Wall clock time and date at job start Tue Mar 31 2020 18:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48504 * 109.46468 * 239.99635 * 3 2 1 5 5 H 1.48497 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47432 * 119.99889 * 3 2 1 7 7 C 1.38810 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99995 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99896 * 180.02562 * 9 7 2 11 11 C 1.53049 * 109.45807 * 205.00038 * 10 9 7 12 12 C 1.53186 * 109.31315 * 178.62520 * 11 10 9 13 13 N 1.46926 * 108.77347 * 54.63586 * 12 11 10 14 14 C 1.34776 * 120.63075 * 126.36845 * 13 12 11 15 15 O 1.21558 * 120.00018 * 187.84187 * 14 13 12 16 16 C 1.47886 * 120.00002 * 7.84905 * 14 13 12 17 17 C 1.39281 * 119.60628 * 189.68175 * 16 14 13 18 18 C 1.38532 * 119.12003 * 180.02562 * 17 16 14 19 19 C 1.38908 * 118.53694 * 0.24619 * 18 17 16 20 20 C 1.39727 * 119.42981 * 359.40327 * 19 18 17 21 21 N 1.31988 * 120.36404 * 0.66108 * 20 19 18 22 22 O 1.35992 * 120.44142 * 180.54489 * 20 19 18 23 23 C 1.43135 * 116.72209 * 342.74722 * 22 20 19 24 24 C 1.53453 * 108.34196 * 46.50614 * 23 22 20 25 25 O 1.35787 * 119.57558 * 179.97438 * 19 18 17 26 26 C 1.46930 * 118.73973 * 306.63988 * 13 12 11 27 27 C 1.52757 * 109.00586 * 53.31278 * 26 13 12 28 28 H 0.96998 * 120.00056 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00023 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.46133 * 324.96781 * 10 9 7 31 31 H 1.09002 * 109.49779 * 58.67315 * 11 10 9 32 32 H 1.08998 * 109.51869 * 298.59251 * 11 10 9 33 33 H 1.08998 * 109.59014 * 294.84805 * 12 11 10 34 34 H 1.09002 * 109.70329 * 174.49021 * 12 11 10 35 35 H 1.08001 * 120.44337 * 0.09443 * 17 16 14 36 36 H 1.08000 * 120.73040 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.69023 * 166.21869 * 23 22 20 38 38 H 1.09007 * 109.68755 * 286.79422 * 23 22 20 39 39 H 1.08998 * 109.71351 * 59.81607 * 24 23 22 40 40 H 1.08997 * 109.71911 * 180.41444 * 24 23 22 41 41 H 1.09002 * 109.58864 * 173.14959 * 26 13 12 42 42 H 1.08998 * 109.58577 * 293.57492 * 26 13 12 43 43 H 1.09000 * 109.56266 * 185.55594 * 27 26 13 44 44 H 1.08997 * 109.36076 * 65.49904 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.1808 -4.7525 -0.6084 12 6 1.9622 -6.0698 -0.6371 13 7 2.4404 -6.3655 0.7204 14 6 2.1711 -7.5521 1.3000 15 8 2.4462 -7.7333 2.4701 16 6 1.5410 -8.6337 0.5124 17 6 1.0818 -9.7783 1.1597 18 6 0.4937 -10.7854 0.4121 19 6 0.3886 -10.6164 -0.9627 20 6 0.8634 -9.4398 -1.5480 21 7 1.4191 -8.5016 -0.8042 22 8 0.7610 -9.2480 -2.8904 23 6 0.5169 -10.4099 -3.6898 24 6 -0.6082 -11.2206 -3.0326 25 8 -0.1837 -11.5905 -1.7159 26 6 3.2127 -5.3409 1.4362 27 6 2.4220 -4.0339 1.4395 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9688 -3.5508 -0.5876 31 1 0.9027 -4.4723 -1.6244 32 1 0.2810 -4.8763 -0.0058 33 1 2.8131 -5.9754 -1.3117 34 1 1.3123 -6.8753 -0.9791 35 1 1.1818 -9.8789 2.2303 36 1 0.1289 -11.6841 0.8871 37 1 0.2149 -10.1088 -4.6929 38 1 1.4220 -11.0150 -3.7443 39 1 -1.5110 -10.6130 -2.9704 40 1 -0.8078 -12.1164 -3.6205 41 1 3.3857 -5.6643 2.4627 42 1 4.1676 -5.1857 0.9340 43 1 3.0273 -3.2422 1.8811 44 1 1.5108 -4.1643 2.0232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996767823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:15 Heat of formation + Delta-G solvation = -26.554692 kcal Electronic energy + Delta-G solvation = -28785.621601 eV Core-core repulsion = 24705.327848 eV Total energy + Delta-G solvation = -4080.293753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00331 -40.31409 -38.57925 -37.87197 -37.23491 -34.48622 -32.88567 -31.99036 -31.74408 -30.63252 -29.47705 -28.91597 -25.88533 -25.13972 -24.21287 -23.14257 -22.46984 -21.93405 -20.61533 -19.51875 -18.77630 -18.34173 -18.04533 -17.14026 -16.72704 -16.28036 -15.81892 -15.52644 -15.27883 -14.97132 -14.87301 -14.76075 -14.27682 -14.14483 -13.79341 -13.55906 -13.45804 -13.30709 -13.03145 -12.94162 -12.41313 -12.13910 -11.99369 -11.66821 -11.51900 -11.35875 -10.85548 -10.75594 -10.72565 -10.35173 -10.25922 -10.22496 -9.95139 -9.92445 -9.64846 -8.94156 -8.79314 -8.73435 -8.33695 -6.90880 -5.72196 -3.00697 0.30146 0.74490 2.15550 2.43842 2.64223 3.09430 3.46875 3.49981 3.51122 3.52099 3.54484 3.92822 4.13076 4.27331 4.36279 4.50805 4.63050 4.65893 4.79884 4.92801 4.93431 5.26269 5.36692 5.46872 5.52563 5.53747 5.65261 5.69250 5.83992 5.87333 5.94461 6.09183 6.11357 6.32378 6.44913 6.46132 6.55626 6.66208 6.71552 6.77642 7.04760 7.15794 7.33843 7.59864 7.73425 8.19810 8.46519 9.57356 10.16089 10.51034 11.50543 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002693 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.145464 B =10394.189942 C =11444.089861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.139 4.139 12 C 0.078 3.922 13 N -0.580 5.580 14 C 0.571 3.429 15 O -0.541 6.541 16 C 0.093 3.907 17 C -0.105 4.105 18 C -0.079 4.079 19 C 0.029 3.971 20 C 0.257 3.743 21 N -0.429 5.429 22 O -0.289 6.289 23 C 0.025 3.975 24 C 0.017 3.983 25 O -0.300 6.300 26 C 0.110 3.890 27 C -0.149 4.149 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 -28.064 -6.208 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.067 3.933 11 C -0.178 4.178 12 C -0.045 4.045 13 N -0.311 5.311 14 C 0.357 3.643 15 O -0.419 6.419 16 C -0.044 4.044 17 C -0.126 4.126 18 C -0.105 4.105 19 C -0.019 4.019 20 C 0.075 3.925 21 N -0.152 5.152 22 O -0.199 6.199 23 C -0.051 4.051 24 C -0.059 4.059 25 O -0.213 6.213 26 C -0.012 4.012 27 C -0.190 4.190 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.158 0.842 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.150 0.850 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.146 0.854 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.259 -27.266 -6.106 27.942 hybrid contribution -0.248 0.333 0.047 0.418 sum 0.011 -26.932 -6.059 27.606 Atomic orbital electron populations 1.69654 1.05108 1.25682 1.57820 1.24738 0.95498 0.97649 1.03163 0.86280 0.78510 0.83655 0.77821 1.21316 1.21761 1.21300 1.19210 0.90953 0.84167 1.42509 0.91243 1.42440 1.05772 0.99758 1.88501 1.20217 0.94489 0.86081 0.92505 1.22233 0.99103 0.94611 1.01876 1.23001 1.00230 0.99866 0.81367 1.48047 1.52025 1.13634 1.17361 1.17640 0.78991 0.81902 0.85785 1.90778 1.54507 1.81462 1.15136 1.20968 0.99893 0.95609 0.87929 1.21908 0.96467 0.91695 1.02487 1.20917 0.99526 1.00591 0.89431 1.19950 0.99176 0.90324 0.92474 1.19599 0.96925 0.90534 0.85420 1.66997 1.14959 1.26986 1.06271 1.86275 1.87031 1.33555 1.12998 1.23789 0.99205 0.86753 0.95325 1.23780 0.97262 1.02636 0.82180 1.86258 1.74399 1.33887 1.26764 1.21713 0.93968 0.87917 0.97633 1.22571 1.00160 0.94747 1.01512 0.93526 0.78333 0.93476 0.90700 0.92279 0.91747 0.84223 0.82180 0.82728 0.84975 0.89888 0.89738 0.85353 0.89614 0.91552 0.90690 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.72 -18.52 5.12 -53.38 -0.27 -18.79 16 10 C 0.18 3.62 2.73 -67.88 -0.19 3.43 16 11 C -0.14 -2.45 5.55 -26.61 -0.15 -2.60 16 12 C 0.08 1.19 5.88 -3.71 -0.02 1.17 16 13 N -0.58 -9.27 2.98 -174.13 -0.52 -9.79 16 14 C 0.57 9.06 7.64 -12.31 -0.09 8.97 16 15 O -0.54 -9.60 15.78 5.31 0.08 -9.52 16 16 C 0.09 1.25 6.57 -83.07 -0.55 0.70 16 17 C -0.10 -1.11 9.62 -39.09 -0.38 -1.49 16 18 C -0.08 -0.70 10.08 -39.22 -0.40 -1.09 16 19 C 0.03 0.29 6.51 -38.78 -0.25 0.03 16 20 C 0.26 2.95 7.55 -16.93 -0.13 2.82 16 21 N -0.43 -5.69 6.13 -9.70 -0.06 -5.75 16 22 O -0.29 -2.95 10.51 -32.33 -0.34 -3.29 16 23 C 0.03 0.13 7.24 37.39 0.27 0.40 16 24 C 0.02 0.08 7.27 37.39 0.27 0.35 16 25 O -0.30 -2.40 10.41 -31.69 -0.33 -2.73 16 26 C 0.11 1.78 6.42 -3.93 -0.03 1.75 16 27 C -0.15 -2.81 5.64 -26.84 -0.15 -2.96 16 28 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.38 10.47 7.80 -40.82 -0.32 10.15 16 30 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.14 2.10 4.02 -84.90 -0.34 1.76 16 35 H 0.16 1.52 7.66 -52.49 -0.40 1.12 16 36 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -34.56 359.16 -8.39 -42.95 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.04 Total: 7.58 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -2.03 Total: 4.17 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.13 Total: -62.23 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.59 Total: -15.54 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.56 -8.39 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996767823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.397 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds