Wall clock time and date at job start Tue Mar 31 2020 19:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48497 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47150 * 299.99374 * 3 2 1 6 6 H 1.48504 * 109.47169 * 59.99629 * 3 2 1 7 7 C 1.38813 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99972 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.48388 * 126.56225 * 0.02883 * 9 7 2 11 11 C 1.55467 * 106.97150 * 185.49725 * 10 9 7 12 12 C 1.53427 * 101.67529 * 22.59925 * 11 10 9 13 13 H 1.08996 * 111.75078 * 78.23085 * 12 11 10 14 14 C 1.45023 * 126.55849 * 179.97438 * 9 7 2 15 15 H 1.09004 * 108.26486 * 263.94309 * 14 9 7 16 16 C 1.51078 * 119.18730 * 28.82079 * 14 9 7 17 17 C 1.53869 * 107.40368 * 183.84611 * 16 14 9 18 18 C 1.52729 * 111.52242 * 303.18739 * 17 16 14 19 19 N 1.45730 * 116.37637 * 207.27128 * 12 11 10 20 20 C 1.34770 * 122.22988 * 350.13346 * 19 12 11 21 21 O 1.21680 * 120.00414 * 354.43522 * 20 19 12 22 22 C 1.46773 * 119.99999 * 174.43505 * 20 19 12 23 23 C 1.36064 * 125.65623 * 185.69069 * 22 20 19 24 24 C 1.41732 * 106.62580 * 179.97438 * 23 22 20 25 25 C 1.47487 * 126.77399 * 179.97438 * 24 23 22 26 26 N 1.34778 * 120.00123 * 180.02562 * 25 24 23 27 27 O 1.21596 * 120.00193 * 359.97438 * 25 24 23 28 28 C 1.37809 * 106.45077 * 0.02562 * 24 23 22 29 29 O 1.33499 * 108.34538 * 359.75049 * 28 24 23 30 30 H 0.97004 * 120.00010 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.96338 * 66.11476 * 10 9 7 32 32 H 1.08998 * 109.98706 * 304.88816 * 10 9 7 33 33 H 1.09005 * 110.98685 * 264.50043 * 11 10 9 34 34 H 1.09003 * 110.98434 * 140.69676 * 11 10 9 35 35 H 1.09001 * 109.88159 * 303.34511 * 16 14 9 36 36 H 1.08999 * 109.88341 * 64.34955 * 16 14 9 37 37 H 1.09007 * 109.06610 * 63.63887 * 17 16 14 38 38 H 1.09000 * 109.06964 * 182.58219 * 17 16 14 39 39 H 1.09003 * 109.09277 * 288.01268 * 18 17 16 40 40 H 1.08999 * 109.13164 * 168.82713 * 18 17 16 41 41 H 1.07999 * 126.68572 * 359.97438 * 23 22 20 42 42 H 0.97008 * 119.99785 * 0.02562 * 26 25 24 43 43 H 0.96995 * 119.99864 * 179.97438 * 26 25 24 44 44 H 1.08008 * 125.82796 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1486 -2.5576 -0.0006 11 6 -0.4305 -4.0798 0.1423 12 6 0.8705 -4.5774 0.7856 13 1 0.9021 -4.3599 1.8532 14 6 1.9024 -3.7186 0.0005 15 1 1.9381 -4.0755 -1.0288 16 6 3.2557 -3.9349 0.6364 17 6 3.6460 -5.4043 0.3994 18 6 2.5916 -6.3604 0.9532 19 7 1.2339 -5.9639 0.5224 20 6 0.3892 -6.8272 -0.0754 21 8 -0.7528 -6.4880 -0.3233 22 6 0.8466 -8.1767 -0.4274 23 6 0.1319 -9.0991 -1.1270 24 6 0.9519 -10.2500 -1.2360 25 6 0.6107 -11.5166 -1.9102 26 7 1.4995 -12.5296 -1.9311 27 8 -0.4728 -11.6473 -2.4465 28 6 2.1304 -9.9524 -0.5866 29 8 2.0474 -8.7061 -0.1155 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5649 -2.1884 -0.9378 32 1 -0.5864 -2.0177 0.8390 33 1 -0.5852 -4.5414 -0.8329 34 1 -1.2832 -4.2590 0.7972 35 1 3.9917 -3.2767 0.1746 36 1 3.1989 -3.7344 1.7062 37 1 3.7534 -5.5759 -0.6717 38 1 4.5999 -5.6026 0.8880 39 1 2.6380 -6.3504 2.0422 40 1 2.8005 -7.3686 0.5955 41 1 -0.8659 -8.9780 -1.5222 42 1 2.3634 -12.4258 -1.5023 43 1 1.2749 -13.3627 -2.3742 44 1 2.9783 -10.6130 -0.4811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049714212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:51 Heat of formation + Delta-G solvation = -35.608097 kcal Electronic energy + Delta-G solvation = -29225.270155 eV Core-core repulsion = 25144.583817 eV Total energy + Delta-G solvation = -4080.686338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -43.97899 -41.60510 -40.22033 -39.29007 -37.03041 -34.97359 -34.30322 -34.15389 -33.82748 -31.57569 -30.43814 -29.70759 -26.63781 -26.27611 -25.12883 -23.91393 -22.87523 -22.32544 -21.98987 -21.28415 -20.52071 -19.10761 -18.45825 -17.82456 -17.69999 -17.60008 -17.24479 -16.88710 -16.64741 -16.28895 -15.82585 -15.60153 -15.46002 -15.36134 -15.06911 -14.79490 -14.53158 -14.30333 -14.04757 -13.89468 -13.69546 -13.42628 -13.13789 -12.86625 -12.75300 -12.35063 -12.04491 -11.93111 -11.80385 -11.73024 -11.57491 -11.49668 -11.32937 -11.22212 -10.89291 -10.72061 -10.70144 -9.95586 -9.59399 -8.92302 -7.84250 -5.21430 -0.09314 0.46214 1.33876 1.46537 1.48037 1.58110 1.86755 1.98148 2.29954 2.49281 2.52180 3.23939 3.34748 3.44312 3.49660 3.80194 3.89815 4.00965 4.01945 4.06609 4.18762 4.30460 4.33603 4.44427 4.53880 4.55153 4.62394 4.68015 4.86807 4.95533 4.97201 5.01955 5.11709 5.15318 5.28876 5.41052 5.48797 5.55685 5.58911 5.63346 5.70530 5.87069 6.17015 6.31771 6.44756 6.92093 7.04843 7.30869 7.74872 8.44695 9.27899 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026849 B = 0.002743 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.604591 B =10205.171336 C =10820.959452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.230 4.230 8 H 0.092 0.908 9 N -0.612 5.612 10 C 0.183 3.817 11 C -0.114 4.114 12 C 0.132 3.868 13 H 0.090 0.910 14 C 0.153 3.847 15 H -0.002 1.002 16 C -0.112 4.112 17 C -0.117 4.117 18 C 0.092 3.908 19 N -0.589 5.589 20 C 0.593 3.407 21 O -0.554 6.554 22 C -0.082 4.082 23 C -0.084 4.084 24 C -0.270 4.270 25 C 0.592 3.408 26 N -0.822 5.822 27 O -0.596 6.596 28 C 0.093 3.907 29 O -0.136 6.136 30 H 0.246 0.754 31 H -0.001 1.001 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.421 0.579 43 H 0.415 0.585 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.162 -27.178 2.918 30.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.225 1.225 6 H -0.220 1.220 7 C -0.359 4.359 8 H 0.109 0.891 9 N -0.336 5.336 10 C 0.058 3.942 11 C -0.153 4.153 12 C 0.027 3.973 13 H 0.108 0.892 14 C 0.045 3.955 15 H 0.016 0.984 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.027 4.027 19 N -0.320 5.320 20 C 0.382 3.618 21 O -0.434 6.434 22 C -0.133 4.133 23 C -0.105 4.105 24 C -0.274 4.274 25 C 0.378 3.622 26 N -0.386 5.386 27 O -0.478 6.478 28 C 0.020 3.980 29 O -0.030 6.030 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.162 0.838 42 H 0.253 0.747 43 H 0.248 0.752 44 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 13.069 -26.513 2.678 29.680 hybrid contribution -0.477 1.213 -0.480 1.389 sum 12.592 -25.300 2.197 28.346 Atomic orbital electron populations 1.70188 1.06566 1.25219 1.58534 1.25720 0.96544 1.01260 1.02861 0.84985 0.78418 0.79321 0.76468 1.18356 1.22471 1.21967 1.19461 0.91081 0.82988 1.42326 0.89063 1.44360 1.01968 1.00933 1.86372 1.21430 0.84052 0.90854 0.97873 1.22669 0.96531 0.95097 1.00968 1.22122 0.96377 0.79705 0.99128 0.89246 1.20957 0.94353 0.84898 0.95292 0.98422 1.21428 0.95298 0.97512 1.00819 1.21877 0.99475 0.92059 1.02153 1.22549 0.78519 1.00511 1.01131 1.48001 1.16273 1.09823 1.57897 1.17012 0.84593 0.82375 0.77837 1.90886 1.19524 1.76514 1.56496 1.21388 0.86521 0.95520 1.09868 1.21834 1.00582 0.91562 0.96528 1.20580 0.98062 0.96748 1.12045 1.17367 0.83586 0.83274 0.77973 1.43391 1.19399 1.16399 1.59453 1.90846 1.25536 1.83078 1.48295 1.26368 0.98519 0.83330 0.89760 1.84075 1.31834 1.26339 1.60786 0.94488 0.98224 0.95286 0.91636 0.91348 0.92223 0.91372 0.92027 0.86462 0.89055 0.85591 0.83807 0.74651 0.75197 0.69822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.29 10.46 21.65 0.23 -59.06 16 2 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 3 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.23 -12.78 9.94 84.03 0.84 -11.95 16 8 H 0.09 4.73 7.31 -2.91 -0.02 4.71 16 9 N -0.61 -32.11 3.35 -670.46 -2.25 -34.35 16 10 C 0.18 9.84 5.47 86.86 0.48 10.31 16 11 C -0.11 -5.09 4.93 31.59 0.16 -4.94 16 12 C 0.13 4.96 3.33 46.15 0.15 5.11 16 13 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 14 C 0.15 6.31 2.57 45.51 0.12 6.43 16 15 H 0.00 -0.07 8.06 -2.39 -0.02 -0.09 16 16 C -0.11 -3.48 5.45 30.26 0.16 -3.31 16 17 C -0.12 -2.36 5.93 30.80 0.18 -2.17 16 18 C 0.09 1.80 6.30 86.03 0.54 2.34 16 19 N -0.59 -17.67 2.91 -795.63 -2.32 -19.99 16 20 C 0.59 19.23 7.60 86.48 0.66 19.89 16 21 O -0.55 -22.52 13.85 -4.29 -0.06 -22.58 16 22 C -0.08 -1.99 6.87 24.00 0.16 -1.83 16 23 C -0.08 -2.09 10.42 22.63 0.24 -1.86 16 24 C -0.27 -4.40 6.16 -20.08 -0.12 -4.52 16 25 C 0.59 10.32 8.09 86.68 0.70 11.03 16 26 N -0.82 -4.02 8.86 -175.84 -1.56 -5.58 16 27 O -0.60 -17.51 17.77 -4.02 -0.07 -17.58 16 28 C 0.09 0.58 11.64 67.72 0.79 1.37 16 29 O -0.14 -1.87 7.08 -0.79 -0.01 -1.88 16 30 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.00 -0.03 7.81 -2.39 -0.02 -0.05 16 32 H 0.03 1.70 7.19 -2.39 -0.02 1.68 16 33 H 0.07 3.09 6.39 -2.38 -0.02 3.07 16 34 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.06 1.95 7.70 -2.39 -0.02 1.93 16 36 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 37 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.13 1.79 3.95 -39.06 -0.15 1.64 16 41 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 42 H 0.42 -1.87 7.78 -92.70 -0.72 -2.59 16 43 H 0.42 1.45 8.93 -92.71 -0.83 0.62 16 44 H 0.29 -2.48 7.46 -2.91 -0.02 -2.50 16 Total: -1.00 -89.33 353.11 0.89 -88.45 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -0.62 Total: 2.25 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 5.52 Total: 22.26 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -5.90 Total: -118.98 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.14 Total: -42.04 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -89.33 0.89 -88.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049714212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.840 kcal (2) G-P(sol) polarization free energy of solvation -89.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds