Wall clock time and date at job start Tue Mar 31 2020 18:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47009 * 269.99987 * 3 2 1 5 5 H 1.48498 * 109.47003 * 29.99801 * 3 2 1 6 6 H 1.48502 * 109.47197 * 149.99841 * 3 2 1 7 7 C 1.37875 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00631 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99735 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47250 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47247 * 180.02562 * 10 9 7 12 12 C 1.35987 * 116.99949 * 180.02562 * 11 10 9 13 13 C 1.38785 * 120.49455 * 359.97438 * 12 11 10 14 14 C 1.38786 * 118.44515 * 179.72625 * 13 12 11 15 15 C 1.38066 * 119.35632 * 0.02562 * 14 13 12 16 16 N 1.31964 * 120.95529 * 359.97438 * 15 14 13 17 17 C 1.32269 * 121.69107 * 0.02562 * 16 15 14 18 18 N 1.39582 * 119.73306 * 180.02562 * 17 16 15 19 19 C 1.34779 * 119.99525 * 359.97438 * 18 17 16 20 20 O 1.21583 * 120.00061 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99733 * 179.97438 * 19 18 17 22 22 C 1.46509 * 119.99934 * 179.97438 * 21 19 18 23 23 C 1.52995 * 119.80983 * 250.98544 * 22 21 19 24 24 C 1.53001 * 60.65358 * 247.68919 * 23 22 21 25 25 H 1.09004 * 119.81000 * 112.31156 * 24 23 22 26 26 C 1.54479 * 118.06657 * 269.59175 * 24 23 22 27 27 O 1.44430 * 104.80176 * 86.82648 * 26 24 23 28 28 C 1.43867 * 105.56805 * 319.94668 * 27 26 24 29 29 H 0.97008 * 120.00121 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47549 * 60.00431 * 9 7 2 31 31 H 1.08999 * 109.47569 * 300.00234 * 9 7 2 32 32 H 1.08995 * 109.47110 * 59.99784 * 10 9 7 33 33 H 1.09007 * 109.46849 * 300.00274 * 10 9 7 34 34 H 1.08001 * 120.77713 * 359.74965 * 13 12 11 35 35 H 1.08008 * 120.32259 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.52141 * 179.97438 * 15 14 13 37 37 H 0.97000 * 120.00336 * 179.97438 * 18 17 16 38 38 H 0.97000 * 120.00129 * 359.97438 * 21 19 18 39 39 H 1.08997 * 117.43428 * 355.36002 * 23 22 21 40 40 H 1.08992 * 117.43657 * 140.01357 * 23 22 21 41 41 H 1.08999 * 110.37473 * 205.65138 * 26 24 23 42 42 H 1.08997 * 110.37095 * 327.99519 * 26 24 23 43 43 H 1.09005 * 109.55577 * 281.16810 * 28 27 26 44 44 H 1.09004 * 110.92699 * 159.01786 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4505 -2.6366 0.0001 12 6 6.0679 -3.8483 -0.0003 13 6 5.3220 -5.0187 -0.0002 14 6 5.9959 -6.2320 -0.0065 15 6 7.3766 -6.2394 -0.0121 16 7 8.0614 -5.1113 -0.0120 17 6 7.4600 -3.9333 -0.0061 18 7 8.2247 -2.7656 -0.0068 19 6 9.5703 -2.8414 -0.0129 20 8 10.1180 -3.9269 -0.0174 21 7 10.3087 -1.7140 -0.0141 22 6 11.7715 -1.7964 -0.0202 23 6 12.5603 -1.4093 1.2323 24 6 12.6707 -0.5399 -0.0218 25 1 12.2616 0.4705 -0.0185 26 6 13.7810 -0.8742 -1.0425 27 8 13.1960 -1.8683 -1.9117 28 6 12.4368 -2.7354 -1.0506 29 1 -0.4851 0.8401 -0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8745 -0.6808 -0.8905 32 1 3.6578 -3.1506 -0.8896 33 1 3.6584 -3.1503 0.8904 34 1 4.2425 -4.9861 0.0042 35 1 5.4457 -7.1614 -0.0071 36 1 7.9037 -7.1820 -0.0165 37 1 7.7877 -1.8996 -0.0029 38 1 9.8717 -0.8480 -0.0110 39 1 11.9985 -1.0061 2.0749 40 1 13.4209 -2.0248 1.4940 41 1 14.0532 0.0146 -1.6118 42 1 14.6542 -1.2820 -0.5333 43 1 13.1091 -3.4324 -0.5502 44 1 11.6782 -3.2777 -1.6151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887987357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:23 Heat of formation + Delta-G solvation = -43.327822 kcal Electronic energy + Delta-G solvation = -27909.444131 eV Core-core repulsion = 23828.423040 eV Total energy + Delta-G solvation = -4081.021091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20717 -41.56108 -40.28323 -39.11718 -36.45851 -35.91916 -35.39584 -34.00892 -33.05847 -32.36863 -30.42126 -29.27441 -27.31288 -26.41350 -25.18842 -24.07782 -23.06470 -22.32155 -21.83965 -21.14482 -19.83372 -19.44284 -19.04042 -18.29842 -17.77902 -17.25286 -17.23653 -16.78539 -16.42737 -16.30321 -16.24433 -15.80746 -15.51324 -15.30811 -15.14952 -14.97235 -14.75430 -14.31203 -14.10267 -13.84372 -13.64693 -13.33661 -13.17116 -12.84757 -12.71453 -12.19709 -12.18528 -12.03202 -11.88838 -11.83430 -11.72876 -11.64675 -11.47506 -11.40643 -10.80835 -10.67425 -10.42769 -10.25092 -9.96247 -8.84865 -8.33700 -6.40571 0.13516 0.28972 1.23263 1.37463 1.38870 1.50424 1.98428 2.09319 2.33859 2.37392 2.74160 2.90256 3.01922 3.04126 3.32841 3.43211 3.55422 3.84873 3.89567 3.95650 3.98661 4.12272 4.24167 4.27290 4.30478 4.38981 4.45800 4.67160 4.71476 4.73664 4.78602 4.86514 4.93949 5.05677 5.06992 5.14470 5.25772 5.32235 5.41105 5.46931 5.55011 5.66339 5.77156 6.16514 6.28573 6.65416 6.66162 7.12611 7.24696 7.47535 8.81894 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.002805 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.210328 B = 9981.379516 C =12124.803663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.042 0.958 9 C -0.005 4.005 10 C 0.086 3.914 11 O -0.325 6.325 12 C 0.042 3.958 13 C -0.147 4.147 14 C -0.148 4.148 15 C 0.077 3.923 16 N -0.471 5.471 17 C 0.332 3.668 18 N -0.659 5.659 19 C 0.698 3.302 20 O -0.562 6.562 21 N -0.694 5.694 22 C 0.054 3.946 23 C -0.128 4.128 24 C -0.169 4.169 25 H 0.147 0.853 26 C 0.065 3.935 27 O -0.394 6.394 28 C 0.089 3.911 29 H 0.269 0.731 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.185 0.815 37 H 0.426 0.574 38 H 0.413 0.587 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.281 -3.806 1.577 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.574 4.574 8 H 0.061 0.939 9 C -0.043 4.043 10 C 0.012 3.988 11 O -0.238 6.238 12 C -0.009 4.009 13 C -0.174 4.174 14 C -0.169 4.169 15 C -0.080 4.080 16 N -0.186 5.186 17 C 0.099 3.901 18 N -0.309 5.309 19 C 0.398 3.602 20 O -0.436 6.436 21 N -0.351 5.351 22 C -0.035 4.035 23 C -0.167 4.167 24 C -0.188 4.188 25 H 0.164 0.836 26 C -0.011 4.011 27 O -0.313 6.313 28 C 0.012 3.988 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.191 0.809 36 H 0.202 0.798 37 H 0.264 0.736 38 H 0.250 0.750 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 27.692 -4.471 1.309 28.081 hybrid contribution -2.140 1.412 0.158 2.569 sum 25.552 -3.059 1.467 25.777 Atomic orbital electron populations 1.70033 1.08225 1.28448 1.51667 1.25899 0.95589 1.03404 0.93763 0.85679 0.79610 0.78234 0.79293 1.19144 1.20976 1.16778 1.21124 0.90678 0.93817 1.51745 0.93945 1.19434 0.94159 0.92624 0.98035 1.22752 0.75172 0.99817 1.01080 1.85965 1.23235 1.25878 1.88739 1.19597 0.90936 0.86988 1.03422 1.21878 1.01701 0.91593 1.02231 1.22264 0.95225 0.98967 1.00439 1.23033 0.91932 0.95816 0.97183 1.67674 1.39402 0.97015 1.14515 1.17615 0.84276 0.87119 1.01090 1.42430 1.04830 1.08099 1.75530 1.16004 0.80963 0.84944 0.78306 1.90987 1.70571 1.27117 1.54905 1.44053 1.04332 1.07373 1.79294 1.22282 0.78764 1.00252 1.02206 1.23735 1.01237 0.99987 0.91724 1.24853 0.97825 0.96694 0.99463 0.83552 1.23234 0.94206 0.92752 0.90923 1.89094 1.66921 1.42930 1.32379 1.22688 0.94118 0.91402 0.90617 0.92211 0.95095 0.95299 0.92045 0.91985 0.82856 0.80942 0.79767 0.73574 0.75000 0.86505 0.86853 0.86380 0.89973 0.90705 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.72 13.96 21.45 0.30 -56.43 16 2 C 0.01 0.64 5.47 84.65 0.46 1.10 16 3 Si 0.95 41.88 27.47 68.60 1.88 43.76 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 7 C -0.54 -29.03 9.66 25.60 0.25 -28.78 16 8 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 9 C 0.00 -0.22 4.41 29.85 0.13 -0.09 16 10 C 0.09 3.16 4.70 71.98 0.34 3.49 16 11 O -0.32 -10.88 9.39 -93.41 -0.88 -11.75 16 12 C 0.04 1.29 6.72 22.70 0.15 1.44 16 13 C -0.15 -3.91 9.14 22.53 0.21 -3.70 16 14 C -0.15 -3.19 10.10 22.36 0.23 -2.97 16 15 C 0.08 1.89 11.17 84.63 0.95 2.83 16 16 N -0.47 -15.05 7.87 -192.59 -1.52 -16.56 16 17 C 0.33 10.49 7.45 132.99 0.99 11.48 16 18 N -0.66 -18.33 5.40 -321.77 -1.74 -20.07 16 19 C 0.70 19.68 8.25 179.06 1.48 21.16 16 20 O -0.56 -19.60 12.98 -3.98 -0.05 -19.65 16 21 N -0.69 -14.12 5.68 -433.38 -2.46 -16.58 16 22 C 0.05 0.99 3.16 4.61 0.01 1.01 16 23 C -0.13 -1.60 10.07 30.59 0.31 -1.29 16 24 C -0.17 -1.95 7.21 -9.78 -0.07 -2.02 16 25 H 0.15 1.14 8.14 -2.38 -0.02 1.12 16 26 C 0.06 0.80 7.45 72.48 0.54 1.34 16 27 O -0.39 -8.45 11.62 -148.98 -1.73 -10.18 16 28 C 0.09 2.00 6.53 72.48 0.47 2.48 16 29 H 0.27 15.07 8.31 -92.70 -0.77 14.29 16 30 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 31 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 32 H 0.06 2.19 7.70 -2.39 -0.02 2.17 16 33 H 0.06 2.20 7.70 -2.38 -0.02 2.18 16 34 H 0.15 3.78 6.44 -2.91 -0.02 3.77 16 35 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.43 10.07 8.06 -92.71 -0.75 9.32 16 38 H 0.41 6.06 8.84 -92.71 -0.82 5.24 16 39 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.08 2.22 6.89 -2.39 -0.02 2.20 16 Total: -1.00 -74.58 368.25 -0.31 -74.89 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.57 Total: 25.09 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.44 Total: 7.48 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -5.41 Total: -109.64 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -2.66 Total: -41.58 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.88 Total: 43.76 kcal Total: -74.58 -0.31 -74.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887987357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.565 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds