Wall clock time and date at job start Tue Mar 31 2020 17:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48503 * 109.46967 * 269.99802 * 3 2 1 5 5 H 1.48497 * 109.47185 * 30.00139 * 3 2 1 6 6 H 1.48503 * 109.46972 * 150.00247 * 3 2 1 7 7 C 1.37877 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99773 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99912 * 179.97438 * 7 2 1 10 10 C 1.53039 * 109.45862 * 179.97438 * 9 7 2 11 11 C 1.53192 * 109.31095 * 181.37332 * 10 9 7 12 12 N 1.46934 * 108.77700 * 305.36472 * 11 10 9 13 13 C 1.34772 * 120.63190 * 233.59266 * 12 11 10 14 14 O 1.21590 * 120.00112 * 5.21270 * 13 12 11 15 15 N 1.34778 * 120.00126 * 185.22470 * 13 12 11 16 16 C 1.46500 * 120.00176 * 175.01267 * 15 13 12 17 17 C 1.50700 * 109.47111 * 179.97438 * 16 15 13 18 18 C 1.38253 * 119.99828 * 259.95054 * 17 16 15 19 19 C 1.38210 * 120.00020 * 180.02562 * 18 17 16 20 20 C 1.38256 * 120.00256 * 0.02856 * 19 18 17 21 21 C 1.38217 * 119.99835 * 359.97126 * 20 19 18 22 22 C 1.38215 * 120.00009 * 79.99641 * 17 16 15 23 23 N 1.48018 * 120.00183 * 0.25469 * 22 17 16 24 24 O 1.21801 * 120.00150 * 179.72871 * 23 22 17 25 25 O 1.21799 * 119.99655 * 359.72552 * 23 22 17 26 26 C 1.46919 * 118.73642 * 53.85752 * 12 11 10 27 27 C 1.53041 * 109.45061 * 300.06232 * 9 7 2 28 28 H 0.97006 * 120.00156 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46061 * 60.02715 * 9 7 2 30 30 H 1.09002 * 109.49638 * 61.42050 * 10 9 7 31 31 H 1.08998 * 109.52527 * 301.33897 * 10 9 7 32 32 H 1.08999 * 109.58910 * 185.58019 * 11 10 9 33 33 H 1.08999 * 109.70942 * 65.22126 * 11 10 9 34 34 H 0.96997 * 119.99588 * 355.00275 * 15 13 12 35 35 H 1.08999 * 109.47573 * 59.99240 * 16 15 13 36 36 H 1.09002 * 109.46854 * 299.99312 * 16 15 13 37 37 H 1.08003 * 120.00327 * 0.08787 * 18 17 16 38 38 H 1.07999 * 120.00167 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.00167 * 179.97438 * 20 19 18 40 40 H 1.07994 * 120.00206 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.58716 * 65.93046 * 26 12 11 42 42 H 1.08996 * 109.59063 * 186.35263 * 26 12 11 43 43 H 1.09002 * 109.49490 * 298.57364 * 27 9 7 44 44 H 1.08996 * 109.49644 * 58.66604 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0213 -2.6371 -0.0010 11 6 5.5528 -2.6332 0.0331 12 7 6.0487 -1.8181 -1.0844 13 6 6.9423 -2.3221 -1.9584 14 8 7.2742 -3.4894 -1.8834 15 7 7.4683 -1.5321 -2.9153 16 6 8.5193 -2.0484 -3.7957 17 6 8.9309 -0.9749 -4.7699 18 6 8.4383 -0.9878 -6.0616 19 6 8.8162 -0.0036 -6.9552 20 6 9.6873 0.9937 -6.5577 21 6 10.1798 1.0067 -5.2663 22 6 9.8016 0.0222 -4.3723 23 7 10.3343 0.0323 -2.9913 24 8 11.1055 0.9081 -2.6424 25 8 10.0013 -0.8352 -2.2038 26 6 5.5564 -0.4413 -1.2273 27 6 4.0206 -0.4709 -1.2501 28 1 -0.4851 0.8401 -0.0004 29 1 3.8750 -0.6808 0.8891 30 1 3.6787 -3.1440 -0.9031 31 1 3.6392 -3.1583 0.8767 32 1 5.9231 -3.6536 -0.0665 33 1 5.8985 -2.2095 0.9760 34 1 7.1508 -0.6217 -3.0212 35 1 8.1422 -2.9114 -4.3444 36 1 9.3804 -2.3462 -3.1975 37 1 7.7573 -1.7665 -6.3721 38 1 8.4310 -0.0135 -7.9642 39 1 9.9829 1.7625 -7.2561 40 1 10.8599 1.7859 -4.9556 41 1 5.9001 0.1590 -0.3850 42 1 5.9289 -0.0148 -2.1587 43 1 3.6780 -0.9979 -2.1406 44 1 3.6380 0.5496 -1.2610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541915748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:48 Heat of formation + Delta-G solvation = 13.839446 kcal Electronic energy + Delta-G solvation = -29106.465709 eV Core-core repulsion = 25027.923577 eV Total energy + Delta-G solvation = -4078.542132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.49920 -40.30875 -39.74005 -37.30558 -36.79718 -35.04287 -33.54898 -32.47592 -32.18476 -31.25251 -30.40579 -27.58243 -26.53231 -25.65124 -23.18404 -22.85483 -22.69048 -22.23161 -20.31992 -19.48952 -19.13066 -18.76477 -17.91118 -17.72883 -16.79039 -16.59704 -16.26266 -16.09587 -15.30268 -15.19627 -14.77104 -14.40900 -14.06554 -13.78720 -13.58878 -13.43377 -13.30421 -13.00679 -12.75341 -12.57287 -12.47252 -12.09640 -11.98511 -11.80026 -11.62499 -11.30047 -11.06455 -10.99781 -10.70969 -10.29234 -10.18030 -10.14690 -9.93854 -9.74592 -9.65242 -9.29430 -9.09836 -9.01694 -8.58210 -8.04436 -6.10594 -4.09481 -0.55628 0.31419 0.99882 1.11313 2.60745 3.02310 3.18738 3.31522 3.34177 3.47948 3.75516 3.83578 4.07851 4.12919 4.32911 4.35708 4.38112 4.62013 4.96855 5.06656 5.13784 5.25271 5.30599 5.43559 5.48911 5.58537 5.61164 5.65389 5.75822 5.85376 5.87184 6.02623 6.20264 6.23519 6.33911 6.44611 6.61300 6.66650 6.73272 6.88522 7.17794 7.24933 7.42074 7.50030 7.72715 8.14510 8.49840 8.82934 8.94481 9.51581 11.02862 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.003283 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.477890 B = 8526.841892 C = 9113.498259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.885 3.115 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.113 4.113 11 C 0.127 3.873 12 N -0.617 5.617 13 C 0.717 3.283 14 O -0.595 6.595 15 N -0.741 5.741 16 C 0.164 3.836 17 C -0.040 4.040 18 C -0.100 4.100 19 C -0.068 4.068 20 C -0.114 4.114 21 C -0.057 4.057 22 C -0.033 4.033 23 N 0.024 4.976 24 O -0.168 6.168 25 O -0.135 6.135 26 C 0.110 3.890 27 C -0.133 4.133 28 H 0.263 0.737 29 H 0.029 0.971 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.392 0.608 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.928 2.735 -15.761 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.004 4.004 10 C -0.152 4.152 11 C 0.005 3.995 12 N -0.354 5.354 13 C 0.418 3.582 14 O -0.473 6.473 15 N -0.399 5.399 16 C 0.040 3.960 17 C -0.041 4.041 18 C -0.119 4.119 19 C -0.086 4.086 20 C -0.133 4.133 21 C -0.076 4.076 22 C -0.116 4.116 23 N 0.543 4.457 24 O -0.381 6.381 25 O -0.353 6.353 26 C -0.013 4.013 27 C -0.171 4.171 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.172 0.828 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.778 1.986 -16.323 26.497 hybrid contribution 0.278 1.722 0.082 1.746 sum 21.055 3.708 -16.241 26.849 Atomic orbital electron populations 1.69901 1.06286 1.26883 1.50877 1.25046 0.94688 0.99005 0.94607 0.86874 0.80106 0.83752 0.77664 1.20772 1.22447 1.18926 1.21070 0.88784 0.94479 1.50595 0.90791 1.19118 0.96715 0.91893 0.92654 1.21837 0.92106 0.99301 1.01919 1.21659 0.95516 0.95517 0.86842 1.47258 1.44344 1.14582 1.29177 1.15615 0.79143 0.84396 0.79000 1.90870 1.65878 1.15285 1.75310 1.44988 1.41804 1.16571 1.36538 1.20328 0.93036 0.92625 0.89985 1.20009 0.93576 0.94273 0.96279 1.21314 0.99481 0.99875 0.91277 1.21692 0.94041 0.92458 1.00411 1.21298 0.97414 0.99570 0.94993 1.21122 0.97723 0.96301 0.92498 1.21092 1.04885 1.02032 0.83591 1.43630 0.99413 0.99822 1.02810 1.94537 1.30741 1.30613 1.82168 1.94613 1.62094 1.30106 1.48501 1.21832 0.96963 0.82434 1.00101 1.22450 0.91298 1.00944 1.02454 0.92687 0.95341 0.92316 0.91297 0.89626 0.92158 0.77212 0.90086 0.87809 0.83097 0.83648 0.83409 0.82790 0.91753 0.92393 0.91664 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 2 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 3 Si 0.89 21.19 24.38 -169.99 -4.14 17.05 16 4 H -0.28 -6.45 6.85 56.52 0.39 -6.07 16 5 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -5.99 6.53 56.52 0.37 -5.62 16 7 C -0.51 -13.99 9.14 -34.44 -0.31 -14.30 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.02 0.34 1.65 -91.73 -0.15 0.19 16 10 C -0.11 -2.24 5.30 -26.61 -0.14 -2.38 16 11 C 0.13 2.24 6.44 -3.71 -0.02 2.22 16 12 N -0.62 -10.78 2.97 -178.24 -0.53 -11.31 16 13 C 0.72 12.43 8.30 -86.92 -0.72 11.71 16 14 O -0.59 -11.98 15.77 5.29 0.08 -11.90 16 15 N -0.74 -10.11 4.72 -66.41 -0.31 -10.42 16 16 C 0.16 1.87 4.82 -5.19 -0.03 1.85 16 17 C -0.04 -0.35 5.25 -104.62 -0.55 -0.90 16 18 C -0.10 -0.60 9.67 -39.59 -0.38 -0.98 16 19 C -0.07 -0.28 10.05 -39.59 -0.40 -0.68 16 20 C -0.11 -0.49 10.05 -39.58 -0.40 -0.88 16 21 C -0.06 -0.39 9.56 -39.58 -0.38 -0.76 16 22 C -0.03 -0.31 6.85 -79.95 -0.55 -0.86 16 23 N 0.02 0.31 4.45 33.96 0.15 0.46 16 24 O -0.17 -2.23 18.45 -29.46 -0.54 -2.77 16 25 O -0.13 -1.97 14.76 -29.46 -0.43 -2.40 16 26 C 0.11 1.84 6.42 -3.49 -0.02 1.82 16 27 C -0.13 -2.71 4.86 -26.39 -0.13 -2.83 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.09 1.52 6.99 -51.93 -0.36 1.15 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.39 4.90 5.95 -40.82 -0.24 4.65 16 35 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 36 H 0.10 1.36 5.87 -51.93 -0.30 1.05 16 37 H 0.15 0.67 8.04 -52.48 -0.42 0.25 16 38 H 0.15 0.20 8.06 -52.49 -0.42 -0.22 16 39 H 0.15 0.22 8.06 -52.49 -0.42 -0.20 16 40 H 0.15 0.87 7.61 -52.49 -0.40 0.47 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.81 5.64 -51.93 -0.29 0.52 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.06 1.19 3.24 -51.93 -0.17 1.02 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -34.25 355.41 -9.42 -43.67 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.54 Total: 3.66 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -4.28 Total: -4.97 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.08 Total: -47.70 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.90 Total: -17.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.14 Total: 17.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.25 -9.42 -43.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541915748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.510 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds