Wall clock time and date at job start Tue Mar 31 2020 18:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00550 * 2 1 4 4 H 1.48499 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46871 * 300.00255 * 3 2 1 6 6 H 1.48498 * 109.47039 * 60.00050 * 3 2 1 7 7 C 1.38814 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00337 * 163.06904 * 7 2 1 9 9 N 1.36936 * 120.00133 * 343.06978 * 7 2 1 10 10 C 1.46930 * 120.62745 * 331.84883 * 9 7 2 11 11 C 1.53198 * 108.77596 * 233.58488 * 10 9 7 12 12 C 1.53036 * 109.31287 * 305.36859 * 11 10 9 13 13 N 1.46498 * 109.45933 * 181.38633 * 12 11 10 14 14 C 1.34775 * 119.99837 * 155.24736 * 13 12 11 15 15 O 1.21277 * 120.00720 * 359.72539 * 14 13 12 16 16 C 1.50704 * 119.99949 * 179.72095 * 14 13 12 17 17 C 1.50693 * 109.47338 * 179.97438 * 16 14 13 18 18 C 1.38251 * 120.00373 * 269.72758 * 17 16 14 19 19 C 1.38215 * 120.00060 * 179.78399 * 18 17 16 20 20 C 1.38252 * 119.99999 * 0.47205 * 19 18 17 21 21 C 1.38212 * 120.00260 * 359.76231 * 20 19 18 22 22 N 1.48018 * 120.00157 * 180.02562 * 21 20 19 23 23 O 1.21809 * 119.99514 * 180.02562 * 22 21 20 24 24 O 1.21796 * 120.00264 * 0.02562 * 22 21 20 25 25 C 1.38217 * 119.99789 * 90.00314 * 17 16 14 26 26 C 1.53042 * 109.53047 * 61.36896 * 12 11 10 27 27 C 1.46927 * 120.63455 * 151.82859 * 9 7 2 28 28 H 0.97006 * 119.99529 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58632 * 113.79842 * 10 9 7 30 30 H 1.08992 * 109.70274 * 353.44523 * 10 9 7 31 31 H 1.08994 * 109.49550 * 185.41183 * 11 10 9 32 32 H 1.09002 * 109.49532 * 65.31691 * 11 10 9 33 33 H 1.09005 * 109.46134 * 301.35443 * 12 11 10 34 34 H 0.97000 * 119.99866 * 334.96692 * 13 12 11 35 35 H 1.09002 * 109.47271 * 300.00617 * 16 14 13 36 36 H 1.09009 * 109.47044 * 59.99990 * 16 14 13 37 37 H 1.07999 * 119.99985 * 0.02562 * 18 17 16 38 38 H 1.08003 * 120.00472 * 180.25254 * 19 18 17 39 39 H 1.08007 * 120.00393 * 179.78520 * 20 19 18 40 40 H 1.07999 * 119.99932 * 359.97438 * 25 17 16 41 41 H 1.08997 * 109.49256 * 58.57841 * 26 12 11 42 42 H 1.08997 * 109.49712 * 178.67549 * 26 12 11 43 43 H 1.09004 * 109.58320 * 246.20365 * 27 9 7 44 44 H 1.09001 * 109.58333 * 6.47805 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2729 9 7 1.3700 -2.3625 0.3443 10 6 0.2260 -2.3408 1.2660 11 6 0.4973 -3.3209 2.4119 12 6 0.8118 -4.7021 1.8327 13 7 1.0393 -5.6496 2.9266 14 6 0.8406 -6.9678 2.7284 15 8 0.4687 -7.3692 1.6461 16 6 1.0807 -7.9433 3.8518 17 6 0.7877 -9.3420 3.3738 18 6 -0.4848 -9.8659 3.5073 19 6 -0.7546 -11.1472 3.0648 20 6 0.2504 -11.9086 2.4976 21 6 1.5237 -11.3867 2.3686 22 7 2.5994 -12.2017 1.7608 23 8 3.7217 -11.7419 1.6475 24 8 2.3625 -13.3321 1.3740 25 6 1.7925 -10.1034 2.8072 26 6 2.0673 -4.6178 0.9617 27 6 1.8136 -3.6528 -0.2007 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6772 -2.6410 0.7346 30 1 0.0967 -1.3359 1.6676 31 1 -0.3833 -3.3861 3.0509 32 1 1.3471 -2.9698 2.9973 33 1 -0.0284 -5.0417 1.2269 34 1 1.3368 -5.3287 3.7922 35 1 2.1204 -7.8789 4.1730 36 1 0.4262 -7.7013 4.6893 37 1 -1.2689 -9.2725 3.9538 38 1 -1.7496 -11.5550 3.1654 39 1 0.0404 -12.9111 2.1550 40 1 2.7875 -9.6957 2.7066 41 1 2.9020 -4.2544 1.5609 42 1 2.3043 -5.6064 0.5685 43 1 1.0399 -4.0599 -0.8518 44 1 2.7330 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610227624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:01 Heat of formation + Delta-G solvation = 1.653460 kcal Electronic energy + Delta-G solvation = -27828.843770 eV Core-core repulsion = 23749.773213 eV Total energy + Delta-G solvation = -4079.070556 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.39215 -40.45052 -39.32494 -37.41379 -36.76960 -34.53967 -33.67145 -32.26905 -32.15096 -30.29411 -29.65936 -28.15505 -26.84502 -25.03053 -23.17888 -22.67083 -22.30250 -21.75727 -20.42057 -19.50491 -19.06005 -18.80557 -17.73899 -17.32874 -16.98665 -16.67163 -16.19133 -15.95676 -15.00821 -14.93085 -14.68846 -14.14193 -13.91645 -13.79495 -13.61369 -13.22955 -13.09794 -12.87963 -12.67628 -12.45480 -12.27727 -11.95608 -11.75534 -11.53442 -11.37580 -11.34138 -11.18997 -10.94214 -10.78064 -10.55406 -10.34782 -10.12035 -10.07908 -9.93767 -9.82580 -9.67495 -9.43420 -8.84631 -8.51921 -6.74200 -5.84861 -3.27182 -0.42654 0.52254 1.08043 1.16185 2.55881 2.80158 3.29375 3.33917 3.41604 3.43772 3.85825 4.03988 4.28607 4.44210 4.45090 4.51302 4.59666 4.73635 4.93022 5.00969 5.18551 5.26685 5.34524 5.35750 5.42914 5.50838 5.53169 5.70871 5.78003 5.87644 5.99602 6.17166 6.19531 6.23890 6.44295 6.47399 6.50088 6.73201 6.80261 6.92583 7.24215 7.41805 7.48749 7.59161 7.75396 8.20497 8.39227 9.15491 9.78430 10.35252 11.24181 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.002148 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.396578 B =13029.516247 C =13659.976440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.151 3.849 13 N -0.722 5.722 14 C 0.509 3.491 15 O -0.535 6.535 16 C -0.107 4.107 17 C -0.058 4.058 18 C -0.053 4.053 19 C -0.115 4.115 20 C -0.058 4.058 21 C -0.043 4.043 22 N 0.030 4.970 23 O -0.159 6.159 24 O -0.163 6.163 25 C -0.041 4.041 26 C -0.139 4.139 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.020 0.980 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.397 0.603 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -20.260 13.348 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.186 4.186 12 C 0.047 3.953 13 N -0.372 5.372 14 C 0.294 3.706 15 O -0.412 6.412 16 C -0.147 4.147 17 C -0.060 4.060 18 C -0.071 4.071 19 C -0.134 4.134 20 C -0.077 4.077 21 C -0.125 4.125 22 N 0.549 4.451 23 O -0.376 6.376 24 O -0.379 6.379 25 C -0.060 4.060 26 C -0.179 4.179 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.231 0.769 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.497 -19.993 12.820 23.882 hybrid contribution 0.828 0.830 0.232 1.195 sum -1.669 -19.163 13.052 23.246 Atomic orbital electron populations 1.70033 1.05273 1.25463 1.54016 1.25061 0.95308 0.98481 1.00842 0.86221 0.79387 0.83869 0.77297 1.20233 1.21686 1.21552 1.19236 0.92632 0.84691 1.41599 0.91561 1.44101 1.35802 1.01689 1.49947 1.20741 0.88923 0.97923 0.87677 1.22537 1.00523 0.94678 1.00864 1.21078 0.98580 0.88218 0.87383 1.46350 1.68497 1.06321 1.15994 1.20306 0.77951 0.83171 0.89143 1.90752 1.45897 1.78264 1.26260 1.20764 1.05464 0.90004 0.98464 1.19284 0.92991 0.94962 0.98734 1.21518 0.96025 0.94943 0.94629 1.21178 0.99437 0.94131 0.98611 1.21067 0.89827 1.01457 0.95365 1.21053 0.88745 0.93927 1.08822 1.43624 1.02016 1.00969 0.98504 1.94560 1.07806 1.75203 1.60001 1.94525 1.88386 1.03948 1.51003 1.20886 1.01538 0.90540 0.93023 1.22372 0.97089 0.99561 0.98910 1.20873 0.97969 0.86533 0.92609 0.93626 0.96143 0.88979 0.92752 0.92114 0.90036 0.76949 0.87223 0.87089 0.84000 0.83405 0.83008 0.83062 0.92255 0.92785 0.96227 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.48 2.99 -172.31 -0.52 -14.99 16 10 C 0.17 3.94 5.30 -3.71 -0.02 3.93 16 11 C -0.15 -2.49 5.55 -26.61 -0.15 -2.64 16 12 C 0.15 2.42 2.41 -67.89 -0.16 2.26 16 13 N -0.72 -8.51 5.08 -53.77 -0.27 -8.78 16 14 C 0.51 6.03 7.78 -10.98 -0.09 5.95 16 15 O -0.54 -8.81 15.70 5.56 0.09 -8.73 16 16 C -0.11 -0.74 5.83 -29.04 -0.17 -0.91 16 17 C -0.06 -0.49 4.37 -104.63 -0.46 -0.94 16 18 C -0.05 -0.36 9.70 -39.59 -0.38 -0.75 16 19 C -0.12 -0.73 10.05 -39.58 -0.40 -1.12 16 20 C -0.06 -0.47 9.56 -39.59 -0.38 -0.85 16 21 C -0.04 -0.45 6.85 -79.95 -0.55 -1.00 16 22 N 0.03 0.38 4.45 33.96 0.15 0.53 16 23 O -0.16 -2.21 18.45 -29.46 -0.54 -2.75 16 24 O -0.16 -2.14 18.45 -29.46 -0.54 -2.68 16 25 C -0.04 -0.40 9.21 -39.58 -0.36 -0.76 16 26 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 27 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 34 H 0.40 3.45 8.60 -40.82 -0.35 3.10 16 35 H 0.11 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.11 0.44 8.08 -51.92 -0.42 0.02 16 37 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.15 0.49 8.06 -52.48 -0.42 0.07 16 39 H 0.15 1.01 7.61 -52.48 -0.40 0.61 16 40 H 0.15 1.40 7.61 -52.49 -0.40 1.00 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -33.63 373.24 -9.98 -43.61 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.04 Total: 0.33 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.52 Total: -3.31 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.02 Total: -48.29 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.00 Total: -14.16 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.63 -9.98 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610227624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.262 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds