Wall clock time and date at job start Tue Mar 31 2020 18:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48504 * 109.46468 * 239.99635 * 3 2 1 5 5 H 1.48497 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47432 * 119.99889 * 3 2 1 7 7 C 1.38810 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99995 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99896 * 180.02562 * 9 7 2 11 11 C 1.53049 * 109.45807 * 205.00038 * 10 9 7 12 12 C 1.53186 * 109.31315 * 178.62520 * 11 10 9 13 13 N 1.46926 * 108.77347 * 54.63586 * 12 11 10 14 14 C 1.34776 * 120.63075 * 126.36845 * 13 12 11 15 15 O 1.21558 * 120.00018 * 187.84187 * 14 13 12 16 16 C 1.47886 * 120.00002 * 7.84905 * 14 13 12 17 17 C 1.39281 * 119.60628 * 189.68175 * 16 14 13 18 18 C 1.38532 * 119.12003 * 180.02562 * 17 16 14 19 19 C 1.38908 * 118.53694 * 0.24619 * 18 17 16 20 20 C 1.39727 * 119.42981 * 359.40327 * 19 18 17 21 21 N 1.31988 * 120.36404 * 0.66108 * 20 19 18 22 22 O 1.35992 * 120.44142 * 180.54489 * 20 19 18 23 23 C 1.43135 * 116.72209 * 342.74722 * 22 20 19 24 24 C 1.53453 * 108.34196 * 46.50614 * 23 22 20 25 25 O 1.35787 * 119.57558 * 179.97438 * 19 18 17 26 26 C 1.46930 * 118.73973 * 306.63988 * 13 12 11 27 27 C 1.52757 * 109.00586 * 53.31278 * 26 13 12 28 28 H 0.96998 * 120.00056 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00023 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.46133 * 324.96781 * 10 9 7 31 31 H 1.09002 * 109.49779 * 58.67315 * 11 10 9 32 32 H 1.08998 * 109.51869 * 298.59251 * 11 10 9 33 33 H 1.08998 * 109.59014 * 294.84805 * 12 11 10 34 34 H 1.09002 * 109.70329 * 174.49021 * 12 11 10 35 35 H 1.08001 * 120.44337 * 0.09443 * 17 16 14 36 36 H 1.08000 * 120.73040 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.69023 * 166.21869 * 23 22 20 38 38 H 1.09007 * 109.68755 * 286.79422 * 23 22 20 39 39 H 1.08998 * 109.71351 * 59.81607 * 24 23 22 40 40 H 1.08997 * 109.71911 * 180.41444 * 24 23 22 41 41 H 1.09002 * 109.58864 * 173.14959 * 26 13 12 42 42 H 1.08998 * 109.58577 * 293.57492 * 26 13 12 43 43 H 1.09000 * 109.56266 * 185.55594 * 27 26 13 44 44 H 1.08997 * 109.36076 * 65.49904 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.1808 -4.7525 -0.6084 12 6 1.9622 -6.0698 -0.6371 13 7 2.4404 -6.3655 0.7204 14 6 2.1711 -7.5521 1.3000 15 8 2.4462 -7.7333 2.4701 16 6 1.5410 -8.6337 0.5124 17 6 1.0818 -9.7783 1.1597 18 6 0.4937 -10.7854 0.4121 19 6 0.3886 -10.6164 -0.9627 20 6 0.8634 -9.4398 -1.5480 21 7 1.4191 -8.5016 -0.8042 22 8 0.7610 -9.2480 -2.8904 23 6 0.5169 -10.4099 -3.6898 24 6 -0.6082 -11.2206 -3.0326 25 8 -0.1837 -11.5905 -1.7159 26 6 3.2127 -5.3409 1.4362 27 6 2.4220 -4.0339 1.4395 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9688 -3.5508 -0.5876 31 1 0.9027 -4.4723 -1.6244 32 1 0.2810 -4.8763 -0.0058 33 1 2.8131 -5.9754 -1.3117 34 1 1.3123 -6.8753 -0.9791 35 1 1.1818 -9.8789 2.2303 36 1 0.1289 -11.6841 0.8871 37 1 0.2149 -10.1088 -4.6929 38 1 1.4220 -11.0150 -3.7443 39 1 -1.5110 -10.6130 -2.9704 40 1 -0.8078 -12.1164 -3.6205 41 1 3.3857 -5.6643 2.4627 42 1 4.1676 -5.1857 0.9340 43 1 3.0273 -3.2422 1.8811 44 1 1.5108 -4.1643 2.0232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996767823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:14 Heat of formation + Delta-G solvation = -51.265626 kcal Electronic energy + Delta-G solvation = -28786.693148 eV Core-core repulsion = 24705.327848 eV Total energy + Delta-G solvation = -4081.365300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.73031 -41.39099 -39.55230 -38.68243 -38.47125 -36.20781 -34.08183 -33.38585 -32.61584 -31.89074 -31.06184 -29.86884 -26.95700 -26.25360 -25.47264 -24.36539 -24.04390 -22.85731 -21.80252 -20.75463 -19.67424 -19.15386 -19.12919 -18.74056 -17.82149 -17.16568 -16.91210 -16.70506 -16.32501 -16.10749 -15.62832 -15.62181 -15.49846 -15.36763 -15.33104 -14.93527 -14.76076 -14.54726 -14.22534 -14.00111 -13.73765 -13.43393 -13.08898 -12.80646 -12.76700 -12.60444 -12.33096 -12.22756 -12.17883 -12.06410 -11.95223 -11.67803 -11.45601 -11.44389 -10.89286 -10.70149 -9.95357 -9.77387 -9.39775 -9.00653 -7.93038 -5.22043 -0.56301 -0.01968 1.46669 1.47386 1.50500 1.54515 1.56391 1.86605 2.01856 2.56068 2.60025 2.88843 3.15911 3.39553 3.48012 3.69507 3.83908 3.90032 3.91578 4.00228 4.02829 4.15680 4.17392 4.22574 4.41310 4.43154 4.55492 4.57694 4.61261 4.62506 4.80054 4.81909 4.90006 4.97994 5.08917 5.09082 5.22105 5.30183 5.48756 5.51246 5.55451 5.66083 6.01178 6.28336 6.31039 6.54893 6.99332 7.34260 8.09580 8.33905 9.30495 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002693 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.145464 B =10394.189942 C =11444.089861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.173 3.827 11 C -0.128 4.128 12 C 0.089 3.911 13 N -0.587 5.587 14 C 0.569 3.431 15 O -0.566 6.566 16 C 0.066 3.934 17 C -0.098 4.098 18 C -0.071 4.071 19 C 0.040 3.960 20 C 0.247 3.753 21 N -0.451 5.451 22 O -0.312 6.312 23 C 0.017 3.983 24 C 0.012 3.988 25 O -0.303 6.303 26 C 0.118 3.882 27 C -0.136 4.136 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.188 0.812 37 H 0.162 0.838 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 -30.503 -7.371 31.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.065 3.935 11 C -0.167 4.167 12 C -0.033 4.033 13 N -0.317 5.317 14 C 0.357 3.643 15 O -0.446 6.446 16 C -0.070 4.070 17 C -0.119 4.119 18 C -0.097 4.097 19 C -0.010 4.010 20 C 0.064 3.936 21 N -0.175 5.175 22 O -0.222 6.222 23 C -0.058 4.058 24 C -0.062 4.062 25 O -0.215 6.215 26 C -0.005 4.005 27 C -0.177 4.177 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.168 0.832 35 H 0.186 0.814 36 H 0.206 0.794 37 H 0.179 0.821 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.184 0.816 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.663 -29.756 -7.287 30.643 hybrid contribution -0.413 0.897 0.285 1.028 sum 0.250 -28.859 -7.002 29.698 Atomic orbital electron populations 1.69822 1.06669 1.26036 1.59758 1.25569 0.96363 1.01105 1.03949 0.85216 0.77174 0.79210 0.78204 1.20259 1.22300 1.20486 1.19608 0.91456 0.85172 1.40772 0.90523 1.42652 1.05360 1.00999 1.88619 1.20431 0.94519 0.85001 0.93551 1.22113 0.98462 0.94943 1.01203 1.22981 1.00436 0.98583 0.81308 1.48097 1.52272 1.13851 1.17470 1.18030 0.78335 0.82210 0.85689 1.90748 1.55585 1.82005 1.16254 1.20628 1.02244 0.95927 0.88210 1.22031 0.95748 0.91122 1.03005 1.21244 0.98327 1.00989 0.89095 1.20043 0.98070 0.89835 0.93022 1.19718 0.97031 0.90837 0.86006 1.66642 1.16064 1.28446 1.06386 1.86250 1.87072 1.36253 1.12589 1.24200 0.99891 0.85796 0.95892 1.24142 0.96809 1.04440 0.80813 1.86266 1.73809 1.33322 1.28151 1.21580 0.94163 0.86522 0.98185 1.22345 0.99520 0.96072 0.99776 0.94108 0.79803 0.93373 0.90784 0.93400 0.90921 0.83234 0.81365 0.79442 0.82083 0.89164 0.89523 0.81589 0.89594 0.89793 0.91818 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.24 -13.50 9.93 84.03 0.83 -12.66 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -38.56 5.12 -322.80 -1.65 -40.21 16 10 C 0.17 7.18 2.73 45.02 0.12 7.30 16 11 C -0.13 -4.58 5.55 30.67 0.17 -4.41 16 12 C 0.09 2.72 5.88 86.36 0.51 3.23 16 13 N -0.59 -18.72 2.98 -823.10 -2.45 -21.17 16 14 C 0.57 18.11 7.64 86.80 0.66 18.77 16 15 O -0.57 -20.21 15.78 -3.90 -0.06 -20.27 16 16 C 0.07 1.73 6.57 41.79 0.27 2.00 16 17 C -0.10 -1.95 9.62 22.59 0.22 -1.74 16 18 C -0.07 -1.08 10.08 22.50 0.23 -0.85 16 19 C 0.04 0.68 6.51 22.79 0.15 0.83 16 20 C 0.25 5.34 7.55 85.03 0.64 5.98 16 21 N -0.45 -11.72 6.13 -297.44 -1.82 -13.54 16 22 O -0.31 -5.89 10.51 -81.40 -0.86 -6.74 16 23 C 0.02 0.13 7.24 72.13 0.52 0.65 16 24 C 0.01 0.07 7.27 72.13 0.52 0.59 16 25 O -0.30 -3.87 10.41 -79.10 -0.82 -4.70 16 26 C 0.12 3.81 6.42 86.22 0.55 4.36 16 27 C -0.14 -5.24 5.64 30.53 0.17 -5.06 16 28 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.37 20.96 7.80 -92.71 -0.72 20.23 16 30 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.15 4.47 4.02 -67.49 -0.27 4.19 16 35 H 0.17 3.00 7.66 -2.91 -0.02 2.97 16 36 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.17 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.09 2.80 7.00 -2.39 -0.02 2.78 16 42 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -75.96 359.16 0.74 -75.21 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.06 Total: 28.11 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 6.05 Total: 14.89 kcal Atomic # 7 Polarization: -129.88 SS G_CDS: -5.65 Total: -135.53 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.74 Total: -31.71 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -75.96 0.74 -75.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996767823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.947 kcal (2) G-P(sol) polarization free energy of solvation -75.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds