Wall clock time and date at job start Tue Mar 31 2020 19:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47202 * 300.00420 * 3 2 1 6 6 H 1.48510 * 109.46906 * 60.00216 * 3 2 1 7 7 C 1.38816 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00538 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99545 * 0.02562 * 7 2 1 10 10 C 1.48154 * 126.40163 * 0.03252 * 9 7 2 11 11 C 1.56176 * 107.35080 * 174.35753 * 10 9 7 12 12 C 1.53700 * 101.41312 * 338.54614 * 11 10 9 13 13 H 1.08993 * 111.10833 * 280.18502 * 12 11 10 14 14 C 1.51980 * 115.00536 * 153.00943 * 12 11 10 15 15 C 1.53891 * 107.28962 * 183.73793 * 14 12 11 16 16 N 1.46603 * 110.70849 * 51.81499 * 15 14 12 17 17 C 1.34768 * 119.75318 * 131.97317 * 16 15 14 18 18 O 1.21595 * 120.00087 * 176.42471 * 17 16 15 19 19 C 1.47491 * 120.00025 * 356.42119 * 17 16 15 20 20 C 1.37815 * 126.77052 * 41.37921 * 19 17 16 21 21 O 1.33498 * 108.33894 * 179.86470 * 20 19 17 22 22 C 1.34891 * 109.89014 * 0.40347 * 21 20 19 23 23 C 1.46768 * 125.65475 * 179.76327 * 22 21 20 24 24 N 1.34782 * 120.00128 * 359.97438 * 23 22 21 25 25 O 1.21684 * 120.00240 * 179.97438 * 23 22 21 26 26 C 1.36057 * 108.68677 * 359.75170 * 22 21 20 27 27 C 1.47795 * 120.49283 * 312.25026 * 16 15 14 28 28 C 1.45508 * 126.39350 * 180.02562 * 9 7 2 29 29 H 1.08996 * 109.57148 * 93.40758 * 28 9 7 30 30 H 0.97001 * 120.00036 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.92198 * 294.31935 * 10 9 7 32 32 H 1.09005 * 109.91524 * 55.41519 * 10 9 7 33 33 H 1.08996 * 111.54244 * 220.37670 * 11 10 9 34 34 H 1.08998 * 110.75097 * 96.36883 * 11 10 9 35 35 H 1.08995 * 109.89292 * 64.29326 * 14 12 11 36 36 H 1.09003 * 109.95268 * 303.21735 * 14 12 11 37 37 H 1.08993 * 109.23109 * 291.49940 * 15 14 12 38 38 H 1.08995 * 109.19353 * 172.10891 * 15 14 12 39 39 H 1.07997 * 125.82941 * 359.97438 * 20 19 17 40 40 H 0.96996 * 119.99928 * 359.97438 * 24 23 22 41 41 H 0.97004 * 119.99944 * 179.97438 * 24 23 22 42 42 H 1.08005 * 126.68041 * 179.97438 * 26 22 21 43 43 H 1.08999 * 110.06358 * 170.47525 * 27 16 15 44 44 H 1.09003 * 110.06548 * 292.04047 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5532 -0.0007 11 6 -0.4442 -4.0794 -0.1467 12 6 0.8688 -4.5875 -0.7633 13 1 0.9013 -4.3904 -1.8348 14 6 1.1978 -6.0412 -0.4663 15 6 2.5783 -6.3325 -1.0808 16 7 3.5608 -5.3358 -0.6444 17 6 4.7613 -5.7377 -0.1823 18 8 5.6034 -4.9142 0.1196 19 6 5.0536 -7.1766 -0.0427 20 6 4.7180 -8.1765 -0.9298 21 8 5.1625 -9.3371 -0.4423 22 6 5.7729 -9.1333 0.7432 23 6 6.3828 -10.1724 1.5813 24 7 6.3602 -11.4595 1.1820 25 8 6.9088 -9.8719 2.6366 26 6 5.7298 -7.8046 1.0330 27 6 3.2423 -3.8937 -0.7017 28 6 1.9081 -3.7214 0.0016 29 1 1.9976 -4.0800 1.0270 30 1 -0.4850 0.8401 0.0004 31 1 -0.5638 -2.1747 0.9326 32 1 -0.5799 -2.0169 -0.8451 33 1 -1.2852 -4.2610 -0.8159 34 1 -0.6185 -4.5339 0.8285 35 1 0.4471 -6.6908 -0.9161 36 1 1.2300 -6.2025 0.6113 37 1 2.5000 -6.3074 -2.1676 38 1 2.9082 -7.3229 -0.7675 39 1 4.1877 -8.0436 -1.8611 40 1 5.9406 -11.6991 0.3410 41 1 6.7636 -12.1463 1.7358 42 1 6.1320 -7.3226 1.9118 43 1 4.0129 -3.3198 -0.1870 44 1 3.1631 -3.5691 -1.7393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042156163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:02 Heat of formation + Delta-G solvation = -44.046103 kcal Electronic energy + Delta-G solvation = -28894.136216 eV Core-core repulsion = 24813.083978 eV Total energy + Delta-G solvation = -4081.052238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -43.98467 -41.39496 -40.33080 -39.61727 -36.91570 -35.03814 -34.69450 -34.25091 -32.91104 -31.75664 -30.57587 -29.96136 -26.62558 -26.09188 -24.96541 -23.69816 -23.48354 -21.98385 -21.82553 -21.17989 -20.46275 -19.26983 -18.59163 -18.04106 -17.88476 -17.53655 -17.26702 -16.77274 -16.69848 -16.25949 -15.81681 -15.66695 -15.52255 -15.39408 -14.99881 -14.74484 -14.41861 -14.33223 -14.14615 -13.83257 -13.59434 -13.50327 -13.13231 -13.07978 -12.78493 -12.51386 -12.10983 -11.99236 -11.79590 -11.74551 -11.53275 -11.37074 -11.35503 -11.07428 -11.01998 -10.86329 -10.75107 -9.84538 -9.73852 -8.92182 -7.88233 -5.22967 -0.15957 0.53295 1.40885 1.42148 1.43258 1.53513 1.60923 1.91856 2.09394 2.46104 2.49979 3.27625 3.30165 3.50631 3.63157 3.74243 3.82512 3.95219 3.97950 4.17560 4.25492 4.29237 4.31418 4.39010 4.54639 4.62734 4.68432 4.71920 4.83077 4.85829 4.92337 4.93888 5.12673 5.16353 5.25136 5.36799 5.44252 5.49515 5.60189 5.66710 5.74868 5.78423 6.18094 6.27340 6.32394 7.02025 7.07049 7.10066 7.75245 8.41722 9.22681 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002790 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.896560 B =10033.284838 C =10837.946816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.179 3.821 11 C -0.122 4.122 12 C -0.094 4.094 13 H 0.083 0.917 14 C -0.113 4.113 15 C 0.087 3.913 16 N -0.594 5.594 17 C 0.578 3.422 18 O -0.589 6.589 19 C -0.256 4.256 20 C 0.086 3.914 21 O -0.132 6.132 22 C -0.084 4.084 23 C 0.611 3.389 24 N -0.815 5.815 25 O -0.567 6.567 26 C -0.090 4.090 27 C 0.130 3.870 28 C 0.146 3.854 29 H 0.002 0.998 30 H 0.247 0.753 31 H -0.003 1.003 32 H 0.024 0.976 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.276 0.724 40 H 0.423 0.577 41 H 0.421 0.579 42 H 0.146 0.854 43 H 0.052 0.948 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -28.984 -7.223 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.054 3.946 11 C -0.160 4.160 12 C -0.114 4.114 13 H 0.101 0.899 14 C -0.151 4.151 15 C -0.033 4.033 16 N -0.325 5.325 17 C 0.367 3.633 18 O -0.470 6.470 19 C -0.260 4.260 20 C 0.014 3.986 21 O -0.024 6.024 22 C -0.136 4.136 23 C 0.395 3.605 24 N -0.379 5.379 25 O -0.448 6.448 26 C -0.111 4.111 27 C 0.007 3.993 28 C 0.038 3.962 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.015 0.985 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.291 0.709 40 H 0.255 0.745 41 H 0.254 0.746 42 H 0.164 0.836 43 H 0.071 0.929 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.916 -28.316 -6.570 29.481 hybrid contribution 0.400 1.953 0.572 2.074 sum 5.317 -26.363 -5.999 27.555 Atomic orbital electron populations 1.70149 1.06024 1.25173 1.58313 1.25538 0.96566 1.00646 1.02727 0.85128 0.78046 0.80007 0.76923 1.19699 1.21302 1.21999 1.19335 0.90567 0.83794 1.42760 0.90791 1.44426 1.02598 1.00315 1.86453 1.21524 0.82773 0.92735 0.97555 1.22735 0.97766 0.94581 1.00904 1.22211 0.94167 0.95439 0.99583 0.89873 1.21828 0.97013 0.94707 1.01525 1.22541 0.87748 0.91745 1.01290 1.48192 1.14470 1.07140 1.62742 1.17835 0.81748 0.87499 0.76216 1.90791 1.48067 1.55795 1.52362 1.20406 1.11336 0.93707 1.00588 1.26016 0.94229 0.79366 0.99035 1.83953 1.55779 1.33233 1.29449 1.21551 1.08303 0.94741 0.88990 1.16509 0.78023 0.82718 0.83259 1.43466 1.60419 1.06601 1.27433 1.90950 1.47193 1.82330 1.24315 1.21820 0.97392 0.92583 0.99336 1.21346 0.96959 0.80257 1.00762 1.21160 0.93324 0.86292 0.95440 0.98029 0.94337 0.98479 0.95798 0.89134 0.91525 0.86140 0.92264 0.87542 0.86653 0.70874 0.74500 0.74576 0.83647 0.92888 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.61 10.43 21.65 0.23 -57.38 16 2 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 3 Si 0.97 47.51 29.55 68.60 2.03 49.53 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.24 -13.56 9.88 84.03 0.83 -12.73 16 8 H 0.07 4.23 7.41 -2.91 -0.02 4.21 16 9 N -0.61 -31.67 3.35 -667.43 -2.23 -33.91 16 10 C 0.18 8.71 5.47 87.16 0.48 9.19 16 11 C -0.12 -4.05 6.63 31.93 0.21 -3.83 16 12 C -0.09 -2.78 2.57 -10.06 -0.03 -2.80 16 13 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 14 C -0.11 -2.08 5.72 30.56 0.17 -1.91 16 15 C 0.09 1.34 5.37 86.66 0.47 1.81 16 16 N -0.59 -16.48 3.01 -822.58 -2.48 -18.96 16 17 C 0.58 18.02 7.59 86.68 0.66 18.68 16 18 O -0.59 -25.05 16.49 -4.01 -0.07 -25.11 16 19 C -0.26 -5.61 5.36 -20.08 -0.11 -5.72 16 20 C 0.09 0.89 9.68 67.72 0.66 1.54 16 21 O -0.13 -1.39 10.33 -0.84 -0.01 -1.40 16 22 C -0.08 -1.50 7.09 23.99 0.17 -1.33 16 23 C 0.61 10.94 8.06 86.47 0.70 11.64 16 24 N -0.81 -5.84 8.87 -176.32 -1.56 -7.40 16 25 O -0.57 -15.56 17.68 -4.30 -0.08 -15.64 16 26 C -0.09 -2.17 10.58 22.62 0.24 -1.93 16 27 C 0.13 4.90 5.67 85.74 0.49 5.38 16 28 C 0.15 5.92 2.78 45.61 0.13 6.05 16 29 H 0.00 0.10 7.93 -2.39 -0.02 0.08 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.00 -0.17 7.77 -2.39 -0.02 -0.19 16 32 H 0.02 1.29 7.19 -2.38 -0.02 1.27 16 33 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.27 7.99 -2.39 -0.02 1.25 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.12 1.04 4.25 -2.39 -0.01 1.03 16 39 H 0.28 -0.07 6.95 -2.91 -0.02 -0.09 16 40 H 0.42 0.49 8.57 -92.71 -0.79 -0.31 16 41 H 0.42 1.76 8.93 -92.70 -0.83 0.93 16 42 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.05 2.41 6.78 -2.39 -0.02 2.39 16 44 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -88.59 357.94 0.80 -87.79 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -0.55 Total: 1.56 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 5.52 Total: 20.92 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -6.05 Total: -117.65 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -0.15 Total: -42.15 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.53 kcal Total: -88.59 0.80 -87.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042156163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.749 kcal (2) G-P(sol) polarization free energy of solvation -88.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds