Wall clock time and date at job start Tue Mar 31 2020 19:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00014 * 2 1 4 4 H 1.48505 * 109.46704 * 264.97831 * 3 2 1 5 5 H 1.48498 * 109.47116 * 24.97320 * 3 2 1 6 6 H 1.48491 * 109.47010 * 144.97867 * 3 2 1 7 7 C 1.38816 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99687 * 188.50737 * 7 2 1 9 9 N 1.36940 * 119.99997 * 8.50465 * 7 2 1 10 10 C 1.47127 * 125.76595 * 5.36686 * 9 7 2 11 11 C 1.54557 * 107.27637 * 182.58696 * 10 9 7 12 12 C 1.54419 * 102.38606 * 21.72165 * 11 10 9 13 13 H 1.09003 * 110.00561 * 81.02713 * 12 11 10 14 14 C 1.48210 * 125.76538 * 185.40074 * 9 7 2 15 15 H 1.08993 * 112.30522 * 33.42513 * 14 9 7 16 16 C 1.53005 * 107.11491 * 270.82203 * 14 9 7 17 17 C 1.52743 * 110.76558 * 191.90411 * 16 14 9 18 18 C 1.53461 * 108.43680 * 63.79534 * 17 16 14 19 19 N 1.45129 * 111.60917 * 203.37174 * 12 11 10 20 20 C 1.34771 * 119.57490 * 248.68136 * 19 12 11 21 21 O 1.21606 * 120.00204 * 352.27125 * 20 19 12 22 22 C 1.47295 * 119.99878 * 172.27537 * 20 19 12 23 23 C 1.36565 * 125.80764 * 172.36337 * 22 20 19 24 24 C 1.40056 * 106.92863 * 179.84634 * 23 22 20 25 25 C 1.36576 * 106.92340 * 0.41312 * 24 23 22 26 26 C 1.47287 * 125.80528 * 179.77958 * 25 24 23 27 27 N 1.34775 * 120.00202 * 179.97438 * 26 25 24 28 28 O 1.21619 * 120.00187 * 359.97438 * 26 25 24 29 29 O 1.34549 * 125.80164 * 352.66954 * 22 20 19 30 30 H 0.96998 * 120.00193 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88101 * 302.04197 * 10 9 7 32 32 H 1.08996 * 109.88468 * 63.05725 * 10 9 7 33 33 H 1.08999 * 110.88607 * 263.48158 * 11 10 9 34 34 H 1.09005 * 110.79971 * 139.91799 * 11 10 9 35 35 H 1.09004 * 109.20736 * 71.58973 * 16 14 9 36 36 H 1.09003 * 109.21638 * 312.22840 * 16 14 9 37 37 H 1.09005 * 109.63797 * 183.48267 * 17 16 14 38 38 H 1.09001 * 109.64054 * 303.89598 * 17 16 14 39 39 H 1.09003 * 109.83029 * 61.45137 * 18 17 16 40 40 H 1.09001 * 109.82954 * 182.32971 * 18 17 16 41 41 H 1.08007 * 126.53588 * 359.97438 * 23 22 20 42 42 H 1.08002 * 126.54052 * 180.11364 * 24 23 22 43 43 H 0.97001 * 119.99744 * 359.97438 * 27 26 25 44 44 H 0.97004 * 120.00138 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6038 1.9851 -1.3948 5 1 1.3986 2.6810 0.5911 6 1 3.4906 1.4731 0.8034 7 6 2.0103 -1.2022 0.0005 8 1 3.0813 -1.2072 0.1389 9 7 1.3369 -2.3817 -0.1743 10 6 -0.0954 -2.5166 -0.4827 11 6 -0.4158 -4.0281 -0.5232 12 6 0.7352 -4.6331 0.3097 13 1 0.5163 -4.5374 1.3732 14 6 1.9275 -3.7380 -0.0842 15 1 2.7282 -3.7923 0.6533 16 6 2.4307 -4.1038 -1.4821 17 6 2.7878 -5.5869 -1.5581 18 6 1.5096 -6.4061 -1.3343 19 7 0.9627 -6.0266 -0.0260 20 6 0.6675 -6.9845 0.8749 21 8 0.3478 -6.6767 2.0071 22 6 0.7321 -8.4043 0.4881 23 6 0.6030 -9.4693 1.3332 24 6 0.7248 -10.6260 0.5530 25 6 0.9324 -10.2178 -0.7336 26 6 1.1213 -11.1001 -1.8978 27 7 1.3181 -10.5692 -3.1208 28 8 1.0998 -12.3077 -1.7554 29 8 0.9343 -8.8725 -0.7570 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6888 -2.0320 0.2926 32 1 -0.3104 -2.0644 -1.4509 33 1 -0.3921 -4.4031 -1.5464 34 1 -1.3798 -4.2320 -0.0571 35 1 3.3152 -3.5096 -1.7117 36 1 1.6519 -3.8844 -2.2125 37 1 3.2014 -5.8142 -2.5407 38 1 3.5205 -5.8273 -0.7878 39 1 0.7850 -6.1820 -2.1172 40 1 1.7460 -7.4701 -1.3429 41 1 0.4363 -9.4275 2.3995 42 1 0.6702 -11.6464 0.9029 43 1 1.3349 -9.6060 -3.2345 44 1 1.4429 -11.1503 -3.8875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049582557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:04 Heat of formation + Delta-G solvation = -35.290073 kcal Electronic energy + Delta-G solvation = -29401.261584 eV Core-core repulsion = 25320.589036 eV Total energy + Delta-G solvation = -4080.672548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.04824 -41.63022 -40.33185 -39.49543 -36.92489 -35.00632 -34.37521 -34.06685 -33.78859 -31.66240 -30.68112 -29.78816 -26.98524 -26.09070 -25.17634 -23.60802 -23.10568 -22.19319 -21.88643 -21.51131 -20.06197 -19.29950 -18.85689 -18.59837 -17.93726 -17.82888 -17.35843 -16.79049 -16.28310 -16.01861 -15.87692 -15.49637 -15.40510 -15.17589 -15.11181 -14.47339 -14.31960 -14.26619 -14.21619 -14.04828 -13.80567 -13.49008 -13.06893 -12.83049 -12.62406 -12.36047 -12.29191 -12.06856 -11.93029 -11.84270 -11.69708 -11.55015 -11.31880 -11.23477 -11.14727 -10.86676 -10.71959 -10.05203 -9.66851 -8.89201 -7.81540 -5.21098 -0.53950 0.76687 1.07474 1.46722 1.48211 1.56269 1.77687 1.91807 1.99645 2.40070 2.50180 3.20814 3.33434 3.53574 3.68161 3.79931 3.84513 3.92203 4.01576 4.07377 4.09623 4.28647 4.37330 4.39362 4.53791 4.62967 4.66576 4.71844 4.79027 4.86993 4.97943 5.04939 5.08280 5.15926 5.31745 5.37677 5.40535 5.52157 5.57240 5.62814 5.74484 5.76781 6.17328 6.20865 6.25644 6.80193 7.07073 7.08654 7.75361 8.40321 9.25040 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026202 B = 0.002832 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.348059 B = 9883.657887 C =10393.419884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.615 5.615 10 C 0.182 3.818 11 C -0.132 4.132 12 C 0.144 3.856 13 H 0.076 0.924 14 C 0.151 3.849 15 H 0.050 0.950 16 C -0.120 4.120 17 C -0.122 4.122 18 C 0.093 3.907 19 N -0.578 5.578 20 C 0.592 3.408 21 O -0.554 6.554 22 C -0.043 4.043 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.059 4.059 26 C 0.612 3.388 27 N -0.817 5.817 28 O -0.554 6.554 29 O -0.136 6.136 30 H 0.246 0.754 31 H 0.028 0.972 32 H 0.003 0.997 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.176 0.824 42 H 0.183 0.817 43 H 0.421 0.579 44 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -22.305 -7.861 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.340 5.340 10 C 0.057 3.943 11 C -0.171 4.171 12 C 0.038 3.962 13 H 0.094 0.906 14 C 0.044 3.956 15 H 0.068 0.932 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.027 4.027 19 N -0.307 5.307 20 C 0.380 3.620 21 O -0.434 6.434 22 C -0.096 4.096 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.112 4.112 26 C 0.396 3.604 27 N -0.381 5.381 28 O -0.434 6.434 29 O -0.032 6.032 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.021 0.979 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.194 0.806 42 H 0.201 0.799 43 H 0.252 0.748 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.286 -22.406 -7.309 23.796 hybrid contribution 0.100 1.758 0.129 1.766 sum 3.386 -20.648 -7.180 22.122 Atomic orbital electron populations 1.70156 1.06293 1.25250 1.58049 1.25611 0.96469 1.00898 1.02784 0.85138 0.77541 0.79279 0.77639 1.21115 1.22427 1.19573 1.19364 0.91503 0.83730 1.41858 0.90086 1.44951 1.05936 1.00511 1.82598 1.20982 0.84994 0.90998 0.97370 1.22929 0.97656 0.95900 1.00604 1.21450 0.96073 0.79189 0.99455 0.90622 1.21534 0.93470 0.84277 0.96338 0.93239 1.21915 1.00749 0.96343 0.96930 1.21896 0.96691 0.93434 1.03987 1.22585 0.95971 1.01191 0.82991 1.47551 1.61593 1.05107 1.16489 1.17176 0.77596 0.82776 0.84473 1.90861 1.50540 1.81398 1.20567 1.22013 1.10610 0.93808 0.83203 1.22188 1.00617 0.89872 1.02161 1.22194 1.00433 1.01280 0.90794 1.22609 1.10330 0.81079 0.97221 1.16570 0.76193 0.85452 0.82231 1.43564 1.72809 1.13473 1.08290 1.90924 1.53205 1.14215 1.85048 1.84217 1.69332 1.20067 1.29632 0.94431 0.95361 0.97880 0.89570 0.91166 0.92958 0.92455 0.87243 0.91701 0.89130 0.86122 0.80645 0.79918 0.74775 0.74366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.68 10.48 21.65 0.23 -56.45 16 2 C -0.06 -3.62 5.44 84.86 0.46 -3.16 16 3 Si 0.98 45.42 29.56 68.60 2.03 47.45 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.24 -12.91 10.28 84.03 0.86 -12.04 16 8 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 9 N -0.62 -30.53 2.91 -667.10 -1.94 -32.47 16 10 C 0.18 8.80 5.29 86.79 0.46 9.26 16 11 C -0.13 -4.78 6.08 31.61 0.19 -4.59 16 12 C 0.14 5.13 3.13 46.14 0.14 5.28 16 13 H 0.08 3.19 6.92 -2.39 -0.02 3.17 16 14 C 0.15 5.88 3.60 45.07 0.16 6.04 16 15 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 16 C -0.12 -3.67 5.10 30.51 0.16 -3.51 16 17 C -0.12 -2.44 6.10 30.66 0.19 -2.25 16 18 C 0.09 1.75 5.76 86.48 0.50 2.25 16 19 N -0.58 -15.95 2.73 -798.41 -2.18 -18.13 16 20 C 0.59 17.14 7.62 86.63 0.66 17.80 16 21 O -0.55 -20.33 16.20 -4.05 -0.07 -20.40 16 22 C -0.04 -0.94 6.74 24.26 0.16 -0.77 16 23 C -0.13 -2.46 10.60 22.32 0.24 -2.22 16 24 C -0.13 -2.10 10.60 22.32 0.24 -1.86 16 25 C -0.06 -0.95 7.14 24.26 0.17 -0.78 16 26 C 0.61 9.30 8.08 86.62 0.70 10.00 16 27 N -0.82 -5.51 8.87 -175.98 -1.56 -7.07 16 28 O -0.55 -12.35 17.70 -4.09 -0.07 -12.42 16 29 O -0.14 -2.23 6.94 -7.32 -0.05 -2.28 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.03 1.59 6.79 -2.39 -0.02 1.57 16 32 H 0.00 0.16 8.04 -2.39 -0.02 0.14 16 33 H 0.09 2.67 6.80 -2.39 -0.02 2.65 16 34 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.85 7.12 -2.39 -0.02 1.83 16 37 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.49 7.53 -2.39 -0.02 1.47 16 40 H 0.12 1.74 4.23 -25.34 -0.11 1.63 16 41 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 42 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.42 1.08 8.59 -92.71 -0.80 0.28 16 44 H 0.42 1.46 8.93 -92.71 -0.83 0.63 16 Total: -1.00 -74.60 356.21 1.02 -73.57 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -0.65 Total: 8.77 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.29 Total: 19.43 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -5.46 Total: -114.13 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.19 Total: -35.10 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -74.60 1.02 -73.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049582557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.281 kcal (2) G-P(sol) polarization free energy of solvation -74.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds