Wall clock time and date at job start Tue Mar 31 2020 17:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99744 * 2 1 4 4 H 1.48500 * 109.47389 * 270.00279 * 3 2 1 5 5 H 1.48500 * 109.46805 * 30.00615 * 3 2 1 6 6 H 1.48501 * 109.46822 * 150.00063 * 3 2 1 7 7 C 1.37873 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00509 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99719 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47162 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99987 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99887 * 179.97438 * 11 10 9 14 14 C 1.39292 * 120.00200 * 185.59043 * 13 11 10 15 15 C 1.38842 * 120.16188 * 25.20910 * 14 13 11 16 16 C 1.38025 * 120.06925 * 180.02562 * 15 14 13 17 17 C 1.38559 * 120.40465 * 359.97438 * 16 15 14 18 18 C 1.37794 * 120.33005 * 0.02562 * 17 16 15 19 19 C 1.39689 * 119.92295 * 359.97438 * 18 17 16 20 20 C 1.47522 * 120.19913 * 179.97438 * 19 18 17 21 21 O 1.21587 * 119.99785 * 185.29115 * 20 19 18 22 22 N 1.34776 * 120.00166 * 5.29382 * 20 19 18 23 23 C 1.46495 * 120.00112 * 179.97438 * 22 20 19 24 24 C 1.52995 * 109.47166 * 179.97438 * 23 22 20 25 25 C 1.50705 * 109.47377 * 180.02562 * 24 23 22 26 26 N 1.34776 * 120.00322 * 180.02562 * 25 24 23 27 27 O 1.21287 * 119.99611 * 0.02562 * 25 24 23 28 28 H 0.96998 * 120.00120 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47464 * 59.99758 * 9 7 2 30 30 H 1.09004 * 109.47268 * 299.99511 * 9 7 2 31 31 H 1.09003 * 109.47004 * 59.99630 * 10 9 7 32 32 H 1.09004 * 109.46755 * 299.99979 * 10 9 7 33 33 H 0.97002 * 119.99898 * 5.58815 * 13 11 10 34 34 H 1.08002 * 119.97020 * 0.02562 * 15 14 13 35 35 H 1.08003 * 119.79847 * 180.02562 * 16 15 14 36 36 H 1.08002 * 119.83533 * 180.02562 * 17 16 15 37 37 H 1.08005 * 120.04303 * 179.71944 * 18 17 16 38 38 H 0.97005 * 120.00027 * 359.97438 * 22 20 19 39 39 H 1.09001 * 109.47403 * 300.00104 * 23 22 20 40 40 H 1.09005 * 109.46813 * 60.00010 * 23 22 20 41 41 H 1.08997 * 109.47577 * 300.00057 * 24 23 22 42 42 H 1.09005 * 109.46907 * 60.00484 * 24 23 22 43 43 H 0.96997 * 119.99676 * 0.02562 * 26 25 24 44 44 H 0.97001 * 119.99845 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5286 -2.6364 -0.0022 12 8 6.1350 -1.5861 -0.0036 13 7 6.2025 -3.8036 -0.0018 14 6 7.5906 -3.8064 0.1146 15 6 8.2408 -2.7474 0.7338 16 6 9.6164 -2.7519 0.8476 17 6 10.3580 -3.8099 0.3471 18 6 9.7297 -4.8694 -0.2705 19 6 8.3383 -4.8790 -0.3932 20 6 7.6594 -6.0099 -1.0538 21 8 6.4592 -5.9709 -1.2447 22 7 8.3694 -7.0863 -1.4456 23 6 7.6952 -8.2096 -2.1012 24 6 8.7214 -9.2921 -2.4415 25 6 8.0279 -10.4474 -3.1165 26 7 8.7380 -11.5238 -3.5084 27 8 6.8307 -10.4085 -3.3069 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6803 0.8888 30 1 3.8745 -0.6800 -0.8912 31 1 3.6579 -3.1505 -0.8907 32 1 3.6586 -3.1501 0.8893 33 1 5.7209 -4.6417 -0.0825 34 1 7.6698 -1.9192 1.1269 35 1 10.1177 -1.9260 1.3305 36 1 11.4338 -3.8041 0.4416 37 1 10.3127 -5.6895 -0.6630 38 1 9.3270 -7.1173 -1.2936 39 1 6.9406 -8.6216 -1.4311 40 1 7.2170 -7.8619 -3.0170 41 1 9.4757 -8.8799 -3.1118 42 1 9.1999 -9.6398 -1.5259 43 1 9.6954 -11.5550 -3.3557 44 1 8.2916 -12.2672 -3.9431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291599731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:39 Heat of formation + Delta-G solvation = -121.635656 kcal Electronic energy + Delta-G solvation = -27320.984770 eV Core-core repulsion = 23236.567997 eV Total energy + Delta-G solvation = -4084.416773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.05760 -40.84688 -40.34680 -39.06693 -36.62742 -35.71262 -35.51789 -34.65999 -33.45437 -32.91186 -31.13605 -30.78095 -28.05744 -25.91588 -24.53349 -24.05306 -22.57695 -22.08687 -21.36556 -21.06013 -19.28553 -19.11068 -18.39818 -17.94755 -17.88084 -17.77684 -17.06813 -16.91320 -16.63553 -16.28825 -15.96380 -15.93160 -15.64602 -15.34261 -14.87079 -14.76452 -14.63115 -14.55023 -14.39174 -14.19131 -13.65408 -13.47636 -13.04508 -12.96849 -12.92813 -12.52855 -12.47581 -12.17168 -12.02499 -11.79571 -11.66606 -11.45146 -11.21914 -11.01628 -10.80675 -10.71300 -10.64906 -10.33051 -9.91662 -9.10869 -8.33556 -6.37703 -0.22055 0.32493 1.32740 1.33291 1.49000 1.54088 1.64854 1.78010 1.89683 2.07064 2.33366 2.78925 2.88641 3.01274 3.58573 3.69721 3.75776 3.86022 4.09287 4.14098 4.18413 4.26438 4.36223 4.41311 4.47129 4.50043 4.57120 4.85140 4.85722 4.91859 4.95993 5.14160 5.25270 5.29153 5.31691 5.37062 5.47090 5.53917 5.57448 5.91188 5.97416 6.20057 6.34763 6.45084 6.51289 6.67799 7.00044 7.16916 7.27150 7.38331 8.82355 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.002451 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.411489 B =11421.478446 C =13515.590015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.534 4.534 8 H 0.046 0.954 9 C 0.009 3.991 10 C -0.118 4.118 11 C 0.515 3.485 12 O -0.551 6.551 13 N -0.660 5.660 14 C 0.185 3.815 15 C -0.175 4.175 16 C -0.066 4.066 17 C -0.142 4.142 18 C -0.048 4.048 19 C -0.194 4.194 20 C 0.560 3.440 21 O -0.581 6.581 22 N -0.700 5.700 23 C 0.132 3.868 24 C -0.139 4.139 25 C 0.513 3.487 26 N -0.835 5.835 27 O -0.602 6.602 28 H 0.268 0.732 29 H 0.018 0.982 30 H 0.012 0.988 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.425 0.575 34 H 0.122 0.878 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.177 0.823 38 H 0.422 0.578 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.422 0.578 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.217 -23.449 -2.301 42.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.572 4.572 8 H 0.064 0.936 9 C -0.029 4.029 10 C -0.157 4.157 11 C 0.305 3.695 12 O -0.429 6.429 13 N -0.309 5.309 14 C 0.087 3.913 15 C -0.195 4.195 16 C -0.085 4.085 17 C -0.160 4.160 18 C -0.067 4.067 19 C -0.200 4.200 20 C 0.349 3.651 21 O -0.463 6.463 22 N -0.354 5.354 23 C 0.008 3.992 24 C -0.179 4.179 25 C 0.298 3.702 26 N -0.399 5.399 27 O -0.483 6.483 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.270 0.730 34 H 0.140 0.860 35 H 0.168 0.832 36 H 0.190 0.810 37 H 0.194 0.806 38 H 0.261 0.739 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.254 0.746 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 33.812 -22.455 -2.489 40.666 hybrid contribution -0.507 0.198 -0.196 0.578 sum 33.306 -22.257 -2.685 40.148 Atomic orbital electron populations 1.70034 1.07870 1.28225 1.52233 1.25865 0.95603 1.03089 0.94055 0.85748 0.79289 0.79000 0.79199 1.19378 1.20059 1.18185 1.21393 0.91173 0.93766 1.50819 0.93617 1.19211 0.94066 0.92800 0.96795 1.21533 0.88449 1.00796 1.04945 1.21414 0.91429 0.82884 0.73781 1.90585 1.70706 1.32641 1.48938 1.44078 1.05818 1.10956 1.70081 1.18227 0.83046 0.95412 0.94588 1.21458 0.96780 0.99155 1.02144 1.21610 0.91929 0.99110 0.95854 1.21494 1.02048 0.93049 0.99417 1.21545 0.90407 0.99448 0.95257 1.19662 0.95529 0.96474 1.08339 1.18368 0.86200 0.82804 0.77710 1.90623 1.16721 1.81101 1.57810 1.45486 1.12628 1.16804 1.60459 1.20943 0.95255 0.85868 0.97124 1.21770 0.98825 0.92480 1.04846 1.20898 0.86726 0.84900 0.77655 1.43724 1.13687 1.19964 1.62559 1.90826 1.17829 1.81764 1.57903 0.92271 0.96366 0.97004 0.88587 0.87790 0.72999 0.85980 0.83196 0.81019 0.80609 0.73862 0.92820 0.93223 0.84361 0.84189 0.74630 0.76347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.11 13.96 21.45 0.30 -60.81 16 2 C 0.01 0.71 5.47 84.65 0.46 1.18 16 3 Si 0.94 48.11 27.47 68.60 1.88 50.00 16 4 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.26 -12.91 6.54 99.48 0.65 -12.26 16 7 C -0.53 -32.52 9.66 25.60 0.25 -32.27 16 8 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 9 C 0.01 0.49 3.33 29.85 0.10 0.59 16 10 C -0.12 -5.11 5.64 29.85 0.17 -4.94 16 11 C 0.51 21.16 7.63 87.66 0.67 21.82 16 12 O -0.55 -25.28 13.16 -3.02 -0.04 -25.32 16 13 N -0.66 -23.05 4.85 -302.96 -1.47 -24.53 16 14 C 0.19 5.58 6.43 38.59 0.25 5.83 16 15 C -0.17 -5.03 8.70 22.36 0.19 -4.84 16 16 C -0.07 -1.23 10.03 22.30 0.22 -1.01 16 17 C -0.14 -1.63 10.02 22.24 0.22 -1.40 16 18 C -0.05 -0.56 9.52 22.52 0.21 -0.34 16 19 C -0.19 -4.27 5.89 -19.99 -0.12 -4.39 16 20 C 0.56 13.02 7.75 86.69 0.67 13.69 16 21 O -0.58 -19.12 13.81 -3.99 -0.06 -19.18 16 22 N -0.70 -8.79 5.50 -466.30 -2.57 -11.36 16 23 C 0.13 2.00 4.96 86.38 0.43 2.43 16 24 C -0.14 -0.52 5.81 29.85 0.17 -0.35 16 25 C 0.51 5.75 8.10 87.66 0.71 6.46 16 26 N -0.84 -2.01 8.87 -173.52 -1.54 -3.55 16 27 O -0.60 -14.89 16.82 -3.05 -0.05 -14.94 16 28 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 29 H 0.02 0.97 7.16 -2.39 -0.02 0.95 16 30 H 0.01 0.63 7.53 -2.39 -0.02 0.61 16 31 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 32 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 33 H 0.43 14.45 6.01 -92.71 -0.56 13.90 16 34 H 0.12 4.28 5.81 -2.91 -0.02 4.26 16 35 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 37 H 0.18 0.16 6.44 -2.91 -0.02 0.14 16 38 H 0.42 1.11 6.53 -92.70 -0.61 0.50 16 39 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 40 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 41 H 0.14 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.14 -0.44 8.14 -2.38 -0.02 -0.46 16 43 H 0.42 -2.41 8.83 -92.71 -0.82 -3.22 16 44 H 0.41 1.16 8.93 -92.71 -0.83 0.33 16 Total: -1.00 -96.19 372.57 -0.70 -96.89 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -1.77 Total: 10.35 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 4.62 Total: 2.44 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -5.28 Total: -100.25 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: -0.15 Total: -59.43 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.88 Total: 50.00 kcal Total: -96.19 -0.70 -96.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291599731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.750 kcal (2) G-P(sol) polarization free energy of solvation -96.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds