93950 1.21427 0.93973 1.03078 0.98176 1.21992 0.94158 0.89980 0.98523 1.21700 1.00550 1.00199 0.91394 1.21364 0.89189 0.94061 1.00928 1.21237 0.97739 1.08882 0.90700 1.43768 1.00676 0.98652 1.01703 1.94484 1.79590 1.32765 1.30627 1.94390 1.24318 1.38354 1.84613 1.21729 0.96350 0.92402 0.93473 1.22058 0.96034 1.02731 0.96234 1.22994 0.93463 1.02431 1.03350 1.23010 1.02405 0.91745 1.01942 0.92762 0.95890 1.01233 0.91436 0.86934 0.72726 0.84183 0.80212 0.78998 0.80652 0.90035 0.96647 0.89131 0.89707 0.89021 0.87211 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.52 -28.99 8.52 25.60 0.22 -28.78 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.21 10.92 4.62 85.56 0.40 11.31 16 10 N -0.52 -22.96 4.20 -905.34 -3.80 -26.76 16 11 C 0.05 1.73 5.28 85.56 0.45 2.18 16 12 C 0.53 17.74 7.23 87.66 0.63 18.37 16 13 O -0.52 -19.19 12.16 -3.05 -0.04 -19.23 16 14 N -0.67 -18.94 4.69 -303.49 -1.42 -20.36 16 15 C 0.21 5.14 6.23 38.15 0.24 5.38 16 16 C -0.15 -3.06 8.65 22.39 0.19 -2.86 16 17 C -0.03 -0.32 10.04 22.25 0.22 -0.10 16 18 C -0.12 -0.98 10.04 22.29 0.22 -0.75 16 19 C -0.04 -0.49 9.55 22.25 0.21 -0.28 16 20 C -0.10 -2.18 6.86 36.50 0.25 -1.93 16 21 N 0.04 1.11 4.45 -46.17 -0.21 0.90 16 22 O -0.15 -4.05 18.46 18.89 0.35 -3.70 16 23 O -0.22 -6.47 15.95 18.89 0.30 -6.17 16 24 C 0.09 3.44 4.90 86.30 0.42 3.86 16 25 C -0.15 -5.61 4.54 -10.80 -0.05 -5.66 16 26 C -0.19 -6.22 9.70 30.59 0.30 -5.92 16 27 C -0.15 -4.37 10.25 30.59 0.31 -4.06 16 28 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.02 1.28 6.26 -2.38 -0.01 1.26 16 30 H -0.03 -1.69 8.01 -2.39 -0.02 -1.71 16 31 H 0.07 2.40 8.12 -2.39 -0.02 2.38 16 32 H 0.11 4.35 7.41 -2.39 -0.02 4.33 16 33 H 0.43 11.47 6.26 -92.71 -0.58 10.89 16 34 H 0.14 3.51 6.55 -2.91 -0.02 3.49 16 35 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.19 -0.08 8.06 -2.91 -0.02 -0.11 16 37 H 0.18 1.63 7.62 -2.91 -0.02 1.61 16 38 H 0.08 3.13 5.81 -2.39 -0.01 3.12 16 39 H 0.02 0.60 7.89 -2.38 -0.02 0.58 16 40 H 0.09 3.71 8.14 -2.38 -0.02 3.69 16 41 H 0.08 2.89 8.04 -2.39 -0.02 2.87 16 42 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 43 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -70.57 372.71 2.44 -68.14 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.46 Total: 24.47 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 4.49 Total: -8.30 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -5.15 Total: -100.85 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: 0.61 Total: -29.09 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.57 2.44 -68.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174696447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.325 kcal (2) G-P(sol) polarization free energy of solvation -70.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds