Wall clock time and date at job start Tue Mar 31 2020 18:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99689 * 2 1 4 4 H 1.48505 * 109.47280 * 269.99801 * 3 2 1 5 5 H 1.48498 * 109.47384 * 30.00256 * 3 2 1 6 6 H 1.48502 * 109.47052 * 150.00290 * 3 2 1 7 7 C 1.38809 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00080 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.47669 * 134.45782 * 179.97438 * 9 7 2 11 11 C 1.53443 * 85.98172 * 155.66273 * 10 9 7 12 12 C 1.47669 * 134.45524 * 359.94636 * 9 7 2 13 13 C 1.52881 * 113.55944 * 137.63609 * 11 10 9 14 14 N 1.47342 * 108.05177 * 179.97438 * 13 11 10 15 15 C 1.34773 * 121.05620 * 131.58209 * 14 13 11 16 16 O 1.21285 * 120.00077 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99948 * 180.02562 * 15 14 13 18 18 O 1.42902 * 109.46993 * 180.02562 * 17 15 14 19 19 C 1.35913 * 116.99826 * 179.97438 * 18 17 15 20 20 C 1.39136 * 120.47526 * 180.24861 * 19 18 17 21 21 C 1.38529 * 118.37790 * 180.26261 * 20 19 18 22 22 C 1.38260 * 119.22068 * 359.75881 * 21 20 19 23 23 N 1.31848 * 120.88276 * 359.96906 * 22 21 20 24 24 C 1.31842 * 121.78210 * 0.02739 * 23 22 21 25 25 C 1.47129 * 117.88680 * 311.85453 * 14 13 11 26 26 C 1.52807 * 108.95361 * 51.93117 * 25 14 13 27 27 O 1.42483 * 113.80713 * 268.77061 * 11 10 9 28 28 H 0.96997 * 120.00039 * 359.97438 * 1 2 3 29 29 H 1.09004 * 113.79103 * 41.39548 * 10 9 7 30 30 H 1.09001 * 113.90333 * 269.94251 * 10 9 7 31 31 H 1.08991 * 113.79570 * 90.06977 * 12 9 7 32 32 H 1.09000 * 113.78849 * 318.59248 * 12 9 7 33 33 H 1.09000 * 109.75026 * 60.32296 * 13 11 10 34 34 H 1.09005 * 109.78850 * 299.62599 * 13 11 10 35 35 H 1.08998 * 109.46878 * 59.99918 * 17 15 14 36 36 H 1.08996 * 109.47095 * 299.99768 * 17 15 14 37 37 H 1.08004 * 120.81191 * 0.02562 * 20 19 18 38 38 H 1.08007 * 120.39570 * 179.72990 * 21 20 19 39 39 H 1.07995 * 119.55605 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.65465 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.59313 * 171.75084 * 25 14 13 42 42 H 1.08998 * 109.59441 * 292.20817 * 25 14 13 43 43 H 1.08993 * 109.55850 * 186.04530 * 26 25 14 44 44 H 1.09002 * 109.37074 * 66.02069 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.7214 -3.8107 -0.0015 11 6 0.3494 -4.0811 0.6303 12 6 -0.1043 -2.7567 0.0009 13 6 -0.3594 -5.3056 0.0510 14 7 -1.6541 -5.4518 0.7391 15 6 -2.7931 -5.6424 0.0443 16 8 -2.7627 -5.6964 -1.1670 17 6 -4.1044 -5.7883 0.7725 18 8 -5.1567 -5.9797 -0.1752 19 6 -6.4134 -6.1300 0.3203 20 6 -7.4913 -6.3259 -0.5374 21 6 -8.7541 -6.4684 0.0140 22 6 -8.9003 -6.4168 1.3879 23 7 -7.8570 -6.2352 2.1732 24 6 -6.6389 -6.0954 1.6884 25 6 -1.6647 -5.3769 2.2084 26 6 -0.9440 -4.1024 2.6457 27 8 0.3593 -4.0665 2.0550 28 1 -0.4850 0.8400 0.0004 29 1 2.5606 -4.0341 0.6573 30 1 1.8380 -4.2360 -0.9983 31 1 -0.5310 -2.8670 -0.9959 32 1 -0.7160 -2.1426 0.6618 33 1 0.2482 -6.1954 0.2162 34 1 -0.5241 -5.1656 -1.0174 35 1 -4.2987 -4.8877 1.3549 36 1 -4.0557 -6.6490 1.4395 37 1 -7.3475 -6.3620 -1.6073 38 1 -9.6144 -6.6175 -0.6217 39 1 -9.8824 -6.5269 1.8235 40 1 -5.8088 -5.9479 2.3634 41 1 -2.6942 -5.3540 2.5658 42 1 -1.1509 -6.2445 2.6224 43 1 -0.8516 -4.0898 3.7316 44 1 -1.5156 -3.2336 2.3191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053472113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:41 Heat of formation + Delta-G solvation = 5.793883 kcal Electronic energy + Delta-G solvation = -28701.781973 eV Core-core repulsion = 24622.890959 eV Total energy + Delta-G solvation = -4078.891014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -41.07853 -40.39996 -39.04417 -37.94359 -36.31196 -34.56514 -32.77217 -32.31244 -30.91218 -30.22559 -29.16511 -27.60739 -25.81833 -25.12584 -23.98429 -23.40792 -23.26389 -21.83543 -19.61147 -18.91887 -18.75450 -17.46302 -17.12142 -16.85152 -16.70730 -16.53803 -16.11707 -15.54607 -15.14764 -14.91144 -14.77118 -14.44951 -14.23244 -13.99606 -13.95808 -13.47156 -13.36175 -13.32325 -12.94129 -12.70484 -12.53257 -12.38108 -12.07453 -11.77332 -11.38543 -11.19169 -10.92718 -10.82693 -10.71476 -10.31862 -10.07656 -10.06799 -9.85277 -9.67868 -9.61409 -9.30992 -8.84341 -8.81535 -8.36838 -6.90054 -5.76483 -3.08921 0.75642 0.94924 2.19589 2.45269 3.18252 3.39838 3.44322 3.45849 3.46503 3.96201 4.07312 4.15699 4.33344 4.43465 4.54094 4.58203 4.67754 4.73138 4.80307 4.86091 5.03259 5.05802 5.16049 5.18112 5.22032 5.28469 5.51105 5.61225 5.64899 5.74763 5.75705 5.88521 5.98991 6.11857 6.22114 6.33910 6.45565 6.49369 6.81659 6.96445 7.15633 7.22627 7.47627 7.59524 7.74954 7.96387 8.01601 9.03381 9.70232 10.55827 11.40618 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.002643 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.659541 B =10590.359123 C =11201.339391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.603 5.603 10 C 0.137 3.863 11 C 0.048 3.952 12 C 0.151 3.849 13 C 0.102 3.898 14 N -0.606 5.606 15 C 0.520 3.480 16 O -0.514 6.514 17 C 0.039 3.961 18 O -0.282 6.282 19 C 0.083 3.917 20 C -0.106 4.106 21 C -0.131 4.131 22 C 0.057 3.943 23 N -0.450 5.450 24 C 0.014 3.986 25 C 0.070 3.930 26 C 0.046 3.954 27 O -0.339 6.339 28 H 0.253 0.747 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.205 -16.315 5.291 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.010 3.990 11 C 0.006 3.994 12 C 0.025 3.975 13 C -0.021 4.021 14 N -0.342 5.342 15 C 0.306 3.694 16 O -0.389 6.389 17 C -0.039 4.039 18 O -0.192 6.192 19 C 0.035 3.965 20 C -0.132 4.132 21 C -0.150 4.150 22 C -0.101 4.101 23 N -0.159 5.159 24 C -0.144 4.144 25 C -0.053 4.053 26 C -0.032 4.032 27 O -0.257 6.257 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.010 -15.939 5.430 21.905 hybrid contribution 0.295 0.958 -0.819 1.295 sum -13.715 -14.981 4.611 20.827 Atomic orbital electron populations 1.69810 1.05052 1.25304 1.56803 1.24776 0.95682 0.97543 1.02466 0.86099 0.78620 0.83357 0.77558 1.21624 1.21665 1.20576 1.18994 0.90265 0.81717 1.43642 0.90081 1.45781 1.01928 0.99156 1.86058 1.22484 0.93157 0.86758 0.96569 1.23741 0.99300 0.94474 0.81870 1.22693 0.88707 0.88878 0.97190 1.22320 0.82005 0.98686 0.99068 1.48036 1.07127 1.71966 1.07028 1.19793 0.84256 0.77507 0.87802 1.90761 1.85889 1.48857 1.13352 1.22604 0.86027 1.03481 0.91801 1.86188 1.12554 1.86464 1.34014 1.20145 0.85493 0.97172 0.93710 1.21005 0.90343 1.00982 1.00877 1.22047 0.97164 0.99157 0.96672 1.22684 0.97814 0.99182 0.90423 1.67524 0.98817 1.09327 1.40207 1.22935 0.96044 1.03510 0.91888 1.22449 1.02157 1.00726 0.79938 1.22804 0.85992 0.95739 0.98697 1.87955 1.25551 1.94249 1.17950 0.93698 0.92525 0.93175 0.94824 0.90586 0.90910 0.87821 0.88463 0.88731 0.83697 0.83935 0.82464 0.82485 0.89513 0.90053 0.87838 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.66 11.39 55.49 0.63 -27.03 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 8 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 9 N -0.60 -15.68 3.70 -180.28 -0.67 -16.35 16 10 C 0.14 2.79 8.33 -3.18 -0.03 2.77 16 11 C 0.05 0.90 1.21 -90.29 -0.11 0.79 16 12 C 0.15 3.60 6.65 -3.15 -0.02 3.58 16 13 C 0.10 1.58 5.78 -3.64 -0.02 1.56 16 14 N -0.61 -8.22 3.03 -172.69 -0.52 -8.74 16 15 C 0.52 7.53 7.79 -10.99 -0.09 7.44 16 16 O -0.51 -9.67 15.99 -14.36 -0.23 -9.90 16 17 C 0.04 0.41 3.60 36.01 0.13 0.54 16 18 O -0.28 -3.58 9.68 -39.38 -0.38 -3.96 16 19 C 0.08 0.90 6.71 -39.08 -0.26 0.64 16 20 C -0.11 -0.99 10.13 -39.14 -0.40 -1.39 16 21 C -0.13 -0.97 10.11 -39.47 -0.40 -1.37 16 22 C 0.06 0.47 11.18 -17.54 -0.20 0.27 16 23 N -0.45 -4.72 10.36 -13.13 -0.14 -4.85 16 24 C 0.01 0.14 10.22 -17.38 -0.18 -0.04 16 25 C 0.07 0.72 6.48 -3.80 -0.02 0.69 16 26 C 0.05 0.61 6.87 37.06 0.25 0.87 16 27 O -0.34 -6.17 10.52 -35.23 -0.37 -6.54 16 28 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 31 H 0.03 0.85 7.94 -51.93 -0.41 0.44 16 32 H 0.08 2.01 6.31 -51.93 -0.33 1.68 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.77 6.91 -51.93 -0.36 1.41 16 35 H 0.10 0.83 7.22 -51.93 -0.37 0.45 16 36 H 0.09 0.67 7.53 -51.93 -0.39 0.28 16 37 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.16 1.17 6.32 -52.49 -0.33 0.84 16 41 H 0.09 0.58 6.03 -51.93 -0.31 0.27 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 0.96 7.19 -51.93 -0.37 0.58 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -37.05 363.22 -8.63 -45.67 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.81 Total: -0.79 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -1.59 Total: 9.64 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.69 Total: -56.97 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.98 Total: -20.40 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.05 -8.63 -45.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053472113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.467 kcal (2) G-P(sol) polarization free energy of solvation -37.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds