Wall clock time and date at job start Tue Mar 31 2020 18:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47009 * 269.99987 * 3 2 1 5 5 H 1.48498 * 109.47003 * 29.99801 * 3 2 1 6 6 H 1.48502 * 109.47197 * 149.99841 * 3 2 1 7 7 C 1.37875 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00631 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99735 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47250 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47247 * 180.02562 * 10 9 7 12 12 C 1.35987 * 116.99949 * 180.02562 * 11 10 9 13 13 C 1.38785 * 120.49455 * 359.97438 * 12 11 10 14 14 C 1.38786 * 118.44515 * 179.72625 * 13 12 11 15 15 C 1.38066 * 119.35632 * 0.02562 * 14 13 12 16 16 N 1.31964 * 120.95529 * 359.97438 * 15 14 13 17 17 C 1.32269 * 121.69107 * 0.02562 * 16 15 14 18 18 N 1.39582 * 119.73306 * 180.02562 * 17 16 15 19 19 C 1.34779 * 119.99525 * 359.97438 * 18 17 16 20 20 O 1.21583 * 120.00061 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99733 * 179.97438 * 19 18 17 22 22 C 1.46509 * 119.99934 * 179.97438 * 21 19 18 23 23 C 1.52995 * 119.80983 * 250.98544 * 22 21 19 24 24 C 1.53001 * 60.65358 * 247.68919 * 23 22 21 25 25 H 1.09004 * 119.81000 * 112.31156 * 24 23 22 26 26 C 1.54479 * 118.06657 * 269.59175 * 24 23 22 27 27 O 1.44430 * 104.80176 * 86.82648 * 26 24 23 28 28 C 1.43867 * 105.56805 * 319.94668 * 27 26 24 29 29 H 0.97008 * 120.00121 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47549 * 60.00431 * 9 7 2 31 31 H 1.08999 * 109.47569 * 300.00234 * 9 7 2 32 32 H 1.08995 * 109.47110 * 59.99784 * 10 9 7 33 33 H 1.09007 * 109.46849 * 300.00274 * 10 9 7 34 34 H 1.08001 * 120.77713 * 359.74965 * 13 12 11 35 35 H 1.08008 * 120.32259 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.52141 * 179.97438 * 15 14 13 37 37 H 0.97000 * 120.00336 * 179.97438 * 18 17 16 38 38 H 0.97000 * 120.00129 * 359.97438 * 21 19 18 39 39 H 1.08997 * 117.43428 * 355.36002 * 23 22 21 40 40 H 1.08992 * 117.43657 * 140.01357 * 23 22 21 41 41 H 1.08999 * 110.37473 * 205.65138 * 26 24 23 42 42 H 1.08997 * 110.37095 * 327.99519 * 26 24 23 43 43 H 1.09005 * 109.55577 * 281.16810 * 28 27 26 44 44 H 1.09004 * 110.92699 * 159.01786 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4505 -2.6366 0.0001 12 6 6.0679 -3.8483 -0.0003 13 6 5.3220 -5.0187 -0.0002 14 6 5.9959 -6.2320 -0.0065 15 6 7.3766 -6.2394 -0.0121 16 7 8.0614 -5.1113 -0.0120 17 6 7.4600 -3.9333 -0.0061 18 7 8.2247 -2.7656 -0.0068 19 6 9.5703 -2.8414 -0.0129 20 8 10.1180 -3.9269 -0.0174 21 7 10.3087 -1.7140 -0.0141 22 6 11.7715 -1.7964 -0.0202 23 6 12.5603 -1.4093 1.2323 24 6 12.6707 -0.5399 -0.0218 25 1 12.2616 0.4705 -0.0185 26 6 13.7810 -0.8742 -1.0425 27 8 13.1960 -1.8683 -1.9117 28 6 12.4368 -2.7354 -1.0506 29 1 -0.4851 0.8401 -0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8745 -0.6808 -0.8905 32 1 3.6578 -3.1506 -0.8896 33 1 3.6584 -3.1503 0.8904 34 1 4.2425 -4.9861 0.0042 35 1 5.4457 -7.1614 -0.0071 36 1 7.9037 -7.1820 -0.0165 37 1 7.7877 -1.8996 -0.0029 38 1 9.8717 -0.8480 -0.0110 39 1 11.9985 -1.0061 2.0749 40 1 13.4209 -2.0248 1.4940 41 1 14.0532 0.0146 -1.6118 42 1 14.6542 -1.2820 -0.5333 43 1 13.1091 -3.4324 -0.5502 44 1 11.6782 -3.2777 -1.6151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887987357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:24 Heat of formation + Delta-G solvation = -19.535559 kcal Electronic energy + Delta-G solvation = -27908.412421 eV Core-core repulsion = 23828.423040 eV Total energy + Delta-G solvation = -4079.989381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.23902 -40.66602 -39.24994 -37.88403 -35.66959 -34.81524 -33.46877 -33.15512 -31.64738 -30.87786 -29.31238 -28.50762 -25.74675 -25.66198 -24.00175 -22.88057 -22.04668 -21.32163 -20.61162 -20.24716 -18.73578 -18.25499 -17.77640 -17.01748 -16.58710 -16.13683 -16.01383 -15.82057 -15.66525 -15.21846 -14.91583 -14.64947 -14.29732 -14.27887 -14.00792 -13.80371 -13.64107 -13.10606 -12.95031 -12.59318 -12.48489 -12.23233 -12.07976 -11.57855 -11.30659 -11.27461 -11.02718 -11.00709 -10.73999 -10.47352 -10.32117 -10.17911 -9.97638 -9.96135 -9.47042 -9.31179 -9.15085 -9.12530 -8.71938 -7.72942 -6.22543 -4.24323 1.20294 1.39827 2.15680 2.85823 3.15591 3.19950 3.27842 3.30310 3.41145 3.61841 3.73017 3.98008 3.99305 4.07894 4.29480 4.50086 4.58729 4.60378 4.86475 4.90926 5.01546 5.11191 5.12070 5.19170 5.26157 5.27637 5.42456 5.43861 5.57434 5.65777 5.74006 5.76925 5.98067 6.11650 6.22708 6.26235 6.34686 6.36527 6.47138 6.67367 6.92663 7.09051 7.47131 7.55408 7.65560 8.15819 8.28524 8.48839 8.77764 9.37015 10.89895 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.002805 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.210328 B = 9981.379516 C =12124.803663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.074 3.926 11 O -0.321 6.321 12 C 0.064 3.936 13 C -0.144 4.144 14 C -0.161 4.161 15 C 0.079 3.921 16 N -0.441 5.441 17 C 0.346 3.654 18 N -0.660 5.660 19 C 0.702 3.298 20 O -0.527 6.527 21 N -0.708 5.708 22 C 0.090 3.910 23 C -0.139 4.139 24 C -0.195 4.195 25 H 0.127 0.873 26 C 0.073 3.927 27 O -0.371 6.371 28 C 0.087 3.913 29 H 0.267 0.733 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.420 0.580 38 H 0.400 0.600 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.217 -4.570 1.053 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.045 4.045 10 C 0.000 4.000 11 O -0.234 6.234 12 C 0.013 3.987 13 C -0.171 4.171 14 C -0.182 4.182 15 C -0.078 4.078 16 N -0.156 5.156 17 C 0.113 3.887 18 N -0.310 5.310 19 C 0.401 3.599 20 O -0.398 6.398 21 N -0.364 5.364 22 C 0.001 3.999 23 C -0.178 4.178 24 C -0.215 4.215 25 H 0.145 0.855 26 C -0.004 4.004 27 O -0.289 6.289 28 C 0.009 3.991 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.175 0.825 37 H 0.257 0.743 38 H 0.235 0.765 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 25.598 -5.267 0.782 26.145 hybrid contribution -1.540 1.808 0.342 2.400 sum 24.057 -3.458 1.124 24.331 Atomic orbital electron populations 1.69887 1.06286 1.27308 1.49838 1.24937 0.94768 0.99217 0.94063 0.86751 0.80366 0.83326 0.78740 1.20041 1.21136 1.18860 1.20810 0.88222 0.94986 1.52691 0.90702 1.19583 0.97050 0.89994 0.97846 1.23137 0.73968 1.02228 1.00705 1.86042 1.24567 1.24819 1.87971 1.19485 0.90812 0.87024 1.01416 1.21619 1.01249 0.91334 1.02860 1.21911 0.95537 0.98257 1.02531 1.22432 0.91096 0.95564 0.98709 1.67617 1.38307 0.96188 1.13460 1.17442 0.84053 0.86572 1.00655 1.42430 1.04770 1.08137 1.75661 1.15831 0.80967 0.84538 0.78533 1.91025 1.69989 1.25561 1.53191 1.44190 1.03950 1.07812 1.80452 1.22136 0.79216 0.98278 1.00268 1.23644 1.01711 1.00414 0.92068 1.24729 0.99624 0.96822 1.00286 0.85494 1.22937 0.93869 0.92761 0.90817 1.89124 1.66599 1.42099 1.31122 1.22883 0.94604 0.90934 0.90655 0.92355 0.95426 0.95841 0.92310 0.92309 0.83570 0.84663 0.82536 0.74340 0.76452 0.87381 0.87781 0.88266 0.91521 0.90931 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.96 55.43 0.77 -25.61 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.53 -14.19 9.66 -34.44 -0.33 -14.52 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.16 4.41 -27.88 -0.12 -0.29 16 10 C 0.07 1.37 4.70 37.16 0.17 1.54 16 11 O -0.32 -5.50 9.39 -19.70 -0.18 -5.68 16 12 C 0.06 1.02 6.72 -38.92 -0.26 0.75 16 13 C -0.14 -2.01 9.14 -39.18 -0.36 -2.37 16 14 C -0.16 -1.93 10.10 -39.44 -0.40 -2.33 16 15 C 0.08 1.03 11.17 -17.56 -0.20 0.83 16 16 N -0.44 -7.14 7.87 -12.23 -0.10 -7.23 16 17 C 0.35 5.51 7.45 -154.44 -1.15 4.36 16 18 N -0.66 -9.20 5.40 -15.67 -0.08 -9.28 16 19 C 0.70 9.83 8.25 -86.92 -0.72 9.11 16 20 O -0.53 -8.98 12.98 5.29 0.07 -8.91 16 21 N -0.71 -7.43 5.68 -50.95 -0.29 -7.72 16 22 C 0.09 0.88 3.16 -130.25 -0.41 0.47 16 23 C -0.14 -1.03 10.07 -26.73 -0.27 -1.30 16 24 C -0.20 -1.38 7.21 -89.05 -0.64 -2.02 16 25 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 26 C 0.07 0.53 7.45 37.93 0.28 0.81 16 27 O -0.37 -4.07 11.62 -35.23 -0.41 -4.48 16 28 C 0.09 0.96 6.53 37.93 0.25 1.21 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 32 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 33 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 34 H 0.15 1.91 6.44 -52.49 -0.34 1.57 16 35 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 36 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.42 5.02 8.06 -40.82 -0.33 4.69 16 38 H 0.40 3.19 8.84 -40.82 -0.36 2.83 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.11 1.46 6.89 -51.93 -0.36 1.10 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -33.58 368.25 -9.51 -43.09 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.92 Total: 6.16 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -4.25 Total: -1.81 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.30 Total: -49.84 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.53 Total: -19.07 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.58 -9.51 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887987357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.559 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds