Wall clock time and date at job start Tue Mar 31 2020 19:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00014 * 2 1 4 4 H 1.48505 * 109.46704 * 264.97831 * 3 2 1 5 5 H 1.48498 * 109.47116 * 24.97320 * 3 2 1 6 6 H 1.48491 * 109.47010 * 144.97867 * 3 2 1 7 7 C 1.38816 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99687 * 188.50737 * 7 2 1 9 9 N 1.36940 * 119.99997 * 8.50465 * 7 2 1 10 10 C 1.47127 * 125.76595 * 5.36686 * 9 7 2 11 11 C 1.54557 * 107.27637 * 182.58696 * 10 9 7 12 12 C 1.54419 * 102.38606 * 21.72165 * 11 10 9 13 13 H 1.09003 * 110.00561 * 81.02713 * 12 11 10 14 14 C 1.48210 * 125.76538 * 185.40074 * 9 7 2 15 15 H 1.08993 * 112.30522 * 33.42513 * 14 9 7 16 16 C 1.53005 * 107.11491 * 270.82203 * 14 9 7 17 17 C 1.52743 * 110.76558 * 191.90411 * 16 14 9 18 18 C 1.53461 * 108.43680 * 63.79534 * 17 16 14 19 19 N 1.45129 * 111.60917 * 203.37174 * 12 11 10 20 20 C 1.34771 * 119.57490 * 248.68136 * 19 12 11 21 21 O 1.21606 * 120.00204 * 352.27125 * 20 19 12 22 22 C 1.47295 * 119.99878 * 172.27537 * 20 19 12 23 23 C 1.36565 * 125.80764 * 172.36337 * 22 20 19 24 24 C 1.40056 * 106.92863 * 179.84634 * 23 22 20 25 25 C 1.36576 * 106.92340 * 0.41312 * 24 23 22 26 26 C 1.47287 * 125.80528 * 179.77958 * 25 24 23 27 27 N 1.34775 * 120.00202 * 179.97438 * 26 25 24 28 28 O 1.21619 * 120.00187 * 359.97438 * 26 25 24 29 29 O 1.34549 * 125.80164 * 352.66954 * 22 20 19 30 30 H 0.96998 * 120.00193 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88101 * 302.04197 * 10 9 7 32 32 H 1.08996 * 109.88468 * 63.05725 * 10 9 7 33 33 H 1.08999 * 110.88607 * 263.48158 * 11 10 9 34 34 H 1.09005 * 110.79971 * 139.91799 * 11 10 9 35 35 H 1.09004 * 109.20736 * 71.58973 * 16 14 9 36 36 H 1.09003 * 109.21638 * 312.22840 * 16 14 9 37 37 H 1.09005 * 109.63797 * 183.48267 * 17 16 14 38 38 H 1.09001 * 109.64054 * 303.89598 * 17 16 14 39 39 H 1.09003 * 109.83029 * 61.45137 * 18 17 16 40 40 H 1.09001 * 109.82954 * 182.32971 * 18 17 16 41 41 H 1.08007 * 126.53588 * 359.97438 * 23 22 20 42 42 H 1.08002 * 126.54052 * 180.11364 * 24 23 22 43 43 H 0.97001 * 119.99744 * 359.97438 * 27 26 25 44 44 H 0.97004 * 120.00138 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6038 1.9851 -1.3948 5 1 1.3986 2.6810 0.5911 6 1 3.4906 1.4731 0.8034 7 6 2.0103 -1.2022 0.0005 8 1 3.0813 -1.2072 0.1389 9 7 1.3369 -2.3817 -0.1743 10 6 -0.0954 -2.5166 -0.4827 11 6 -0.4158 -4.0281 -0.5232 12 6 0.7352 -4.6331 0.3097 13 1 0.5163 -4.5374 1.3732 14 6 1.9275 -3.7380 -0.0842 15 1 2.7282 -3.7923 0.6533 16 6 2.4307 -4.1038 -1.4821 17 6 2.7878 -5.5869 -1.5581 18 6 1.5096 -6.4061 -1.3343 19 7 0.9627 -6.0266 -0.0260 20 6 0.6675 -6.9845 0.8749 21 8 0.3478 -6.6767 2.0071 22 6 0.7321 -8.4043 0.4881 23 6 0.6030 -9.4693 1.3332 24 6 0.7248 -10.6260 0.5530 25 6 0.9324 -10.2178 -0.7336 26 6 1.1213 -11.1001 -1.8978 27 7 1.3181 -10.5692 -3.1208 28 8 1.0998 -12.3077 -1.7554 29 8 0.9343 -8.8725 -0.7570 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6888 -2.0320 0.2926 32 1 -0.3104 -2.0644 -1.4509 33 1 -0.3921 -4.4031 -1.5464 34 1 -1.3798 -4.2320 -0.0571 35 1 3.3152 -3.5096 -1.7117 36 1 1.6519 -3.8844 -2.2125 37 1 3.2014 -5.8142 -2.5407 38 1 3.5205 -5.8273 -0.7878 39 1 0.7850 -6.1820 -2.1172 40 1 1.7460 -7.4701 -1.3429 41 1 0.4363 -9.4275 2.3995 42 1 0.6702 -11.6464 0.9029 43 1 1.3349 -9.6060 -3.2345 44 1 1.4429 -11.1503 -3.8875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049582557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:06 Heat of formation + Delta-G solvation = -11.856774 kcal Electronic energy + Delta-G solvation = -29400.245440 eV Core-core repulsion = 25320.589036 eV Total energy + Delta-G solvation = -4079.656404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -43.21923 -40.36230 -39.57235 -38.10815 -35.48295 -34.35092 -33.43095 -32.56127 -32.33816 -30.57915 -29.06004 -28.32827 -25.72618 -24.38979 -24.09260 -22.56851 -22.01917 -21.23262 -20.63400 -20.11038 -18.97768 -18.33452 -17.60576 -17.28682 -17.02718 -16.91867 -16.10068 -15.17836 -15.03599 -14.83763 -14.65445 -14.40616 -14.25903 -14.09224 -13.59551 -13.54222 -13.41628 -13.18105 -13.00375 -12.57608 -12.17200 -12.00073 -11.47363 -11.11692 -11.07154 -10.99255 -10.82794 -10.70209 -10.60795 -10.40713 -10.34751 -10.28246 -10.12902 -9.92522 -9.74698 -9.67000 -9.14735 -8.69859 -8.44160 -6.91686 -5.74203 -3.12139 0.31956 1.61496 1.98767 2.71405 2.83109 2.97578 3.11458 3.37519 3.42734 3.44498 4.12513 4.43150 4.46124 4.54241 4.86052 5.03425 5.13930 5.15420 5.21065 5.28203 5.43461 5.44234 5.51711 5.53996 5.73906 5.76746 5.86801 5.88220 6.00613 6.08186 6.11609 6.22065 6.25098 6.31149 6.40565 6.47773 6.61317 6.78699 6.83454 6.95751 7.33417 7.39779 7.59040 7.61634 7.77245 7.96496 8.20081 9.14138 9.74752 10.39833 11.34003 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026202 B = 0.002832 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.348059 B = 9883.657887 C =10393.419884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.172 3.828 11 C -0.151 4.151 12 C 0.128 3.872 13 H 0.106 0.894 14 C 0.157 3.843 15 H 0.062 0.938 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.095 3.905 19 N -0.578 5.578 20 C 0.590 3.410 21 O -0.512 6.512 22 C -0.023 4.023 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.070 4.070 26 C 0.611 3.389 27 N -0.841 5.841 28 O -0.520 6.520 29 O -0.146 6.146 30 H 0.253 0.747 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.409 0.591 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.230 -19.808 -5.939 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.047 3.953 11 C -0.190 4.190 12 C 0.024 3.976 13 H 0.124 0.876 14 C 0.048 3.952 15 H 0.080 0.920 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.027 4.027 19 N -0.309 5.309 20 C 0.376 3.624 21 O -0.389 6.389 22 C -0.077 4.077 23 C -0.160 4.160 24 C -0.143 4.143 25 C -0.123 4.123 26 C 0.395 3.605 27 N -0.405 5.405 28 O -0.397 6.397 29 O -0.043 6.043 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.238 0.762 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.991 -19.885 -5.327 20.682 hybrid contribution 0.453 1.077 -0.456 1.254 sum 2.444 -18.808 -5.783 19.828 Atomic orbital electron populations 1.69932 1.04939 1.25193 1.56410 1.24809 0.95642 0.97722 1.02083 0.86142 0.78620 0.83397 0.77621 1.21596 1.21714 1.20699 1.19012 0.91077 0.82434 1.43197 0.90407 1.44707 1.05389 0.99243 1.82581 1.21292 0.85591 0.87985 1.00401 1.23122 0.97284 0.99670 0.98901 1.21987 0.97153 0.77155 1.01280 0.87556 1.21324 0.93367 0.86092 0.94386 0.92018 1.22135 1.01688 0.93094 1.00141 1.21932 0.96341 0.97081 1.01738 1.22286 0.96014 0.99860 0.84529 1.47585 1.61417 1.06754 1.15111 1.16912 0.78648 0.81686 0.85133 1.90882 1.48805 1.80417 1.18828 1.22667 1.07651 0.95320 0.82088 1.21993 1.02392 0.89882 1.01740 1.21979 1.00552 1.00848 0.90915 1.22383 1.11797 0.81366 0.96762 1.16626 0.76159 0.86128 0.81558 1.43697 1.75047 1.12513 1.09196 1.90925 1.51276 1.12921 1.84561 1.84299 1.69308 1.19931 1.30742 0.93658 0.91206 0.95250 0.92225 0.91802 0.91908 0.91762 0.91070 0.91694 0.90819 0.88594 0.81268 0.81477 0.76196 0.75704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.25 10.48 55.49 0.58 -25.66 16 2 C -0.01 -0.16 5.44 -17.43 -0.09 -0.25 16 3 Si 0.91 21.61 29.56 -169.99 -5.03 16.59 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.11 10.28 -15.06 -0.15 -6.26 16 8 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 9 N -0.59 -14.29 2.91 -162.21 -0.47 -14.77 16 10 C 0.17 3.99 5.29 -2.88 -0.02 3.97 16 11 C -0.15 -2.73 6.08 -25.17 -0.15 -2.88 16 12 C 0.13 2.28 3.13 -67.29 -0.21 2.07 16 13 H 0.11 2.15 6.92 -51.93 -0.36 1.79 16 14 C 0.16 3.03 3.60 -66.36 -0.24 2.79 16 15 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.13 -2.10 5.10 -26.86 -0.14 -2.24 16 17 C -0.13 -1.56 6.10 -26.62 -0.16 -1.73 16 18 C 0.09 1.07 5.76 -3.64 -0.02 1.05 16 19 N -0.58 -8.44 2.73 -166.33 -0.45 -8.89 16 20 C 0.59 8.87 7.62 -12.58 -0.10 8.78 16 21 O -0.51 -9.30 16.20 5.27 0.09 -9.22 16 22 C -0.02 -0.28 6.74 -36.50 -0.25 -0.53 16 23 C -0.14 -1.49 10.60 -39.50 -0.42 -1.91 16 24 C -0.12 -1.18 10.60 -39.50 -0.42 -1.60 16 25 C -0.07 -0.68 7.14 -36.50 -0.26 -0.94 16 26 C 0.61 5.65 8.08 -12.58 -0.10 5.55 16 27 N -0.84 -4.51 8.87 30.40 0.27 -4.24 16 28 O -0.52 -6.44 17.70 5.26 0.09 -6.35 16 29 O -0.15 -1.46 6.94 4.36 0.03 -1.43 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.07 1.84 6.79 -51.93 -0.35 1.49 16 32 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16 33 H 0.06 0.98 6.80 -51.93 -0.35 0.63 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.10 7.12 -51.93 -0.37 0.73 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 40 H 0.10 0.92 4.23 -53.38 -0.23 0.69 16 41 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 42 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.41 1.49 8.59 -40.82 -0.35 1.14 16 44 H 0.41 1.49 8.93 -40.82 -0.36 1.13 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -32.45 356.21 -7.94 -40.39 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.69 Total: 2.36 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -2.73 Total: 5.86 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.08 Total: -53.57 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.21 Total: -17.00 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.45 -7.94 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049582557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.533 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds