Wall clock time and date at job start Tue Mar 31 2020 17:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48496 * 109.46745 * 270.00040 * 3 2 1 5 5 H 1.48507 * 109.47167 * 29.99635 * 3 2 1 6 6 H 1.48499 * 109.47238 * 149.99947 * 3 2 1 7 7 C 1.38810 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00341 * 196.90938 * 7 2 1 9 9 N 1.36945 * 119.99621 * 16.91136 * 7 2 1 10 10 C 1.47155 * 120.97858 * 206.24617 * 9 7 2 11 11 C 1.53295 * 108.38299 * 230.51428 * 10 9 7 12 12 O 1.42951 * 109.26546 * 307.72335 * 11 10 9 13 13 C 1.42968 * 114.17059 * 62.49791 * 12 11 10 14 14 H 1.08996 * 109.50761 * 57.45522 * 13 12 11 15 15 C 1.53002 * 109.51291 * 177.55177 * 13 12 11 16 16 N 1.46498 * 109.46890 * 299.90201 * 15 13 12 17 17 C 1.34784 * 119.99630 * 179.97438 * 16 15 13 18 18 O 1.21545 * 120.00218 * 0.02562 * 17 16 15 19 19 C 1.47858 * 119.99818 * 179.97438 * 17 16 15 20 20 C 1.39703 * 120.07522 * 0.02562 * 19 17 16 21 21 C 1.38055 * 120.14787 * 179.97438 * 20 19 17 22 22 C 1.38106 * 120.29283 * 0.02562 * 21 20 19 23 23 C 1.39659 * 120.14633 * 359.97438 * 22 21 20 24 24 C 1.47857 * 120.07158 * 179.97438 * 23 22 21 25 25 N 1.34777 * 120.00354 * 0.02562 * 24 23 22 26 26 O 1.21558 * 119.99981 * 180.02562 * 24 23 22 27 27 C 1.39292 * 120.07333 * 179.97438 * 19 17 16 28 28 C 1.47141 * 120.98281 * 26.22442 * 9 7 2 29 29 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.68064 * 350.24005 * 10 9 7 31 31 H 1.08996 * 109.68109 * 110.75113 * 10 9 7 32 32 H 1.08998 * 109.51310 * 67.62358 * 11 10 9 33 33 H 1.09000 * 109.51275 * 187.77128 * 11 10 9 34 34 H 1.08997 * 109.47075 * 179.89858 * 15 13 12 35 35 H 1.09003 * 109.46794 * 59.89632 * 15 13 12 36 36 H 0.96997 * 120.00770 * 359.97438 * 16 15 13 37 37 H 1.08002 * 119.93169 * 0.02562 * 20 19 17 38 38 H 1.07996 * 119.85678 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.92157 * 179.97438 * 22 21 20 40 40 H 0.96997 * 119.99840 * 0.02562 * 25 24 23 41 41 H 0.97005 * 120.00031 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.15096 * 0.27951 * 27 19 17 43 43 H 1.08999 * 109.68470 * 9.76483 * 28 9 7 44 44 H 1.08995 * 109.71612 * 249.22555 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2222 0.2726 9 7 1.3700 -2.3626 -0.3439 10 6 1.8340 -3.6633 0.1642 11 6 1.9812 -4.6216 -1.0232 12 8 0.7655 -4.6309 -1.7753 13 6 0.4243 -3.3681 -2.3521 14 1 1.2370 -3.0300 -2.9948 15 6 -0.8549 -3.5128 -3.1790 16 7 -0.6377 -4.4920 -4.2469 17 6 -1.6342 -4.7841 -5.1061 18 8 -2.7128 -4.2348 -4.9953 19 6 -1.4149 -5.7719 -6.1843 20 6 -0.1757 -6.4037 -6.3134 21 6 0.0306 -7.3267 -7.3192 22 6 -0.9850 -7.6313 -8.2041 23 6 -2.2287 -7.0070 -8.0863 24 6 -3.3147 -7.3339 -9.0350 25 7 -3.1051 -8.2357 -10.0144 26 8 -4.3965 -6.7894 -8.9315 27 6 -2.4438 -6.0753 -7.0728 28 6 0.1974 -2.3456 -1.2327 29 1 -0.4850 0.8400 -0.0004 30 1 2.7974 -3.5415 0.6593 31 1 1.1062 -4.0623 0.8707 32 1 2.8002 -4.2884 -1.6606 33 1 2.1901 -5.6265 -0.6564 34 1 -1.1154 -2.5493 -3.6170 35 1 -1.6671 -3.8511 -2.5356 36 1 0.2231 -4.9301 -4.3356 37 1 0.6226 -6.1703 -5.6244 38 1 0.9906 -7.8120 -7.4149 39 1 -0.8170 -8.3540 -8.9890 40 1 -2.2420 -8.6705 -10.0968 41 1 -3.8175 -8.4499 -10.6370 42 1 -3.4027 -5.5870 -6.9797 43 1 0.0770 -1.3513 -1.6627 44 1 -0.6960 -2.6118 -0.6679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035419702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:05 Heat of formation + Delta-G solvation = -94.322923 kcal Electronic energy + Delta-G solvation = -27767.043252 eV Core-core repulsion = 23683.810847 eV Total energy + Delta-G solvation = -4083.232404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56666 -40.71172 -40.01568 -38.81446 -36.50753 -35.93568 -34.97283 -33.29660 -32.97887 -32.11720 -31.74001 -29.09037 -27.41962 -25.36356 -25.13562 -24.51959 -23.12623 -22.33809 -21.59893 -20.98620 -19.63176 -18.92568 -18.15638 -17.70362 -17.51945 -17.22710 -16.97719 -16.87314 -16.19350 -16.09663 -15.85063 -15.71922 -15.51712 -15.43182 -15.03562 -14.96115 -14.79525 -14.60068 -14.36367 -13.95307 -13.41343 -13.19166 -13.03730 -12.95911 -12.68764 -12.52883 -12.46903 -12.17599 -12.09054 -11.88481 -11.36951 -11.30614 -11.12675 -10.79577 -10.78556 -10.55940 -10.35953 -10.09755 -10.01358 -8.76538 -7.91857 -5.39641 -0.41395 -0.03718 1.46321 1.47600 1.51144 1.56728 1.95140 2.01542 2.45921 2.49111 2.77066 2.84080 3.22701 3.47752 3.56447 3.74237 3.81814 4.01676 4.03874 4.06018 4.10399 4.25593 4.35693 4.45524 4.50820 4.57123 4.59897 4.68526 4.81250 4.88296 4.96896 5.07532 5.13978 5.19709 5.23253 5.24834 5.27374 5.52423 5.59776 5.70376 5.84521 6.25776 6.32038 6.38820 6.44713 7.04559 7.09952 7.25536 7.73977 8.27310 9.13893 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.002219 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.400630 B =12612.493294 C =13240.823810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.264 4.264 8 H 0.076 0.924 9 N -0.613 5.613 10 C 0.100 3.900 11 C 0.058 3.942 12 O -0.389 6.389 13 C 0.079 3.921 14 H 0.070 0.930 15 C 0.141 3.859 16 N -0.698 5.698 17 C 0.549 3.451 18 O -0.587 6.587 19 C -0.155 4.155 20 C -0.051 4.051 21 C -0.118 4.118 22 C -0.041 4.041 23 C -0.160 4.160 24 C 0.559 3.441 25 N -0.822 5.822 26 O -0.594 6.594 27 C -0.028 4.028 28 C 0.158 3.842 29 H 0.251 0.749 30 H 0.073 0.927 31 H 0.013 0.987 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.417 0.583 37 H 0.156 0.844 38 H 0.184 0.816 39 H 0.180 0.820 40 H 0.420 0.580 41 H 0.414 0.586 42 H 0.109 0.891 43 H 0.066 0.934 44 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 -22.029 -20.330 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.189 1.189 7 C -0.393 4.393 8 H 0.094 0.906 9 N -0.338 5.338 10 C -0.025 4.025 11 C -0.020 4.020 12 O -0.308 6.308 13 C 0.019 3.981 14 H 0.088 0.912 15 C 0.017 3.983 16 N -0.350 5.350 17 C 0.338 3.662 18 O -0.468 6.468 19 C -0.158 4.158 20 C -0.070 4.070 21 C -0.136 4.136 22 C -0.060 4.060 23 C -0.164 4.164 24 C 0.346 3.654 25 N -0.387 5.387 26 O -0.475 6.475 27 C -0.048 4.048 28 C 0.031 3.969 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.255 0.745 37 H 0.174 0.826 38 H 0.201 0.799 39 H 0.197 0.803 40 H 0.254 0.746 41 H 0.247 0.753 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 5.076 -21.250 -20.019 29.633 hybrid contribution 0.071 1.374 0.463 1.452 sum 5.147 -19.876 -19.556 28.355 Atomic orbital electron populations 1.70189 1.06811 1.26062 1.55227 1.25870 0.96065 1.01782 1.01116 0.85214 0.78085 0.79174 0.77658 1.20994 1.22540 1.18931 1.19572 0.93090 0.85459 1.41227 0.90599 1.44349 1.33610 1.02489 1.53350 1.21855 0.98551 0.86470 0.95653 1.23096 0.85809 1.00717 0.92365 1.87792 1.43222 1.30417 1.69386 1.22722 0.95683 0.85540 0.94143 0.91240 1.21148 0.96644 0.92669 0.87861 1.45629 1.15979 1.43400 1.29993 1.18761 0.83494 0.81961 0.82000 1.90778 1.26974 1.54560 1.74530 1.19736 0.96929 1.01212 0.97904 1.21920 0.94401 0.93103 0.97574 1.21599 1.01267 0.97192 0.93511 1.21988 0.89724 0.95998 0.98259 1.19841 0.96263 1.01931 0.98320 1.18437 0.86650 0.79002 0.81332 1.43490 1.20103 1.43175 1.31977 1.90841 1.28070 1.54189 1.74423 1.21223 0.98138 0.93777 0.91688 1.21084 0.88304 0.97565 0.89948 0.94012 0.90823 0.96858 0.92371 0.85910 0.90640 0.92384 0.74487 0.82615 0.79892 0.80273 0.74648 0.75336 0.87239 0.91527 0.98396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.61 11.14 21.65 0.24 -55.37 16 2 C -0.05 -2.92 4.95 84.86 0.42 -2.50 16 3 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.26 -14.11 9.65 84.03 0.81 -13.30 16 8 H 0.08 3.88 7.88 -2.91 -0.02 3.85 16 9 N -0.61 -30.20 3.05 -697.57 -2.13 -32.33 16 10 C 0.10 3.92 6.74 86.35 0.58 4.50 16 11 C 0.06 1.72 6.98 72.08 0.50 2.22 16 12 O -0.39 -13.02 10.14 -148.98 -1.51 -14.53 16 13 C 0.08 2.87 2.86 30.69 0.09 2.95 16 14 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 15 C 0.14 4.92 5.37 86.38 0.46 5.38 16 16 N -0.70 -19.53 5.40 -465.96 -2.52 -22.05 16 17 C 0.55 17.34 7.77 86.79 0.67 18.01 16 18 O -0.59 -24.42 16.34 -3.86 -0.06 -24.48 16 19 C -0.15 -3.65 5.87 -20.12 -0.12 -3.77 16 20 C -0.05 -0.68 9.54 22.58 0.22 -0.47 16 21 C -0.12 -0.78 10.02 22.19 0.22 -0.56 16 22 C -0.04 -0.30 9.54 22.58 0.22 -0.08 16 23 C -0.16 -2.83 5.87 -20.12 -0.12 -2.95 16 24 C 0.56 10.84 8.05 86.79 0.70 11.54 16 25 N -0.82 -5.95 8.82 -175.59 -1.55 -7.50 16 26 O -0.59 -18.43 17.18 -3.90 -0.07 -18.50 16 27 C -0.03 -0.72 9.14 22.79 0.21 -0.52 16 28 C 0.16 7.59 4.73 86.36 0.41 8.00 16 29 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.42 8.73 6.38 -92.71 -0.59 8.14 16 37 H 0.16 1.35 6.39 -2.91 -0.02 1.34 16 38 H 0.18 -0.30 8.06 -2.91 -0.02 -0.33 16 39 H 0.18 -0.52 6.39 -2.91 -0.02 -0.54 16 40 H 0.42 -0.53 6.85 -92.71 -0.64 -1.16 16 41 H 0.41 2.25 8.93 -92.70 -0.83 1.43 16 42 H 0.11 3.66 7.23 -2.91 -0.02 3.64 16 43 H 0.07 3.59 6.14 -2.39 -0.01 3.58 16 44 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -86.12 367.55 -1.27 -87.39 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -0.98 Total: 12.68 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 5.27 Total: 28.47 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -5.95 Total: -117.25 kcal Atomic # 8 Polarization: -55.86 SS G_CDS: -1.64 Total: -57.50 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -86.12 -1.27 -87.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035419702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.935 kcal (2) G-P(sol) polarization free energy of solvation -86.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds