Wall clock time and date at job start Tue Mar 31 2020 18:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00550 * 2 1 4 4 H 1.48499 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46871 * 300.00255 * 3 2 1 6 6 H 1.48498 * 109.47039 * 60.00050 * 3 2 1 7 7 C 1.38814 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00337 * 163.06904 * 7 2 1 9 9 N 1.36936 * 120.00133 * 343.06978 * 7 2 1 10 10 C 1.46930 * 120.62745 * 331.84883 * 9 7 2 11 11 C 1.53198 * 108.77596 * 233.58488 * 10 9 7 12 12 C 1.53036 * 109.31287 * 305.36859 * 11 10 9 13 13 N 1.46498 * 109.45933 * 181.38633 * 12 11 10 14 14 C 1.34775 * 119.99837 * 155.24736 * 13 12 11 15 15 O 1.21277 * 120.00720 * 359.72539 * 14 13 12 16 16 C 1.50704 * 119.99949 * 179.72095 * 14 13 12 17 17 C 1.50693 * 109.47338 * 179.97438 * 16 14 13 18 18 C 1.38251 * 120.00373 * 269.72758 * 17 16 14 19 19 C 1.38215 * 120.00060 * 179.78399 * 18 17 16 20 20 C 1.38252 * 119.99999 * 0.47205 * 19 18 17 21 21 C 1.38212 * 120.00260 * 359.76231 * 20 19 18 22 22 N 1.48018 * 120.00157 * 180.02562 * 21 20 19 23 23 O 1.21809 * 119.99514 * 180.02562 * 22 21 20 24 24 O 1.21796 * 120.00264 * 0.02562 * 22 21 20 25 25 C 1.38217 * 119.99789 * 90.00314 * 17 16 14 26 26 C 1.53042 * 109.53047 * 61.36896 * 12 11 10 27 27 C 1.46927 * 120.63455 * 151.82859 * 9 7 2 28 28 H 0.97006 * 119.99529 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58632 * 113.79842 * 10 9 7 30 30 H 1.08992 * 109.70274 * 353.44523 * 10 9 7 31 31 H 1.08994 * 109.49550 * 185.41183 * 11 10 9 32 32 H 1.09002 * 109.49532 * 65.31691 * 11 10 9 33 33 H 1.09005 * 109.46134 * 301.35443 * 12 11 10 34 34 H 0.97000 * 119.99866 * 334.96692 * 13 12 11 35 35 H 1.09002 * 109.47271 * 300.00617 * 16 14 13 36 36 H 1.09009 * 109.47044 * 59.99990 * 16 14 13 37 37 H 1.07999 * 119.99985 * 0.02562 * 18 17 16 38 38 H 1.08003 * 120.00472 * 180.25254 * 19 18 17 39 39 H 1.08007 * 120.00393 * 179.78520 * 20 19 18 40 40 H 1.07999 * 119.99932 * 359.97438 * 25 17 16 41 41 H 1.08997 * 109.49256 * 58.57841 * 26 12 11 42 42 H 1.08997 * 109.49712 * 178.67549 * 26 12 11 43 43 H 1.09004 * 109.58320 * 246.20365 * 27 9 7 44 44 H 1.09001 * 109.58333 * 6.47805 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2729 9 7 1.3700 -2.3625 0.3443 10 6 0.2260 -2.3408 1.2660 11 6 0.4973 -3.3209 2.4119 12 6 0.8118 -4.7021 1.8327 13 7 1.0393 -5.6496 2.9266 14 6 0.8406 -6.9678 2.7284 15 8 0.4687 -7.3692 1.6461 16 6 1.0807 -7.9433 3.8518 17 6 0.7877 -9.3420 3.3738 18 6 -0.4848 -9.8659 3.5073 19 6 -0.7546 -11.1472 3.0648 20 6 0.2504 -11.9086 2.4976 21 6 1.5237 -11.3867 2.3686 22 7 2.5994 -12.2017 1.7608 23 8 3.7217 -11.7419 1.6475 24 8 2.3625 -13.3321 1.3740 25 6 1.7925 -10.1034 2.8072 26 6 2.0673 -4.6178 0.9617 27 6 1.8136 -3.6528 -0.2007 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6772 -2.6410 0.7346 30 1 0.0967 -1.3359 1.6676 31 1 -0.3833 -3.3861 3.0509 32 1 1.3471 -2.9698 2.9973 33 1 -0.0284 -5.0417 1.2269 34 1 1.3368 -5.3287 3.7922 35 1 2.1204 -7.8789 4.1730 36 1 0.4262 -7.7013 4.6893 37 1 -1.2689 -9.2725 3.9538 38 1 -1.7496 -11.5550 3.1654 39 1 0.0404 -12.9111 2.1550 40 1 2.7875 -9.6957 2.7066 41 1 2.9020 -4.2544 1.5609 42 1 2.3043 -5.6064 0.5685 43 1 1.0399 -4.0599 -0.8518 44 1 2.7330 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610227624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:58 Heat of formation + Delta-G solvation = -18.841304 kcal Electronic energy + Delta-G solvation = -27829.732489 eV Core-core repulsion = 23749.773213 eV Total energy + Delta-G solvation = -4079.959276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -43.29246 -41.29867 -40.21434 -38.88562 -37.73247 -36.00832 -34.39783 -33.85489 -32.84368 -31.84736 -31.28172 -29.02446 -27.65701 -26.79441 -24.17660 -23.85770 -23.62987 -22.88358 -21.44425 -20.98939 -19.95697 -19.72815 -18.87263 -18.65582 -17.91087 -17.55112 -17.21182 -16.86101 -16.71638 -15.85238 -15.66587 -15.40979 -15.34128 -15.00056 -14.73777 -14.55735 -14.35443 -14.06128 -13.88819 -13.29136 -13.24241 -13.04066 -12.95683 -12.80085 -12.64213 -12.55048 -12.45797 -12.36462 -12.25722 -12.21628 -12.00850 -11.89316 -11.56365 -11.37158 -10.98786 -10.58363 -10.54080 -10.16490 -9.99647 -8.72699 -7.89971 -5.35713 -1.25197 -0.06286 0.29451 0.36513 1.46439 1.48756 1.59285 1.66758 2.08021 2.48043 2.50467 3.24873 3.26467 3.47768 3.63282 3.72673 3.84326 3.91805 3.95286 3.96304 4.06273 4.12756 4.32157 4.44778 4.45773 4.51728 4.62593 4.72159 4.76880 4.82144 4.85105 4.98652 5.02375 5.03462 5.09617 5.14529 5.20709 5.27873 5.46254 5.52207 5.56496 5.63285 5.70757 6.37222 6.42689 6.63608 7.12944 7.32344 7.82056 8.34588 9.17166 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.002148 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.396578 B =13029.516247 C =13659.976440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.177 3.823 11 C -0.127 4.127 12 C 0.163 3.837 13 N -0.709 5.709 14 C 0.508 3.492 15 O -0.585 6.585 16 C -0.095 4.095 17 C -0.069 4.069 18 C -0.047 4.047 19 C -0.108 4.108 20 C -0.062 4.062 21 C -0.068 4.068 22 N 0.031 4.969 23 O -0.198 6.198 24 O -0.172 6.172 25 C -0.055 4.055 26 C -0.124 4.124 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.007 1.007 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.417 0.583 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.163 0.837 40 H 0.146 0.854 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.004 0.996 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 -20.735 16.144 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.222 1.222 6 H -0.212 1.212 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.050 3.950 11 C -0.167 4.167 12 C 0.058 3.942 13 N -0.361 5.361 14 C 0.296 3.704 15 O -0.465 6.465 16 C -0.134 4.134 17 C -0.070 4.070 18 C -0.065 4.065 19 C -0.126 4.126 20 C -0.081 4.081 21 C -0.151 4.151 22 N 0.545 4.455 23 O -0.407 6.407 24 O -0.388 6.388 25 C -0.074 4.074 26 C -0.164 4.164 27 C 0.017 3.983 28 H 0.060 0.940 29 H 0.011 0.989 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.254 0.746 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.191 0.809 38 H 0.201 0.799 39 H 0.181 0.819 40 H 0.164 0.836 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.022 0.978 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.986 -20.476 15.660 25.951 hybrid contribution 0.874 0.930 -0.681 1.447 sum -2.112 -19.546 14.980 24.716 Atomic orbital electron populations 1.70186 1.06670 1.25920 1.55349 1.25813 0.96063 1.01522 1.01080 0.85195 0.78581 0.79724 0.76846 1.19169 1.22200 1.21213 1.19536 0.92827 0.85845 1.41121 0.91647 1.44361 1.36013 1.02099 1.50800 1.20588 0.87558 0.97935 0.88873 1.22238 1.02142 0.93549 0.98735 1.20583 0.96774 0.88613 0.88213 1.46033 1.68482 1.05931 1.15651 1.21148 0.76267 0.83293 0.89679 1.90747 1.48042 1.78969 1.28748 1.20813 1.08084 0.87320 0.97166 1.19528 0.93228 0.95512 0.98764 1.22005 0.96026 0.95241 0.93202 1.21634 1.00299 0.93748 0.96912 1.21398 0.89203 1.02306 0.95158 1.21315 0.88784 0.94384 1.10616 1.44013 1.02395 1.00999 0.98102 1.94540 1.09101 1.75451 1.61634 1.94485 1.88422 1.04683 1.51211 1.21030 1.02105 0.90593 0.93705 1.22161 0.98155 0.98323 0.97779 1.20957 0.97141 0.86167 0.94004 0.93974 0.98923 0.91881 0.90099 0.91019 0.92604 0.74552 0.84772 0.82918 0.80939 0.79882 0.81933 0.83605 0.91379 0.92564 0.97823 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.42 11.19 21.65 0.24 -54.17 16 2 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 3 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.26 -14.31 9.58 84.03 0.81 -13.50 16 8 H 0.07 3.49 7.88 -2.91 -0.02 3.47 16 9 N -0.61 -30.26 2.99 -699.08 -2.09 -32.35 16 10 C 0.18 8.15 5.30 86.36 0.46 8.61 16 11 C -0.13 -4.13 5.55 30.67 0.17 -3.96 16 12 C 0.16 5.01 2.41 45.02 0.11 5.12 16 13 N -0.71 -14.44 5.08 -442.41 -2.25 -16.68 16 14 C 0.51 10.53 7.78 87.66 0.68 11.21 16 15 O -0.59 -18.45 15.70 -3.02 -0.05 -18.49 16 16 C -0.09 -0.90 5.83 29.10 0.17 -0.73 16 17 C -0.07 -0.94 4.37 -19.87 -0.09 -1.02 16 18 C -0.05 -0.45 9.70 22.27 0.22 -0.24 16 19 C -0.11 -0.98 10.05 22.27 0.22 -0.75 16 20 C -0.06 -0.90 9.56 22.27 0.21 -0.68 16 21 C -0.07 -1.41 6.85 36.37 0.25 -1.16 16 22 N 0.03 0.83 4.45 -46.46 -0.21 0.62 16 23 O -0.20 -5.82 18.45 18.87 0.35 -5.47 16 24 O -0.17 -4.62 18.45 18.89 0.35 -4.27 16 25 C -0.06 -1.02 9.21 22.27 0.21 -0.82 16 26 C -0.12 -4.24 5.65 30.67 0.17 -4.07 16 27 C 0.14 6.17 6.52 86.36 0.56 6.73 16 28 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 29 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 30 H 0.06 3.27 6.06 -2.39 -0.01 3.26 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.05 7.58 -2.38 -0.02 2.03 16 34 H 0.42 5.35 8.60 -92.71 -0.80 4.55 16 35 H 0.13 0.70 8.09 -2.39 -0.02 0.68 16 36 H 0.15 0.25 8.08 -2.38 -0.02 0.23 16 37 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 39 H 0.16 1.91 7.61 -2.91 -0.02 1.88 16 40 H 0.15 2.72 7.61 -2.91 -0.02 2.70 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -77.75 373.24 3.17 -74.58 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.23 Total: 7.81 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.57 Total: 2.44 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.30 Total: -102.59 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: 0.65 Total: -28.24 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -77.75 3.17 -74.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610227624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.735 kcal (2) G-P(sol) polarization free energy of solvation -77.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds