Wall clock time and date at job start Tue Mar 31 2020 19:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48497 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47150 * 299.99374 * 3 2 1 6 6 H 1.48504 * 109.47169 * 59.99629 * 3 2 1 7 7 C 1.38813 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99972 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.48388 * 126.56225 * 0.02883 * 9 7 2 11 11 C 1.55467 * 106.97150 * 185.49725 * 10 9 7 12 12 C 1.53427 * 101.67529 * 22.59925 * 11 10 9 13 13 H 1.08996 * 111.75078 * 78.23085 * 12 11 10 14 14 C 1.45023 * 126.55849 * 179.97438 * 9 7 2 15 15 H 1.09004 * 108.26486 * 263.94309 * 14 9 7 16 16 C 1.51078 * 119.18730 * 28.82079 * 14 9 7 17 17 C 1.53869 * 107.40368 * 183.84611 * 16 14 9 18 18 C 1.52729 * 111.52242 * 303.18739 * 17 16 14 19 19 N 1.45730 * 116.37637 * 207.27128 * 12 11 10 20 20 C 1.34770 * 122.22988 * 350.13346 * 19 12 11 21 21 O 1.21680 * 120.00414 * 354.43522 * 20 19 12 22 22 C 1.46773 * 119.99999 * 174.43505 * 20 19 12 23 23 C 1.36064 * 125.65623 * 185.69069 * 22 20 19 24 24 C 1.41732 * 106.62580 * 179.97438 * 23 22 20 25 25 C 1.47487 * 126.77399 * 179.97438 * 24 23 22 26 26 N 1.34778 * 120.00123 * 180.02562 * 25 24 23 27 27 O 1.21596 * 120.00193 * 359.97438 * 25 24 23 28 28 C 1.37809 * 106.45077 * 0.02562 * 24 23 22 29 29 O 1.33499 * 108.34538 * 359.75049 * 28 24 23 30 30 H 0.97004 * 120.00010 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.96338 * 66.11476 * 10 9 7 32 32 H 1.08998 * 109.98706 * 304.88816 * 10 9 7 33 33 H 1.09005 * 110.98685 * 264.50043 * 11 10 9 34 34 H 1.09003 * 110.98434 * 140.69676 * 11 10 9 35 35 H 1.09001 * 109.88159 * 303.34511 * 16 14 9 36 36 H 1.08999 * 109.88341 * 64.34955 * 16 14 9 37 37 H 1.09007 * 109.06610 * 63.63887 * 17 16 14 38 38 H 1.09000 * 109.06964 * 182.58219 * 17 16 14 39 39 H 1.09003 * 109.09277 * 288.01268 * 18 17 16 40 40 H 1.08999 * 109.13164 * 168.82713 * 18 17 16 41 41 H 1.07999 * 126.68572 * 359.97438 * 23 22 20 42 42 H 0.97008 * 119.99785 * 0.02562 * 26 25 24 43 43 H 0.96995 * 119.99864 * 179.97438 * 26 25 24 44 44 H 1.08008 * 125.82796 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1486 -2.5576 -0.0006 11 6 -0.4305 -4.0798 0.1423 12 6 0.8705 -4.5774 0.7856 13 1 0.9021 -4.3599 1.8532 14 6 1.9024 -3.7186 0.0005 15 1 1.9381 -4.0755 -1.0288 16 6 3.2557 -3.9349 0.6364 17 6 3.6460 -5.4043 0.3994 18 6 2.5916 -6.3604 0.9532 19 7 1.2339 -5.9639 0.5224 20 6 0.3892 -6.8272 -0.0754 21 8 -0.7528 -6.4880 -0.3233 22 6 0.8466 -8.1767 -0.4274 23 6 0.1319 -9.0991 -1.1270 24 6 0.9519 -10.2500 -1.2360 25 6 0.6107 -11.5166 -1.9102 26 7 1.4995 -12.5296 -1.9311 27 8 -0.4728 -11.6473 -2.4465 28 6 2.1304 -9.9524 -0.5866 29 8 2.0474 -8.7061 -0.1155 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5649 -2.1884 -0.9378 32 1 -0.5864 -2.0177 0.8390 33 1 -0.5852 -4.5414 -0.8329 34 1 -1.2832 -4.2590 0.7972 35 1 3.9917 -3.2767 0.1746 36 1 3.1989 -3.7344 1.7062 37 1 3.7534 -5.5759 -0.6717 38 1 4.5999 -5.6026 0.8880 39 1 2.6380 -6.3504 2.0422 40 1 2.8005 -7.3686 0.5955 41 1 -0.8659 -8.9780 -1.5222 42 1 2.3634 -12.4258 -1.5023 43 1 1.2749 -13.3627 -2.3742 44 1 2.9783 -10.6130 -0.4811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049714212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:53 Heat of formation + Delta-G solvation = -6.916414 kcal Electronic energy + Delta-G solvation = -29224.025990 eV Core-core repulsion = 25144.583817 eV Total energy + Delta-G solvation = -4079.442174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.17826 -40.24923 -39.46220 -37.83442 -35.52784 -34.26516 -33.33800 -32.67846 -32.26043 -30.38921 -28.83141 -28.25684 -25.20528 -24.56743 -24.36504 -22.72101 -21.56556 -21.15622 -20.77219 -19.76416 -19.48292 -18.10370 -17.16952 -16.96626 -16.81031 -16.58120 -16.04309 -15.62257 -15.08086 -14.82994 -14.68762 -14.46962 -14.27969 -14.02891 -13.73672 -13.49228 -13.35598 -13.05940 -12.78703 -12.49439 -12.31141 -11.88462 -11.56376 -11.10691 -10.88160 -10.74420 -10.63541 -10.55952 -10.44942 -10.37480 -10.15778 -10.09944 -10.04458 -9.88452 -9.63950 -9.38117 -9.08198 -8.61302 -8.32960 -6.84239 -5.70860 -3.05347 0.67616 1.32075 2.21363 2.89721 2.93422 3.15748 3.21301 3.39785 3.44698 3.47615 4.08245 4.22635 4.46569 4.49998 4.79053 5.02349 5.10794 5.16987 5.27482 5.31899 5.35411 5.41902 5.58405 5.69483 5.80868 5.83347 5.91808 5.95630 6.02524 6.22752 6.24824 6.32577 6.34326 6.38663 6.53141 6.67597 6.74348 6.84536 6.86583 7.10543 7.48565 7.58566 7.65160 7.83079 7.83999 8.14563 8.24126 9.18356 9.82158 10.49880 11.41230 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026849 B = 0.002743 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.604591 B =10205.171336 C =10820.959452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.130 4.130 12 C 0.116 3.884 13 H 0.085 0.915 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.097 3.903 19 N -0.588 5.588 20 C 0.598 3.402 21 O -0.506 6.506 22 C -0.063 4.063 23 C -0.075 4.075 24 C -0.241 4.241 25 C 0.593 3.407 26 N -0.852 5.852 27 O -0.533 6.533 28 C 0.028 3.972 29 O -0.143 6.143 30 H 0.252 0.748 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.171 0.829 42 H 0.399 0.601 43 H 0.407 0.593 44 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 -23.918 1.656 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.168 4.168 12 C 0.012 3.988 13 H 0.103 0.897 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.155 4.155 17 C -0.167 4.167 18 C -0.024 4.024 19 N -0.319 5.319 20 C 0.384 3.616 21 O -0.383 6.383 22 C -0.114 4.114 23 C -0.096 4.096 24 C -0.245 4.245 25 C 0.379 3.621 26 N -0.416 5.416 27 O -0.410 6.410 28 C -0.044 4.044 29 O -0.037 6.037 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.188 0.812 42 H 0.227 0.773 43 H 0.238 0.762 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.181 -23.182 1.389 24.623 hybrid contribution 0.936 0.376 -0.035 1.009 sum 9.117 -22.807 1.354 24.599 Atomic orbital electron populations 1.69955 1.04884 1.24999 1.56775 1.24816 0.95682 0.97654 1.02233 0.86071 0.78662 0.83917 0.77244 1.20549 1.21774 1.21777 1.19025 0.90350 0.82147 1.43922 0.90279 1.44103 1.01793 0.99297 1.86525 1.21748 0.83634 0.88538 1.01282 1.22947 0.94670 0.98088 1.01130 1.22539 0.99031 0.77581 0.99642 0.89688 1.20774 0.91352 0.87247 0.95688 0.96446 1.21441 0.98518 0.94176 1.01359 1.21896 0.97598 0.95587 1.01595 1.22192 0.81162 0.99350 0.99732 1.47949 1.14565 1.11508 1.57905 1.16634 0.85084 0.81136 0.78708 1.90921 1.17477 1.75100 1.54804 1.22382 0.84736 0.96819 1.07470 1.21840 1.01033 0.89834 0.96875 1.20591 0.96908 0.97367 1.09660 1.17267 0.83816 0.82464 0.78559 1.43655 1.19524 1.17564 1.60883 1.90866 1.22756 1.81990 1.45366 1.25145 0.98857 0.85029 0.95410 1.84154 1.33778 1.25050 1.60756 0.93726 0.94122 0.92368 0.90412 0.91642 0.91327 0.91666 0.91828 0.90754 0.91191 0.88302 0.81180 0.77290 0.76154 0.76780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.06 10.46 55.49 0.58 -26.48 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.16 9.94 -15.06 -0.15 -6.31 16 8 H 0.08 2.06 7.31 -52.49 -0.38 1.68 16 9 N -0.59 -14.97 3.35 -163.27 -0.55 -15.51 16 10 C 0.17 4.31 5.47 -1.69 -0.01 4.30 16 11 C -0.13 -2.72 4.93 -25.20 -0.12 -2.84 16 12 C 0.12 2.16 3.33 -66.78 -0.22 1.94 16 13 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 14 C 0.16 3.24 2.57 -68.35 -0.18 3.07 16 15 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 16 C -0.12 -1.92 5.45 -27.25 -0.15 -2.07 16 17 C -0.13 -1.55 5.93 -26.42 -0.16 -1.71 16 18 C 0.10 1.14 6.30 -3.44 -0.02 1.12 16 19 N -0.59 -9.14 2.91 -165.46 -0.48 -9.62 16 20 C 0.60 9.66 7.60 -12.81 -0.10 9.56 16 21 O -0.51 -9.72 13.85 5.21 0.07 -9.65 16 22 C -0.06 -0.81 6.87 -36.91 -0.25 -1.06 16 23 C -0.07 -0.94 10.42 -39.03 -0.41 -1.35 16 24 C -0.24 -2.30 6.16 -104.95 -0.65 -2.95 16 25 C 0.59 5.80 8.09 -12.49 -0.10 5.69 16 26 N -0.85 -3.81 8.86 30.45 0.27 -3.54 16 27 O -0.53 -7.75 17.77 5.28 0.09 -7.65 16 28 C 0.03 0.18 11.64 30.58 0.36 0.53 16 29 O -0.14 -1.33 7.08 6.18 0.04 -1.29 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.04 1.12 7.81 -51.93 -0.41 0.71 16 32 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 33 H 0.08 1.70 6.39 -51.93 -0.33 1.37 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 36 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.98 3.95 -54.25 -0.21 0.76 16 41 H 0.17 2.30 8.06 -52.49 -0.42 1.87 16 42 H 0.40 0.34 7.78 -40.82 -0.32 0.02 16 43 H 0.41 1.41 8.93 -40.82 -0.36 1.04 16 44 H 0.22 0.11 7.46 -52.48 -0.39 -0.28 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -36.03 353.11 -7.62 -43.65 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.69 Total: 0.25 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -2.25 Total: 7.61 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.18 Total: -55.16 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.21 Total: -18.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.03 -7.62 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049714212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.734 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds