Wall clock time and date at job start Tue Mar 31 2020 19:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47202 * 300.00420 * 3 2 1 6 6 H 1.48510 * 109.46906 * 60.00216 * 3 2 1 7 7 C 1.38816 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00538 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99545 * 0.02562 * 7 2 1 10 10 C 1.48154 * 126.40163 * 0.03252 * 9 7 2 11 11 C 1.56176 * 107.35080 * 174.35753 * 10 9 7 12 12 C 1.53700 * 101.41312 * 338.54614 * 11 10 9 13 13 H 1.08993 * 111.10833 * 280.18502 * 12 11 10 14 14 C 1.51980 * 115.00536 * 153.00943 * 12 11 10 15 15 C 1.53891 * 107.28962 * 183.73793 * 14 12 11 16 16 N 1.46603 * 110.70849 * 51.81499 * 15 14 12 17 17 C 1.34768 * 119.75318 * 131.97317 * 16 15 14 18 18 O 1.21595 * 120.00087 * 176.42471 * 17 16 15 19 19 C 1.47491 * 120.00025 * 356.42119 * 17 16 15 20 20 C 1.37815 * 126.77052 * 41.37921 * 19 17 16 21 21 O 1.33498 * 108.33894 * 179.86470 * 20 19 17 22 22 C 1.34891 * 109.89014 * 0.40347 * 21 20 19 23 23 C 1.46768 * 125.65475 * 179.76327 * 22 21 20 24 24 N 1.34782 * 120.00128 * 359.97438 * 23 22 21 25 25 O 1.21684 * 120.00240 * 179.97438 * 23 22 21 26 26 C 1.36057 * 108.68677 * 359.75170 * 22 21 20 27 27 C 1.47795 * 120.49283 * 312.25026 * 16 15 14 28 28 C 1.45508 * 126.39350 * 180.02562 * 9 7 2 29 29 H 1.08996 * 109.57148 * 93.40758 * 28 9 7 30 30 H 0.97001 * 120.00036 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.92198 * 294.31935 * 10 9 7 32 32 H 1.09005 * 109.91524 * 55.41519 * 10 9 7 33 33 H 1.08996 * 111.54244 * 220.37670 * 11 10 9 34 34 H 1.08998 * 110.75097 * 96.36883 * 11 10 9 35 35 H 1.08995 * 109.89292 * 64.29326 * 14 12 11 36 36 H 1.09003 * 109.95268 * 303.21735 * 14 12 11 37 37 H 1.08993 * 109.23109 * 291.49940 * 15 14 12 38 38 H 1.08995 * 109.19353 * 172.10891 * 15 14 12 39 39 H 1.07997 * 125.82941 * 359.97438 * 20 19 17 40 40 H 0.96996 * 119.99928 * 359.97438 * 24 23 22 41 41 H 0.97004 * 119.99944 * 179.97438 * 24 23 22 42 42 H 1.08005 * 126.68041 * 179.97438 * 26 22 21 43 43 H 1.08999 * 110.06358 * 170.47525 * 27 16 15 44 44 H 1.09003 * 110.06548 * 292.04047 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5532 -0.0007 11 6 -0.4442 -4.0794 -0.1467 12 6 0.8688 -4.5875 -0.7633 13 1 0.9013 -4.3904 -1.8348 14 6 1.1978 -6.0412 -0.4663 15 6 2.5783 -6.3325 -1.0808 16 7 3.5608 -5.3358 -0.6444 17 6 4.7613 -5.7377 -0.1823 18 8 5.6034 -4.9142 0.1196 19 6 5.0536 -7.1766 -0.0427 20 6 4.7180 -8.1765 -0.9298 21 8 5.1625 -9.3371 -0.4423 22 6 5.7729 -9.1333 0.7432 23 6 6.3828 -10.1724 1.5813 24 7 6.3602 -11.4595 1.1820 25 8 6.9088 -9.8719 2.6366 26 6 5.7298 -7.8046 1.0330 27 6 3.2423 -3.8937 -0.7017 28 6 1.9081 -3.7214 0.0016 29 1 1.9976 -4.0800 1.0270 30 1 -0.4850 0.8401 0.0004 31 1 -0.5638 -2.1747 0.9326 32 1 -0.5799 -2.0169 -0.8451 33 1 -1.2852 -4.2610 -0.8159 34 1 -0.6185 -4.5339 0.8285 35 1 0.4471 -6.6908 -0.9161 36 1 1.2300 -6.2025 0.6113 37 1 2.5000 -6.3074 -2.1676 38 1 2.9082 -7.3229 -0.7675 39 1 4.1877 -8.0436 -1.8611 40 1 5.9406 -11.6991 0.3410 41 1 6.7636 -12.1463 1.7358 42 1 6.1320 -7.3226 1.9118 43 1 4.0129 -3.3198 -0.1870 44 1 3.1631 -3.5691 -1.7393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042156163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:06 Heat of formation + Delta-G solvation = -15.568488 kcal Electronic energy + Delta-G solvation = -28892.901334 eV Core-core repulsion = 24813.083978 eV Total energy + Delta-G solvation = -4079.817356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.21135 -40.13654 -39.54093 -38.18324 -35.47576 -34.32138 -33.45688 -32.92193 -31.38312 -30.67828 -29.20206 -28.44197 -25.09765 -24.51789 -24.15948 -22.52009 -22.30759 -21.12271 -20.24157 -19.83847 -19.41940 -18.32604 -17.37520 -17.06011 -16.86049 -16.59997 -16.12024 -15.61306 -15.12571 -14.77601 -14.74682 -14.60201 -14.33980 -14.01267 -13.64911 -13.50050 -13.35841 -13.15369 -12.88720 -12.56216 -12.28283 -11.92977 -11.59521 -11.35030 -10.98868 -10.90272 -10.83761 -10.77640 -10.40022 -10.26070 -10.13775 -9.99767 -9.91509 -9.88743 -9.66660 -9.53105 -9.05025 -8.64628 -8.51915 -6.87299 -5.73062 -3.07030 0.57344 1.45463 2.15662 2.67320 2.78446 3.08954 3.19966 3.41144 3.48053 3.50344 4.17407 4.27674 4.49858 4.53279 4.76976 4.90757 4.94607 5.11677 5.19469 5.33337 5.36308 5.38926 5.57513 5.61631 5.72561 5.78571 5.87177 5.97025 6.03097 6.07185 6.11913 6.13223 6.30986 6.32823 6.43416 6.51960 6.65935 6.70058 6.80871 7.01554 7.44863 7.54244 7.59213 7.66198 7.80409 8.19369 8.22778 9.17952 9.80760 10.46908 11.39217 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002790 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.896560 B =10033.284838 C =10837.946816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.112 4.112 13 H 0.077 0.923 14 C -0.120 4.120 15 C 0.095 3.905 16 N -0.598 5.598 17 C 0.580 3.420 18 O -0.528 6.528 19 C -0.223 4.223 20 C 0.037 3.963 21 O -0.155 6.155 22 C -0.093 4.093 23 C 0.613 3.387 24 N -0.844 5.844 25 O -0.518 6.518 26 C -0.063 4.063 27 C 0.118 3.882 28 C 0.156 3.844 29 H 0.024 0.976 30 H 0.252 0.748 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.225 0.775 40 H 0.407 0.593 41 H 0.410 0.590 42 H 0.170 0.830 43 H 0.094 0.906 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -24.671 -4.622 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.132 4.132 13 H 0.095 0.905 14 C -0.158 4.158 15 C -0.028 4.028 16 N -0.331 5.331 17 C 0.367 3.633 18 O -0.405 6.405 19 C -0.227 4.227 20 C -0.036 4.036 21 O -0.049 6.049 22 C -0.144 4.144 23 C 0.397 3.603 24 N -0.408 5.408 25 O -0.395 6.395 26 C -0.084 4.084 27 C -0.004 4.004 28 C 0.047 3.953 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.241 0.759 40 H 0.236 0.764 41 H 0.242 0.758 42 H 0.187 0.813 43 H 0.112 0.888 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.608 -23.883 -3.927 24.844 hybrid contribution 0.192 0.669 -0.248 0.739 sum 5.800 -23.213 -4.175 24.288 Atomic orbital electron populations 1.69950 1.04906 1.24993 1.57027 1.24787 0.95689 0.97686 1.02096 0.86069 0.78958 0.83749 0.77213 1.20319 1.21761 1.21742 1.19098 0.90479 0.82199 1.43835 0.90154 1.44163 1.01636 0.99161 1.86691 1.21691 0.83609 0.88385 1.01024 1.22859 0.95809 0.99707 0.99296 1.22270 0.97396 0.93304 1.00237 0.90476 1.21809 0.95031 0.97617 1.01391 1.22084 0.89769 0.91794 0.99143 1.48168 1.13692 1.08173 1.63086 1.17304 0.82287 0.86204 0.77541 1.90826 1.46065 1.53774 1.49832 1.20784 1.08117 0.95254 0.98565 1.25247 0.97578 0.81137 0.99597 1.83892 1.56711 1.33596 1.30721 1.21751 1.08483 0.95689 0.88500 1.16475 0.78320 0.81593 0.83892 1.43665 1.61978 1.08106 1.27016 1.90965 1.44878 1.81449 1.22225 1.21895 0.96065 0.91214 0.99206 1.21805 0.99251 0.77659 1.01704 1.21002 0.90915 0.87715 0.95680 0.95836 0.93792 0.94338 0.92656 0.92101 0.92581 0.90762 0.91308 0.91290 0.89985 0.75892 0.76394 0.75849 0.81262 0.88804 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.43 55.49 0.58 -26.22 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.26 9.88 -15.06 -0.15 -6.41 16 8 H 0.08 2.17 7.41 -52.49 -0.39 1.78 16 9 N -0.59 -14.67 3.35 -162.31 -0.54 -15.21 16 10 C 0.18 4.17 5.47 -1.43 -0.01 4.16 16 11 C -0.14 -2.42 6.63 -24.66 -0.16 -2.58 16 12 C -0.11 -1.80 2.57 -89.49 -0.23 -2.03 16 13 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 14 C -0.12 -1.41 5.72 -26.79 -0.15 -1.57 16 15 C 0.09 0.99 5.37 -3.52 -0.02 0.97 16 16 N -0.60 -8.77 3.01 -173.97 -0.52 -9.29 16 17 C 0.58 9.10 7.59 -12.49 -0.09 9.00 16 18 O -0.53 -10.59 16.49 5.28 0.09 -10.50 16 19 C -0.22 -2.66 5.36 -104.95 -0.56 -3.23 16 20 C 0.04 0.29 9.68 30.58 0.30 0.58 16 21 O -0.15 -1.21 10.33 6.17 0.06 -1.15 16 22 C -0.09 -0.93 7.09 -36.92 -0.26 -1.19 16 23 C 0.61 5.99 8.06 -12.81 -0.10 5.89 16 24 N -0.84 -4.33 8.87 30.28 0.27 -4.06 16 25 O -0.52 -7.08 17.68 5.20 0.09 -6.99 16 26 C -0.06 -0.76 10.58 -39.03 -0.41 -1.18 16 27 C 0.12 2.17 5.67 -3.94 -0.02 2.14 16 28 C 0.16 3.12 2.78 -67.79 -0.19 2.93 16 29 H 0.02 0.52 7.93 -51.93 -0.41 0.11 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 32 H 0.06 1.44 7.19 -51.93 -0.37 1.06 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.65 4.25 -51.93 -0.22 0.43 16 39 H 0.22 0.91 6.95 -52.49 -0.36 0.55 16 40 H 0.41 1.11 8.57 -40.82 -0.35 0.76 16 41 H 0.41 1.44 8.93 -40.82 -0.36 1.07 16 42 H 0.17 2.17 8.06 -52.48 -0.42 1.74 16 43 H 0.09 1.98 6.78 -51.93 -0.35 1.63 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -35.62 357.94 -7.51 -43.13 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.74 Total: 0.42 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -2.17 Total: 7.22 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.22 Total: -54.78 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.24 Total: -18.63 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.62 -7.51 -43.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042156163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.560 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds