Wall clock time and date at job start Tue Mar 31 2020 17:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46731 * 269.99653 * 3 2 1 5 5 H 1.48498 * 109.47318 * 29.99636 * 3 2 1 6 6 H 1.48501 * 109.47431 * 149.99871 * 3 2 1 7 7 C 1.37872 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00393 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00013 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47104 * 180.02562 * 9 7 2 11 11 C 1.30072 * 120.00162 * 115.12841 * 10 9 7 12 12 O 1.35103 * 119.99836 * 187.11203 * 11 10 9 13 13 N 1.37568 * 119.99872 * 7.10912 * 11 10 9 14 14 C 1.39335 * 120.00129 * 179.17208 * 13 11 10 15 15 C 1.39163 * 119.92483 * 36.37551 * 14 13 11 16 16 C 1.37641 * 120.07006 * 179.97438 * 15 14 13 17 17 C 1.39776 * 119.92750 * 359.97438 * 16 15 14 18 18 C 1.47564 * 120.06873 * 179.97438 * 17 16 15 19 19 O 1.21591 * 120.00350 * 33.55337 * 18 17 16 20 20 N 1.34779 * 120.00041 * 213.54237 * 18 17 16 21 21 C 1.47166 * 120.94361 * 176.41688 * 20 18 17 22 22 C 1.53294 * 108.37607 * 230.50064 * 21 20 18 23 23 O 1.42961 * 109.26705 * 307.77728 * 22 21 20 24 24 C 1.42959 * 114.16595 * 62.55178 * 23 22 21 25 25 C 1.47150 * 120.98140 * 356.46842 * 20 18 17 26 26 C 1.39772 * 119.85702 * 0.25528 * 17 16 15 27 27 C 1.37639 * 119.92138 * 359.48976 * 26 17 16 28 28 H 0.96998 * 119.99818 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46924 * 60.00629 * 9 7 2 30 30 H 1.08996 * 109.47203 * 300.00645 * 9 7 2 31 31 H 0.96702 * 113.99873 * 0.02562 * 12 11 10 32 32 H 0.97004 * 120.00639 * 359.17170 * 13 11 10 33 33 H 1.07990 * 119.96522 * 0.02562 * 15 14 13 34 34 H 1.07998 * 120.03999 * 180.02562 * 16 15 14 35 35 H 1.09004 * 109.64326 * 110.80737 * 21 20 18 36 36 H 1.09000 * 109.72840 * 350.24900 * 21 20 18 37 37 H 1.08999 * 109.51263 * 187.82516 * 22 21 20 38 38 H 1.09000 * 109.50968 * 67.72463 * 22 21 20 39 39 H 1.08998 * 109.51367 * 57.34547 * 24 23 22 40 40 H 1.09006 * 109.51382 * 177.44896 * 24 23 22 41 41 H 1.09005 * 109.68112 * 9.72397 * 25 20 18 42 42 H 1.08999 * 109.71357 * 249.19490 * 25 20 18 43 43 H 1.07996 * 120.03381 * 179.74281 * 26 17 16 44 44 H 1.08004 * 119.96141 * 180.27790 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.6681 -3.0287 -1.0187 12 8 4.9940 -4.3382 -1.0844 13 7 5.0429 -2.1750 -2.0302 14 6 5.7735 -2.6574 -3.1141 15 6 5.5171 -3.9311 -3.6125 16 6 6.2368 -4.4104 -4.6835 17 6 7.2256 -3.6160 -5.2708 18 6 7.9993 -4.1269 -6.4188 19 8 7.4721 -4.8677 -7.2260 20 7 9.2905 -3.7723 -6.5726 21 6 10.1037 -4.3307 -7.6647 22 6 11.4100 -4.8677 -7.0688 23 8 12.0226 -3.8464 -6.2780 24 6 11.2426 -3.4287 -5.1551 25 6 9.9283 -2.8168 -5.6530 26 6 7.4839 -2.3390 -4.7647 27 6 6.7570 -1.8637 -3.6969 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8752 -0.6803 -0.8887 31 1 4.6876 -4.8582 -0.3288 32 1 4.7985 -1.2372 -1.9890 33 1 4.7522 -4.5439 -3.1591 34 1 6.0371 -5.3988 -5.0702 35 1 10.3257 -3.5499 -8.3923 36 1 9.5608 -5.1418 -8.1500 37 1 12.0847 -5.1588 -7.8738 38 1 11.1954 -5.7336 -6.4425 39 1 11.0267 -4.2891 -4.5216 40 1 11.7974 -2.6852 -4.5827 41 1 9.2685 -2.6255 -4.8067 42 1 10.1332 -1.8832 -6.1769 43 1 8.2501 -1.7244 -5.2137 44 1 6.9530 -0.8753 -3.3082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331164944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:55 Heat of formation + Delta-G solvation = -54.327896 kcal Electronic energy + Delta-G solvation = -28017.117277 eV Core-core repulsion = 23935.619188 eV Total energy + Delta-G solvation = -4081.498090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.88629 -40.93151 -39.58031 -38.90704 -36.90880 -36.03783 -35.35724 -34.12493 -32.78963 -31.91052 -30.73462 -29.56651 -28.66970 -25.41855 -25.10662 -24.47059 -23.76601 -22.73991 -21.88663 -20.75466 -19.35504 -18.88877 -18.68885 -18.23202 -17.67394 -17.39827 -17.01187 -16.69769 -16.43533 -16.23529 -16.11346 -15.78071 -15.72063 -15.27675 -15.09556 -14.87191 -14.53533 -14.49041 -14.35349 -14.06675 -13.81209 -13.43641 -13.20962 -12.93367 -12.71873 -12.54539 -12.50547 -12.33379 -12.12409 -11.82896 -11.74428 -11.57783 -11.27747 -10.93124 -10.86425 -10.33029 -10.06004 -9.95535 -9.66537 -8.76611 -8.32676 -6.39304 -0.18735 0.33949 1.33448 1.38302 1.48928 1.51016 1.65932 1.77886 1.87775 2.32349 2.72078 2.87643 2.99915 3.14308 3.39015 3.70130 3.81910 3.88384 3.98532 4.09441 4.10716 4.21351 4.23636 4.28523 4.39778 4.48793 4.54356 4.63896 4.73489 4.77398 4.83181 4.90453 4.93280 5.05615 5.12778 5.21159 5.24111 5.38275 5.48543 5.67553 5.89919 5.99573 6.09369 6.18222 6.21007 6.61808 6.68579 6.97389 7.22426 7.44991 8.84340 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.002360 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.702150 B =11861.556521 C =12154.410521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.243 1.243 7 C -0.527 4.527 8 H 0.023 0.977 9 C 0.187 3.813 10 N -0.645 5.645 11 C 0.552 3.448 12 O -0.466 6.466 13 N -0.677 5.677 14 C 0.183 3.817 15 C -0.150 4.150 16 C -0.042 4.042 17 C -0.174 4.174 18 C 0.565 3.435 19 O -0.580 6.580 20 N -0.609 5.609 21 C 0.074 3.926 22 C 0.052 3.948 23 O -0.394 6.394 24 C 0.043 3.957 25 C 0.038 3.962 26 C -0.064 4.064 27 C -0.156 4.156 28 H 0.269 0.731 29 H 0.033 0.967 30 H 0.005 0.995 31 H 0.432 0.568 32 H 0.429 0.571 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.177 0.823 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.979 -4.711 -13.523 31.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.193 4.193 3 Si 0.776 3.224 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.566 4.566 8 H 0.041 0.959 9 C 0.058 3.942 10 N -0.391 5.391 11 C 0.238 3.762 12 O -0.265 6.265 13 N -0.322 5.322 14 C 0.085 3.915 15 C -0.171 4.171 16 C -0.062 4.062 17 C -0.179 4.179 18 C 0.356 3.644 19 O -0.461 6.461 20 N -0.342 5.342 21 C -0.048 4.048 22 C -0.026 4.026 23 O -0.312 6.312 24 C -0.034 4.034 25 C -0.083 4.083 26 C -0.082 4.082 27 C -0.177 4.177 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.292 0.708 32 H 0.273 0.727 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.146 0.854 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.119 0.881 43 H 0.194 0.806 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 27.731 -5.233 -13.685 31.363 hybrid contribution -1.158 0.735 0.126 1.377 sum 26.573 -4.498 -13.559 30.169 Atomic orbital electron populations 1.70065 1.08474 1.28467 1.51791 1.26020 0.95754 1.03691 0.93810 0.85614 0.79512 0.77472 0.79795 1.18022 1.20780 1.16617 1.21259 0.91140 0.93030 1.51135 0.95876 1.19510 0.93535 0.85785 0.95367 1.72454 1.23060 1.20248 1.23310 1.20023 0.88517 0.84079 0.83535 1.84679 1.77241 1.14111 1.50435 1.42787 1.57485 1.11946 1.19999 1.18310 0.91363 0.94380 0.87476 1.21089 1.02019 0.96563 0.97471 1.20978 0.92355 0.99477 0.93345 1.19721 1.01387 0.97560 0.99207 1.18477 0.81645 0.79540 0.84705 1.90758 1.70347 1.39250 1.45770 1.48096 1.09862 1.45273 1.30992 1.22417 0.92195 1.00545 0.89647 1.23043 0.93818 0.89747 0.95943 1.87957 1.45122 1.57010 1.41129 1.23187 0.91713 1.00395 0.88086 1.23614 0.96173 0.92766 0.95773 1.21712 0.97974 0.94022 0.94483 1.21139 0.95281 1.01956 0.99335 0.92213 0.94959 0.97779 0.70830 0.72685 0.84949 0.85291 0.89412 0.89241 0.85432 0.93028 0.92909 0.85050 0.85112 0.88054 0.80581 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 2 C 0.00 0.27 5.47 84.65 0.46 0.74 16 3 Si 0.95 41.80 27.47 68.60 1.88 43.68 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 7 C -0.53 -30.90 9.94 25.60 0.25 -30.64 16 8 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 9 C 0.19 8.78 5.14 85.63 0.44 9.22 16 10 N -0.65 -27.31 10.47 -469.54 -4.92 -32.22 16 11 C 0.55 18.71 8.49 179.56 1.53 20.24 16 12 O -0.47 -12.42 10.45 -83.79 -0.88 -13.30 16 13 N -0.68 -20.16 5.28 -301.54 -1.59 -21.75 16 14 C 0.18 4.59 6.28 38.39 0.24 4.83 16 15 C -0.15 -3.88 8.58 22.35 0.19 -3.68 16 16 C -0.04 -1.01 9.59 22.50 0.22 -0.80 16 17 C -0.17 -3.74 5.54 -20.07 -0.11 -3.85 16 18 C 0.57 13.11 7.44 86.70 0.65 13.76 16 19 O -0.58 -17.96 16.27 -4.00 -0.07 -18.02 16 20 N -0.61 -10.04 3.02 -821.03 -2.48 -12.52 16 21 C 0.07 1.05 6.63 86.35 0.57 1.62 16 22 C 0.05 0.58 6.98 72.08 0.50 1.09 16 23 O -0.39 -5.24 10.74 -148.98 -1.60 -6.84 16 24 C 0.04 0.41 6.98 72.08 0.50 0.92 16 25 C 0.04 0.37 5.07 86.35 0.44 0.81 16 26 C -0.06 -1.01 7.43 22.50 0.17 -0.84 16 27 C -0.16 -2.84 9.95 22.35 0.22 -2.62 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.03 1.53 7.20 -2.39 -0.02 1.52 16 30 H 0.00 0.20 4.78 -2.39 -0.01 0.19 16 31 H 0.43 8.78 8.97 -74.06 -0.66 8.12 16 32 H 0.43 12.78 6.16 -92.70 -0.57 12.20 16 33 H 0.13 3.64 6.32 -2.92 -0.02 3.63 16 34 H 0.13 3.11 7.97 -2.91 -0.02 3.09 16 35 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.09 1.52 7.11 -2.39 -0.02 1.50 16 37 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.13 1.13 3.71 -2.50 -0.01 1.12 16 42 H 0.10 0.66 8.11 -2.39 -0.02 0.65 16 43 H 0.18 1.58 5.28 -2.91 -0.02 1.56 16 44 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -80.51 358.70 -3.29 -83.80 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.22 Total: 25.32 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 6.27 Total: 10.79 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -8.69 Total: -125.42 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -2.54 Total: -38.17 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.88 Total: 43.68 kcal Total: -80.51 -3.29 -83.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331164944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.474 kcal (2) G-P(sol) polarization free energy of solvation -80.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds