Wall clock time and date at job start Tue Mar 31 2020 17:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99744 * 2 1 4 4 H 1.48500 * 109.47389 * 270.00279 * 3 2 1 5 5 H 1.48500 * 109.46805 * 30.00615 * 3 2 1 6 6 H 1.48501 * 109.46822 * 150.00063 * 3 2 1 7 7 C 1.37873 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00509 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99719 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47162 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99987 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99887 * 179.97438 * 11 10 9 14 14 C 1.39292 * 120.00200 * 185.59043 * 13 11 10 15 15 C 1.38842 * 120.16188 * 25.20910 * 14 13 11 16 16 C 1.38025 * 120.06925 * 180.02562 * 15 14 13 17 17 C 1.38559 * 120.40465 * 359.97438 * 16 15 14 18 18 C 1.37794 * 120.33005 * 0.02562 * 17 16 15 19 19 C 1.39689 * 119.92295 * 359.97438 * 18 17 16 20 20 C 1.47522 * 120.19913 * 179.97438 * 19 18 17 21 21 O 1.21587 * 119.99785 * 185.29115 * 20 19 18 22 22 N 1.34776 * 120.00166 * 5.29382 * 20 19 18 23 23 C 1.46495 * 120.00112 * 179.97438 * 22 20 19 24 24 C 1.52995 * 109.47166 * 179.97438 * 23 22 20 25 25 C 1.50705 * 109.47377 * 180.02562 * 24 23 22 26 26 N 1.34776 * 120.00322 * 180.02562 * 25 24 23 27 27 O 1.21287 * 119.99611 * 0.02562 * 25 24 23 28 28 H 0.96998 * 120.00120 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47464 * 59.99758 * 9 7 2 30 30 H 1.09004 * 109.47268 * 299.99511 * 9 7 2 31 31 H 1.09003 * 109.47004 * 59.99630 * 10 9 7 32 32 H 1.09004 * 109.46755 * 299.99979 * 10 9 7 33 33 H 0.97002 * 119.99898 * 5.58815 * 13 11 10 34 34 H 1.08002 * 119.97020 * 0.02562 * 15 14 13 35 35 H 1.08003 * 119.79847 * 180.02562 * 16 15 14 36 36 H 1.08002 * 119.83533 * 180.02562 * 17 16 15 37 37 H 1.08005 * 120.04303 * 179.71944 * 18 17 16 38 38 H 0.97005 * 120.00027 * 359.97438 * 22 20 19 39 39 H 1.09001 * 109.47403 * 300.00104 * 23 22 20 40 40 H 1.09005 * 109.46813 * 60.00010 * 23 22 20 41 41 H 1.08997 * 109.47577 * 300.00057 * 24 23 22 42 42 H 1.09005 * 109.46907 * 60.00484 * 24 23 22 43 43 H 0.96997 * 119.99676 * 0.02562 * 26 25 24 44 44 H 0.97001 * 119.99845 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5286 -2.6364 -0.0022 12 8 6.1350 -1.5861 -0.0036 13 7 6.2025 -3.8036 -0.0018 14 6 7.5906 -3.8064 0.1146 15 6 8.2408 -2.7474 0.7338 16 6 9.6164 -2.7519 0.8476 17 6 10.3580 -3.8099 0.3471 18 6 9.7297 -4.8694 -0.2705 19 6 8.3383 -4.8790 -0.3932 20 6 7.6594 -6.0099 -1.0538 21 8 6.4592 -5.9709 -1.2447 22 7 8.3694 -7.0863 -1.4456 23 6 7.6952 -8.2096 -2.1012 24 6 8.7214 -9.2921 -2.4415 25 6 8.0279 -10.4474 -3.1165 26 7 8.7380 -11.5238 -3.5084 27 8 6.8307 -10.4085 -3.3069 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6803 0.8888 30 1 3.8745 -0.6800 -0.8912 31 1 3.6579 -3.1505 -0.8907 32 1 3.6586 -3.1501 0.8893 33 1 5.7209 -4.6417 -0.0825 34 1 7.6698 -1.9192 1.1269 35 1 10.1177 -1.9260 1.3305 36 1 11.4338 -3.8041 0.4416 37 1 10.3127 -5.6895 -0.6630 38 1 9.3270 -7.1173 -1.2936 39 1 6.9406 -8.6216 -1.4311 40 1 7.2170 -7.8619 -3.0170 41 1 9.4757 -8.8799 -3.1118 42 1 9.1999 -9.6398 -1.5259 43 1 9.6954 -11.5550 -3.3557 44 1 8.2916 -12.2672 -3.9431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291599731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:40 Heat of formation + Delta-G solvation = -87.774275 kcal Electronic energy + Delta-G solvation = -27319.516431 eV Core-core repulsion = 23236.567997 eV Total energy + Delta-G solvation = -4082.948434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99024 -40.09398 -39.36899 -38.07863 -35.74375 -34.45788 -34.21909 -33.50384 -32.16507 -31.40618 -30.48280 -29.64059 -26.20488 -25.15571 -23.62028 -22.81669 -21.31248 -20.98059 -20.77016 -19.59377 -18.38391 -17.70240 -17.38891 -17.30357 -17.09009 -16.47178 -16.22657 -15.89003 -15.39121 -15.17496 -15.04930 -14.57368 -14.43721 -14.08725 -13.95261 -13.82651 -13.45285 -13.31725 -13.00205 -12.55714 -12.47602 -12.41738 -12.22312 -12.00968 -11.70279 -11.38026 -10.95571 -10.61069 -10.52215 -10.25915 -10.15188 -10.08102 -10.00441 -9.75380 -9.50744 -9.29883 -9.15509 -9.04527 -8.47782 -8.06165 -5.99302 -3.98105 0.67371 1.22198 2.08890 2.54979 2.67489 2.97045 3.19682 3.33636 3.40377 3.46618 3.56534 3.78926 4.06703 4.42796 4.45310 4.48052 4.53529 4.56530 4.82175 4.84724 5.07828 5.20723 5.32535 5.35682 5.39664 5.49161 5.62391 5.74423 5.95227 6.04542 6.09352 6.11303 6.19541 6.20647 6.35483 6.47012 6.70669 6.71946 6.93422 7.10210 7.36829 7.44077 7.67182 7.70235 7.81071 7.94540 8.44796 8.57471 9.04097 9.63140 11.13532 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.002451 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.411489 B =11421.478446 C =13515.590015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.122 4.122 11 C 0.511 3.489 12 O -0.520 6.520 13 N -0.668 5.668 14 C 0.230 3.770 15 C -0.148 4.148 16 C -0.067 4.067 17 C -0.160 4.160 18 C -0.064 4.064 19 C -0.192 4.192 20 C 0.568 3.432 21 O -0.533 6.533 22 N -0.730 5.730 23 C 0.132 3.868 24 C -0.155 4.155 25 C 0.520 3.480 26 N -0.857 5.857 27 O -0.533 6.533 28 H 0.263 0.737 29 H 0.024 0.976 30 H 0.020 0.980 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.425 0.575 34 H 0.155 0.845 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.399 0.601 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.402 0.598 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.545 -22.158 -2.228 36.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.162 4.162 11 C 0.301 3.699 12 O -0.395 6.395 13 N -0.317 5.317 14 C 0.130 3.870 15 C -0.168 4.168 16 C -0.086 4.086 17 C -0.179 4.179 18 C -0.084 4.084 19 C -0.198 4.198 20 C 0.357 3.643 21 O -0.411 6.411 22 N -0.382 5.382 23 C 0.008 3.992 24 C -0.196 4.196 25 C 0.304 3.696 26 N -0.421 5.421 27 O -0.409 6.409 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.269 0.731 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.234 0.766 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.230 0.770 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 27.995 -21.078 -2.418 35.126 hybrid contribution 1.109 -0.015 -0.210 1.129 sum 29.104 -21.093 -2.628 36.039 Atomic orbital electron populations 1.69914 1.06274 1.26932 1.51041 1.24976 0.94725 0.99207 0.94379 0.86787 0.80566 0.83411 0.78723 1.20252 1.21457 1.18563 1.21102 0.89168 0.94669 1.51292 0.90803 1.19393 0.96610 0.89890 0.97715 1.21726 0.86758 1.03627 1.04041 1.21897 0.92152 0.82273 0.73534 1.90600 1.70401 1.31572 1.46918 1.44376 1.04473 1.12249 1.70586 1.17904 0.84080 0.93337 0.91725 1.21581 0.95041 0.99739 1.00476 1.21280 0.93496 0.97519 0.96273 1.20955 1.00011 0.94805 1.02172 1.20957 0.92089 0.98166 0.97145 1.19509 0.93986 0.97661 1.08662 1.18137 0.86581 0.81813 0.77763 1.90645 1.14510 1.80117 1.55843 1.45767 1.11783 1.18403 1.62283 1.21050 0.94076 0.84851 0.99174 1.21817 1.00063 0.95050 1.02657 1.20369 0.87407 0.83685 0.78134 1.43865 1.12714 1.21171 1.64349 1.90841 1.14807 1.80330 1.54880 0.92728 0.95732 0.96154 0.88960 0.89009 0.73077 0.82758 0.85314 0.85607 0.85821 0.76565 0.90146 0.90179 0.87936 0.87916 0.77007 0.76555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.50 13.96 55.43 0.77 -27.72 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.90 27.47 -169.99 -4.67 18.23 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 7 C -0.52 -15.38 9.66 -34.44 -0.33 -15.71 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.52 5.64 -27.88 -0.16 -2.68 16 11 C 0.51 9.96 7.63 -10.99 -0.08 9.88 16 12 O -0.52 -11.37 13.16 5.56 0.07 -11.29 16 13 N -0.67 -11.07 4.85 -9.69 -0.05 -11.12 16 14 C 0.23 3.43 6.43 -83.49 -0.54 2.89 16 15 C -0.15 -2.12 8.70 -39.44 -0.34 -2.46 16 16 C -0.07 -0.71 10.03 -39.54 -0.40 -1.11 16 17 C -0.16 -1.36 10.02 -39.63 -0.40 -1.75 16 18 C -0.06 -0.54 9.52 -39.20 -0.37 -0.91 16 19 C -0.19 -2.29 5.89 -104.81 -0.62 -2.91 16 20 C 0.57 6.88 7.75 -12.48 -0.10 6.78 16 21 O -0.53 -8.43 13.81 5.29 0.07 -8.35 16 22 N -0.73 -5.59 5.50 -61.36 -0.34 -5.93 16 23 C 0.13 1.06 4.96 -4.05 -0.02 1.04 16 24 C -0.16 -0.56 5.81 -27.88 -0.16 -0.73 16 25 C 0.52 3.32 8.10 -10.98 -0.09 3.23 16 26 N -0.86 -2.12 8.87 31.22 0.28 -1.85 16 27 O -0.53 -6.36 16.82 5.55 0.09 -6.27 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 30 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 31 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 32 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 33 H 0.42 6.76 6.01 -40.82 -0.25 6.52 16 34 H 0.16 2.54 5.81 -52.49 -0.31 2.23 16 35 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.54 6.44 -52.48 -0.34 0.20 16 38 H 0.40 1.61 6.53 -40.82 -0.27 1.34 16 39 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.40 -0.36 8.83 -40.82 -0.36 -0.72 16 44 H 0.40 0.93 8.93 -40.82 -0.36 0.56 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -39.97 372.57 -7.55 -47.52 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.61 Total: 3.67 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -3.80 Total: -2.51 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.67 Total: -46.62 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.24 Total: -25.91 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.67 Total: 18.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.97 -7.55 -47.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291599731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.254 kcal (2) G-P(sol) polarization free energy of solvation -39.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds