Wall clock time and date at job start Tue Mar 31 2020 17:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46731 * 269.99653 * 3 2 1 5 5 H 1.48498 * 109.47318 * 29.99636 * 3 2 1 6 6 H 1.48501 * 109.47431 * 149.99871 * 3 2 1 7 7 C 1.37872 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00393 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00013 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47104 * 180.02562 * 9 7 2 11 11 C 1.30072 * 120.00162 * 115.12841 * 10 9 7 12 12 O 1.35103 * 119.99836 * 187.11203 * 11 10 9 13 13 N 1.37568 * 119.99872 * 7.10912 * 11 10 9 14 14 C 1.39335 * 120.00129 * 179.17208 * 13 11 10 15 15 C 1.39163 * 119.92483 * 36.37551 * 14 13 11 16 16 C 1.37641 * 120.07006 * 179.97438 * 15 14 13 17 17 C 1.39776 * 119.92750 * 359.97438 * 16 15 14 18 18 C 1.47564 * 120.06873 * 179.97438 * 17 16 15 19 19 O 1.21591 * 120.00350 * 33.55337 * 18 17 16 20 20 N 1.34779 * 120.00041 * 213.54237 * 18 17 16 21 21 C 1.47166 * 120.94361 * 176.41688 * 20 18 17 22 22 C 1.53294 * 108.37607 * 230.50064 * 21 20 18 23 23 O 1.42961 * 109.26705 * 307.77728 * 22 21 20 24 24 C 1.42959 * 114.16595 * 62.55178 * 23 22 21 25 25 C 1.47150 * 120.98140 * 356.46842 * 20 18 17 26 26 C 1.39772 * 119.85702 * 0.25528 * 17 16 15 27 27 C 1.37639 * 119.92138 * 359.48976 * 26 17 16 28 28 H 0.96998 * 119.99818 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46924 * 60.00629 * 9 7 2 30 30 H 1.08996 * 109.47203 * 300.00645 * 9 7 2 31 31 H 0.96702 * 113.99873 * 0.02562 * 12 11 10 32 32 H 0.97004 * 120.00639 * 359.17170 * 13 11 10 33 33 H 1.07990 * 119.96522 * 0.02562 * 15 14 13 34 34 H 1.07998 * 120.03999 * 180.02562 * 16 15 14 35 35 H 1.09004 * 109.64326 * 110.80737 * 21 20 18 36 36 H 1.09000 * 109.72840 * 350.24900 * 21 20 18 37 37 H 1.08999 * 109.51263 * 187.82516 * 22 21 20 38 38 H 1.09000 * 109.50968 * 67.72463 * 22 21 20 39 39 H 1.08998 * 109.51367 * 57.34547 * 24 23 22 40 40 H 1.09006 * 109.51382 * 177.44896 * 24 23 22 41 41 H 1.09005 * 109.68112 * 9.72397 * 25 20 18 42 42 H 1.08999 * 109.71357 * 249.19490 * 25 20 18 43 43 H 1.07996 * 120.03381 * 179.74281 * 26 17 16 44 44 H 1.08004 * 119.96141 * 180.27790 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.6681 -3.0287 -1.0187 12 8 4.9940 -4.3382 -1.0844 13 7 5.0429 -2.1750 -2.0302 14 6 5.7735 -2.6574 -3.1141 15 6 5.5171 -3.9311 -3.6125 16 6 6.2368 -4.4104 -4.6835 17 6 7.2256 -3.6160 -5.2708 18 6 7.9993 -4.1269 -6.4188 19 8 7.4721 -4.8677 -7.2260 20 7 9.2905 -3.7723 -6.5726 21 6 10.1037 -4.3307 -7.6647 22 6 11.4100 -4.8677 -7.0688 23 8 12.0226 -3.8464 -6.2780 24 6 11.2426 -3.4287 -5.1551 25 6 9.9283 -2.8168 -5.6530 26 6 7.4839 -2.3390 -4.7647 27 6 6.7570 -1.8637 -3.6969 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8752 -0.6803 -0.8887 31 1 4.6876 -4.8582 -0.3288 32 1 4.7985 -1.2372 -1.9890 33 1 4.7522 -4.5439 -3.1591 34 1 6.0371 -5.3988 -5.0702 35 1 10.3257 -3.5499 -8.3923 36 1 9.5608 -5.1418 -8.1500 37 1 12.0847 -5.1588 -7.8738 38 1 11.1954 -5.7336 -6.4425 39 1 11.0267 -4.2891 -4.5216 40 1 11.7974 -2.6852 -4.5827 41 1 9.2685 -2.6255 -4.8067 42 1 10.1332 -1.8832 -6.1769 43 1 8.2501 -1.7244 -5.2137 44 1 6.9530 -0.8753 -3.3082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331164944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:58 Heat of formation + Delta-G solvation = -24.145086 kcal Electronic energy + Delta-G solvation = -28015.808453 eV Core-core repulsion = 23935.619188 eV Total energy + Delta-G solvation = -4080.189265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03609 -39.85493 -38.73721 -37.89125 -35.63655 -35.19400 -33.85438 -32.39346 -31.97880 -31.04988 -29.63570 -28.20236 -27.55019 -24.78709 -23.98069 -23.21237 -22.55072 -21.92059 -20.51587 -19.98252 -18.13436 -17.84315 -17.13385 -16.88604 -16.74997 -16.37802 -16.09962 -15.95083 -15.58475 -15.38841 -14.92914 -14.85293 -14.31011 -14.27801 -14.06534 -13.71959 -13.56007 -13.44515 -12.86064 -12.73159 -12.61081 -12.45176 -12.21246 -11.99757 -11.84048 -11.47826 -11.15992 -11.09797 -10.74306 -10.67325 -10.56627 -10.35218 -10.01404 -9.66525 -9.09771 -8.99187 -8.93316 -8.73492 -8.57463 -7.44783 -6.17627 -4.16892 0.78904 1.24888 2.45888 2.56994 2.90661 3.14865 3.16863 3.24932 3.25903 3.35051 3.70942 4.17096 4.26868 4.28447 4.37169 4.49633 4.57837 4.67847 4.74928 4.79304 4.81991 5.02829 5.11617 5.13932 5.19760 5.25601 5.27969 5.36619 5.43840 5.46113 5.72638 5.83093 5.95193 6.03359 6.21624 6.26017 6.42575 6.60875 6.67112 6.91685 6.97691 7.04613 7.19793 7.54874 7.86459 7.88974 8.36465 8.82853 8.93596 9.42143 10.95388 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.002360 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.702150 B =11861.556521 C =12154.410521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.175 3.825 10 N -0.597 5.597 11 C 0.529 3.471 12 O -0.479 6.479 13 N -0.677 5.677 14 C 0.208 3.792 15 C -0.143 4.143 16 C -0.033 4.033 17 C -0.174 4.174 18 C 0.570 3.430 19 O -0.538 6.538 20 N -0.614 5.614 21 C 0.078 3.922 22 C 0.048 3.952 23 O -0.381 6.381 24 C 0.046 3.954 25 C 0.041 3.959 26 C -0.078 4.078 27 C -0.169 4.169 28 H 0.266 0.734 29 H 0.038 0.962 30 H -0.018 1.018 31 H 0.418 0.582 32 H 0.430 0.570 33 H 0.144 0.856 34 H 0.132 0.868 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.142 0.858 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.202 -6.766 -12.473 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.048 3.952 10 N -0.339 5.339 11 C 0.215 3.785 12 O -0.277 6.277 13 N -0.322 5.322 14 C 0.107 3.893 15 C -0.164 4.164 16 C -0.053 4.053 17 C -0.178 4.178 18 C 0.361 3.639 19 O -0.415 6.415 20 N -0.349 5.349 21 C -0.045 4.045 22 C -0.030 4.030 23 O -0.299 6.299 24 C -0.032 4.032 25 C -0.081 4.081 26 C -0.097 4.097 27 C -0.191 4.191 28 H 0.076 0.924 29 H 0.055 0.945 30 H -0.001 1.001 31 H 0.275 0.725 32 H 0.275 0.725 33 H 0.162 0.838 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.099 0.901 43 H 0.160 0.840 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 23.871 -7.247 -12.605 27.951 hybrid contribution -0.088 1.582 -0.062 1.586 sum 23.784 -5.665 -12.667 27.535 Atomic orbital electron populations 1.69880 1.06146 1.27076 1.50158 1.24932 0.94817 0.98890 0.94649 0.86873 0.80480 0.83939 0.78594 1.20112 1.20781 1.19029 1.20987 0.88185 0.94923 1.51070 0.90328 1.19849 0.96938 0.83675 0.94771 1.72520 1.19175 1.21408 1.20779 1.19914 0.90997 0.83263 0.84328 1.84635 1.77816 1.15534 1.49719 1.42847 1.57283 1.12311 1.19778 1.18108 0.90131 0.93752 0.87290 1.21167 1.01880 0.96364 0.96992 1.20973 0.91838 0.99155 0.93307 1.19587 1.01867 0.96830 0.99549 1.18362 0.80734 0.79826 0.84994 1.90777 1.69198 1.37255 1.44298 1.47976 1.10667 1.45594 1.30635 1.22290 0.92048 1.00475 0.89681 1.22995 0.94152 0.90275 0.95528 1.87965 1.44515 1.56790 1.40660 1.23044 0.91776 0.99934 0.88424 1.23399 0.96159 0.92614 0.95936 1.21384 0.98067 0.94837 0.95408 1.20858 0.96804 1.01426 0.99966 0.92410 0.94462 1.00101 0.72491 0.72492 0.83824 0.85000 0.90614 0.87959 0.87551 0.92520 0.92350 0.87433 0.85600 0.90135 0.84050 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.51 -14.53 9.94 -34.44 -0.34 -14.87 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.18 4.14 5.14 -5.19 -0.03 4.12 16 10 N -0.60 -12.55 10.47 -63.64 -0.67 -13.22 16 11 C 0.53 9.13 8.49 -88.37 -0.75 8.38 16 12 O -0.48 -6.55 10.45 -17.01 -0.18 -6.72 16 13 N -0.68 -10.61 5.28 -11.79 -0.06 -10.67 16 14 C 0.21 2.81 6.28 -83.76 -0.53 2.28 16 15 C -0.14 -1.89 8.58 -39.46 -0.34 -2.23 16 16 C -0.03 -0.41 9.59 -39.22 -0.38 -0.79 16 17 C -0.17 -2.03 5.54 -104.95 -0.58 -2.61 16 18 C 0.57 6.99 7.44 -12.46 -0.09 6.89 16 19 O -0.54 -8.32 16.27 5.29 0.09 -8.24 16 20 N -0.61 -5.76 3.02 -173.48 -0.52 -6.28 16 21 C 0.08 0.62 6.63 -3.53 -0.02 0.59 16 22 C 0.05 0.32 6.98 37.31 0.26 0.58 16 23 O -0.38 -3.10 10.74 -35.23 -0.38 -3.47 16 24 C 0.05 0.29 6.98 37.31 0.26 0.55 16 25 C 0.04 0.28 5.07 -3.54 -0.02 0.26 16 26 C -0.08 -0.76 7.43 -39.23 -0.29 -1.05 16 27 C -0.17 -1.85 9.95 -39.46 -0.39 -2.24 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.04 0.90 7.20 -51.93 -0.37 0.53 16 30 H -0.02 -0.40 4.78 -51.93 -0.25 -0.65 16 31 H 0.42 4.34 8.97 45.56 0.41 4.75 16 32 H 0.43 6.86 6.16 -40.82 -0.25 6.61 16 33 H 0.14 1.96 6.32 -52.49 -0.33 1.63 16 34 H 0.13 1.55 7.97 -52.49 -0.42 1.13 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.89 7.11 -51.93 -0.37 0.53 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.13 0.82 3.71 -52.05 -0.19 0.62 16 42 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 43 H 0.14 1.00 5.28 -52.49 -0.28 0.72 16 44 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -35.25 358.70 -8.15 -43.40 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.60 Total: 8.48 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -3.34 Total: 1.75 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.48 Total: -56.41 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.47 Total: -18.43 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.25 -8.15 -43.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331164944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.254 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds