Wall clock time and date at job start Tue Mar 31 2020 17:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48503 * 109.46967 * 269.99802 * 3 2 1 5 5 H 1.48497 * 109.47185 * 30.00139 * 3 2 1 6 6 H 1.48503 * 109.46972 * 150.00247 * 3 2 1 7 7 C 1.37877 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99773 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99912 * 179.97438 * 7 2 1 10 10 C 1.53039 * 109.45862 * 179.97438 * 9 7 2 11 11 C 1.53192 * 109.31095 * 181.37332 * 10 9 7 12 12 N 1.46934 * 108.77700 * 305.36472 * 11 10 9 13 13 C 1.34772 * 120.63190 * 233.59266 * 12 11 10 14 14 O 1.21590 * 120.00112 * 5.21270 * 13 12 11 15 15 N 1.34778 * 120.00126 * 185.22470 * 13 12 11 16 16 C 1.46500 * 120.00176 * 175.01267 * 15 13 12 17 17 C 1.50700 * 109.47111 * 179.97438 * 16 15 13 18 18 C 1.38253 * 119.99828 * 259.95054 * 17 16 15 19 19 C 1.38210 * 120.00020 * 180.02562 * 18 17 16 20 20 C 1.38256 * 120.00256 * 0.02856 * 19 18 17 21 21 C 1.38217 * 119.99835 * 359.97126 * 20 19 18 22 22 C 1.38215 * 120.00009 * 79.99641 * 17 16 15 23 23 N 1.48018 * 120.00183 * 0.25469 * 22 17 16 24 24 O 1.21801 * 120.00150 * 179.72871 * 23 22 17 25 25 O 1.21799 * 119.99655 * 359.72552 * 23 22 17 26 26 C 1.46919 * 118.73642 * 53.85752 * 12 11 10 27 27 C 1.53041 * 109.45061 * 300.06232 * 9 7 2 28 28 H 0.97006 * 120.00156 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46061 * 60.02715 * 9 7 2 30 30 H 1.09002 * 109.49638 * 61.42050 * 10 9 7 31 31 H 1.08998 * 109.52527 * 301.33897 * 10 9 7 32 32 H 1.08999 * 109.58910 * 185.58019 * 11 10 9 33 33 H 1.08999 * 109.70942 * 65.22126 * 11 10 9 34 34 H 0.96997 * 119.99588 * 355.00275 * 15 13 12 35 35 H 1.08999 * 109.47573 * 59.99240 * 16 15 13 36 36 H 1.09002 * 109.46854 * 299.99312 * 16 15 13 37 37 H 1.08003 * 120.00327 * 0.08787 * 18 17 16 38 38 H 1.07999 * 120.00167 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.00167 * 179.97438 * 20 19 18 40 40 H 1.07994 * 120.00206 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.58716 * 65.93046 * 26 12 11 42 42 H 1.08996 * 109.59063 * 186.35263 * 26 12 11 43 43 H 1.09002 * 109.49490 * 298.57364 * 27 9 7 44 44 H 1.08996 * 109.49644 * 58.66604 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0213 -2.6371 -0.0010 11 6 5.5528 -2.6332 0.0331 12 7 6.0487 -1.8181 -1.0844 13 6 6.9423 -2.3221 -1.9584 14 8 7.2742 -3.4894 -1.8834 15 7 7.4683 -1.5321 -2.9153 16 6 8.5193 -2.0484 -3.7957 17 6 8.9309 -0.9749 -4.7699 18 6 8.4383 -0.9878 -6.0616 19 6 8.8162 -0.0036 -6.9552 20 6 9.6873 0.9937 -6.5577 21 6 10.1798 1.0067 -5.2663 22 6 9.8016 0.0222 -4.3723 23 7 10.3343 0.0323 -2.9913 24 8 11.1055 0.9081 -2.6424 25 8 10.0013 -0.8352 -2.2038 26 6 5.5564 -0.4413 -1.2273 27 6 4.0206 -0.4709 -1.2501 28 1 -0.4851 0.8401 -0.0004 29 1 3.8750 -0.6808 0.8891 30 1 3.6787 -3.1440 -0.9031 31 1 3.6392 -3.1583 0.8767 32 1 5.9231 -3.6536 -0.0665 33 1 5.8985 -2.2095 0.9760 34 1 7.1508 -0.6217 -3.0212 35 1 8.1422 -2.9114 -4.3444 36 1 9.3804 -2.3462 -3.1975 37 1 7.7573 -1.7665 -6.3721 38 1 8.4310 -0.0135 -7.9642 39 1 9.9829 1.7625 -7.2561 40 1 10.8599 1.7859 -4.9556 41 1 5.9001 0.1590 -0.3850 42 1 5.9289 -0.0148 -2.1587 43 1 3.6780 -0.9979 -2.1406 44 1 3.6380 0.5496 -1.2610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541915748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:40 Heat of formation + Delta-G solvation = -8.047332 kcal Electronic energy + Delta-G solvation = -29107.414791 eV Core-core repulsion = 25027.923577 eV Total energy + Delta-G solvation = -4079.491214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 6.66 seconds Orbital eigenvalues (eV) -43.32397 -41.48995 -40.48015 -38.74787 -37.77123 -36.09630 -35.32678 -33.59646 -32.99129 -32.62760 -31.80373 -28.66716 -27.86425 -26.64929 -24.44778 -24.25057 -23.72050 -22.97263 -21.82990 -20.63572 -20.11769 -19.63740 -19.22228 -18.77942 -18.58483 -17.46194 -17.14884 -16.97188 -16.64147 -16.25605 -15.80141 -15.58891 -15.35708 -15.15601 -14.81492 -14.65280 -14.40926 -14.16708 -14.02536 -13.86202 -13.71818 -13.39325 -13.21795 -12.83020 -12.57840 -12.49069 -12.30266 -12.29009 -12.11622 -11.93284 -11.89395 -11.51168 -11.34178 -11.05914 -11.01830 -10.65831 -10.61828 -10.35347 -10.19316 -9.44597 -8.28153 -6.32673 -1.29696 -0.14068 0.28166 0.39189 1.29248 1.38413 1.48172 1.65245 2.13168 2.30811 2.33843 2.89177 3.06425 3.13170 3.30301 3.69223 3.91389 3.94694 3.99851 4.03126 4.13771 4.15643 4.26452 4.38859 4.43207 4.49976 4.51073 4.67363 4.70668 4.81408 4.85831 4.96397 5.02866 5.03378 5.08519 5.11922 5.22127 5.35081 5.36884 5.53439 5.55671 5.67258 5.73039 5.92749 6.32504 6.44780 6.74339 6.87419 7.32572 7.50539 8.88993 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.003283 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.477890 B = 8526.841892 C = 9113.498259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.260 1.260 5 H -0.302 1.302 6 H -0.240 1.240 7 C -0.519 4.519 8 H 0.028 0.972 9 C 0.015 3.985 10 C -0.105 4.105 11 C 0.135 3.865 12 N -0.623 5.623 13 C 0.713 3.287 14 O -0.628 6.628 15 N -0.727 5.727 16 C 0.166 3.834 17 C -0.053 4.053 18 C -0.099 4.099 19 C -0.050 4.050 20 C -0.099 4.099 21 C -0.060 4.060 22 C -0.053 4.053 23 N 0.030 4.970 24 O -0.178 6.178 25 O -0.188 6.188 26 C 0.117 3.883 27 C -0.129 4.129 28 H 0.265 0.735 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.399 0.601 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.167 0.833 38 H 0.184 0.816 39 H 0.185 0.815 40 H 0.162 0.838 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.182 5.202 -18.827 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.186 1.186 5 H -0.231 1.231 6 H -0.163 1.163 7 C -0.557 4.557 8 H 0.047 0.953 9 C -0.004 4.004 10 C -0.144 4.144 11 C 0.012 3.988 12 N -0.359 5.359 13 C 0.415 3.585 14 O -0.509 6.509 15 N -0.384 5.384 16 C 0.042 3.958 17 C -0.054 4.054 18 C -0.118 4.118 19 C -0.067 4.067 20 C -0.118 4.118 21 C -0.080 4.080 22 C -0.137 4.137 23 N 0.541 4.459 24 O -0.392 6.392 25 O -0.397 6.397 26 C -0.006 4.006 27 C -0.167 4.167 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.236 0.764 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.185 0.815 38 H 0.202 0.798 39 H 0.203 0.797 40 H 0.180 0.820 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.047 4.409 -19.371 30.428 hybrid contribution -0.470 0.912 0.862 1.340 sum 22.578 5.322 -18.509 29.676 Atomic orbital electron populations 1.70071 1.08432 1.28024 1.52838 1.25964 0.95445 1.03277 0.94172 0.85829 0.79424 0.78204 0.78935 1.18590 1.23055 1.16314 1.21374 0.91556 0.92838 1.49919 0.95332 1.19078 0.93425 0.93901 0.94025 1.21708 0.93918 0.97569 1.01160 1.21524 0.93444 0.95948 0.87885 1.47284 1.44569 1.14864 1.29156 1.15775 0.79086 0.84275 0.79382 1.90843 1.66965 1.16880 1.76228 1.44905 1.41501 1.16380 1.35612 1.20309 0.91552 0.94015 0.89932 1.19840 0.94859 0.93842 0.96906 1.21593 0.99248 1.00831 0.90132 1.22180 0.92353 0.90718 1.01469 1.21785 0.95920 0.99988 0.94074 1.21435 0.97815 0.95620 0.93083 1.21285 1.06540 1.03946 0.81915 1.44102 0.98807 0.98979 1.03981 1.94492 1.31106 1.30592 1.83019 1.94613 1.63638 1.31119 1.50287 1.21816 0.94118 0.82268 1.02417 1.22277 0.94018 0.99934 1.00453 0.92632 0.95073 0.93903 0.91400 0.89820 0.90532 0.76391 0.89634 0.90024 0.81546 0.79847 0.79731 0.82009 0.90527 0.89238 0.92603 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 2 C 0.01 0.45 5.45 84.65 0.46 0.91 16 3 Si 0.95 42.97 24.38 68.60 1.67 44.64 16 4 H -0.26 -10.87 6.85 99.48 0.68 -10.19 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.24 -9.81 6.53 99.48 0.65 -9.16 16 7 C -0.52 -29.22 9.14 25.60 0.23 -28.99 16 8 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 9 C 0.01 0.65 1.65 -11.51 -0.02 0.63 16 10 C -0.11 -4.19 5.30 30.67 0.16 -4.03 16 11 C 0.13 4.67 6.44 86.36 0.56 5.23 16 12 N -0.62 -20.95 2.97 -836.08 -2.48 -23.43 16 13 C 0.71 24.30 8.30 179.06 1.49 25.78 16 14 O -0.63 -25.47 15.77 -4.00 -0.06 -25.54 16 15 N -0.73 -19.06 4.72 -482.29 -2.28 -21.34 16 16 C 0.17 3.70 4.82 85.63 0.41 4.11 16 17 C -0.05 -0.82 5.25 -19.87 -0.10 -0.93 16 18 C -0.10 -0.81 9.67 22.27 0.22 -0.59 16 19 C -0.05 -0.13 10.05 22.27 0.22 0.10 16 20 C -0.10 -0.32 10.05 22.27 0.22 -0.09 16 21 C -0.06 -0.62 9.56 22.27 0.21 -0.40 16 22 C -0.05 -0.92 6.85 36.38 0.25 -0.68 16 23 N 0.03 0.74 4.45 -46.46 -0.21 0.54 16 24 O -0.18 -4.67 18.45 18.88 0.35 -4.32 16 25 O -0.19 -5.68 14.76 18.89 0.28 -5.40 16 26 C 0.12 3.60 6.42 86.51 0.56 4.15 16 27 C -0.13 -4.99 4.86 30.82 0.15 -4.84 16 28 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 29 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.08 2.96 6.99 -2.39 -0.02 2.94 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.40 9.14 5.95 -92.71 -0.55 8.59 16 35 H 0.09 1.79 8.00 -2.39 -0.02 1.77 16 36 H 0.08 2.23 5.87 -2.39 -0.01 2.21 16 37 H 0.17 0.82 8.04 -2.91 -0.02 0.80 16 38 H 0.18 -0.81 8.06 -2.91 -0.02 -0.83 16 39 H 0.19 -0.69 8.06 -2.91 -0.02 -0.72 16 40 H 0.16 1.36 7.61 -2.91 -0.02 1.34 16 41 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.09 2.20 5.64 -2.39 -0.01 2.19 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.05 2.07 3.24 -2.39 -0.01 2.06 16 Total: -1.00 -79.63 355.41 3.01 -76.62 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.42 Total: 16.90 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.02 Total: 0.37 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -4.66 Total: -103.27 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: 0.56 Total: -35.26 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.67 Total: 44.64 kcal Total: -79.63 3.01 -76.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541915748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.572 kcal (2) G-P(sol) polarization free energy of solvation -79.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.66 seconds