Wall clock time and date at job start Tue Mar 31 2020 19:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 119.99868 * 2 1 4 4 H 1.48502 * 109.47471 * 355.35012 * 3 2 1 5 5 H 1.48504 * 109.47042 * 235.35047 * 3 2 1 6 6 H 1.48501 * 109.47081 * 115.35288 * 3 2 1 7 7 C 1.38808 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00050 * 352.34475 * 7 2 1 9 9 N 1.36932 * 119.99884 * 172.34298 * 7 2 1 10 10 C 1.47219 * 135.96815 * 6.43146 * 9 7 2 11 11 C 1.52948 * 87.66954 * 153.63716 * 10 9 7 12 12 C 1.47222 * 135.96431 * 186.79269 * 9 7 2 13 13 C 1.53322 * 115.75865 * 270.15357 * 11 10 9 14 14 C 1.55030 * 103.78366 * 229.61267 * 13 11 10 15 15 C 1.55059 * 102.12935 * 20.86698 * 14 13 11 16 16 H 1.08992 * 110.59061 * 82.02380 * 15 14 13 17 17 C 1.53005 * 110.58197 * 204.93083 * 15 14 13 18 18 N 1.46497 * 109.47085 * 184.99868 * 17 15 14 19 19 C 1.34779 * 119.99883 * 180.02562 * 18 17 15 20 20 O 1.21513 * 119.99944 * 359.97438 * 19 18 17 21 21 C 1.48150 * 119.99740 * 180.02562 * 19 18 17 22 22 C 1.39176 * 119.68806 * 179.72122 * 21 19 18 23 23 C 1.38736 * 119.18320 * 179.79400 * 22 21 19 24 24 C 1.38375 * 118.56285 * 0.46614 * 23 22 21 25 25 C 1.39245 * 119.30381 * 359.76060 * 24 23 22 26 26 O 1.35667 * 119.61522 * 179.97438 * 25 24 23 27 27 N 1.31926 * 120.76623 * 0.02562 * 25 24 23 28 28 O 1.42842 * 115.80569 * 141.75338 * 11 10 9 29 29 H 0.96991 * 120.00047 * 184.89356 * 1 2 3 30 30 H 1.09004 * 113.49685 * 268.31194 * 10 9 7 31 31 H 1.08993 * 113.49991 * 38.85415 * 10 9 7 32 32 H 1.09002 * 113.50277 * 321.14458 * 12 9 7 33 33 H 1.09005 * 113.50136 * 91.62216 * 12 9 7 34 34 H 1.08993 * 110.56139 * 348.19176 * 13 11 10 35 35 H 1.08997 * 110.56096 * 110.89591 * 13 11 10 36 36 H 1.09008 * 110.86750 * 139.02421 * 14 13 11 37 37 H 1.08996 * 110.87413 * 262.70216 * 14 13 11 38 38 H 1.09002 * 109.47292 * 305.00228 * 17 15 14 39 39 H 1.09006 * 109.47169 * 64.99747 * 17 15 14 40 40 H 0.96994 * 120.00344 * 359.97438 * 18 17 15 41 41 H 1.07999 * 120.40597 * 0.02562 * 22 21 19 42 42 H 1.08001 * 120.71728 * 180.20584 * 23 22 21 43 43 H 1.07995 * 120.35048 * 179.72438 * 24 23 22 44 44 H 0.96699 * 113.99637 * 270.01392 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2893 2.7442 -0.1135 5 1 3.1871 1.6484 -1.1518 6 1 3.0169 1.7467 1.2652 7 6 2.0103 -1.2021 0.0005 8 1 1.4775 -2.1332 0.1256 9 7 3.3705 -1.2075 -0.1575 10 6 4.4311 -0.1894 -0.2342 11 6 5.4009 -1.2502 0.2889 12 6 4.4117 -2.2336 -0.3314 13 6 5.5436 -1.3286 1.8135 14 6 7.0769 -1.3125 2.0422 15 6 7.5970 -0.6918 0.7199 16 1 7.5224 0.3951 0.7512 17 6 9.0397 -1.1259 0.4529 18 7 9.5461 -0.4337 -0.7347 19 6 10.8036 -0.6619 -1.1628 20 8 11.5174 -1.4414 -0.5633 21 6 11.3158 0.0386 -2.3635 22 6 12.6173 -0.1975 -2.7965 23 6 13.0848 0.4608 -3.9247 24 6 12.2380 1.3404 -4.5759 25 6 10.9489 1.5339 -4.0864 26 8 10.1136 2.3952 -4.7197 27 7 10.5308 0.8903 -3.0135 28 8 6.7090 -1.2337 -0.2844 29 1 -0.4850 -0.8369 0.0717 30 1 4.6494 0.1350 -1.2517 31 1 4.2841 0.6440 0.4526 32 1 4.2484 -3.1256 0.2734 33 1 4.6240 -2.4650 -1.3753 34 1 5.0768 -0.4647 2.2866 35 1 5.1076 -2.2531 2.1918 36 1 7.3357 -0.6840 2.8944 37 1 7.4606 -2.3242 2.1737 38 1 9.6602 -0.8734 1.3129 39 1 9.0703 -2.2027 0.2866 40 1 8.9763 0.1883 -1.2135 41 1 13.2542 -0.8876 -2.2630 42 1 14.0894 0.2936 -4.2844 43 1 12.5736 1.8716 -5.4543 44 1 10.1643 3.3040 -4.3931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053586566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:38 Heat of formation + Delta-G solvation = -10.769182 kcal Electronic energy + Delta-G solvation = -28137.613919 eV Core-core repulsion = 24058.004677 eV Total energy + Delta-G solvation = -4079.609242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13921 -40.26696 -39.41122 -37.38460 -36.93600 -34.80487 -33.14839 -32.32238 -31.99725 -30.94872 -29.47021 -27.22943 -25.51759 -25.23642 -23.83885 -23.36767 -21.55407 -21.27575 -20.98468 -19.24414 -19.10636 -18.14352 -17.46763 -16.98630 -16.68093 -16.50422 -15.88136 -15.78307 -15.69634 -15.31854 -14.71600 -14.63252 -14.24134 -13.78776 -13.71689 -13.54272 -13.16515 -13.06193 -12.91521 -12.67063 -12.33085 -12.20317 -12.05266 -11.58004 -11.42999 -11.25315 -11.06702 -10.72515 -10.68287 -10.49082 -10.40130 -10.33230 -9.87110 -9.82990 -9.50255 -9.23771 -9.20344 -8.87213 -8.80226 -7.16215 -6.33676 -3.24229 0.15543 0.63748 2.35114 2.77478 3.08359 3.38813 3.40895 3.44568 3.64229 3.81394 4.04757 4.36305 4.46360 4.53668 4.58046 4.58915 4.69378 4.84539 4.89554 4.92678 4.98821 5.00529 5.12816 5.35799 5.40677 5.42648 5.48687 5.56873 5.58453 5.79001 5.88829 5.90892 6.14928 6.18440 6.22537 6.24307 6.32315 6.34159 6.38555 6.57146 6.97062 7.06691 7.15339 7.32205 7.41169 7.92164 8.22217 8.96274 9.48315 10.34256 11.19382 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.002801 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.774370 B = 9992.623215 C =11350.631012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.024 4.024 3 Si 1.070 2.930 4 H -0.294 1.294 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.301 4.301 8 H 0.084 0.916 9 N -0.620 5.620 10 C 0.090 3.910 11 C 0.060 3.940 12 C 0.133 3.867 13 C -0.113 4.113 14 C -0.145 4.145 15 C 0.061 3.939 16 H 0.077 0.923 17 C 0.127 3.873 18 N -0.701 5.701 19 C 0.570 3.430 20 O -0.535 6.535 21 C 0.106 3.894 22 C -0.123 4.123 23 C -0.066 4.066 24 C -0.164 4.164 25 C 0.313 3.687 26 O -0.478 6.478 27 N -0.477 5.477 28 O -0.354 6.354 29 H 0.261 0.739 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.417 0.583 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.234 3.604 -3.442 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.223 4.223 3 Si 0.903 3.097 4 H -0.222 1.222 5 H -0.212 1.212 6 H -0.223 1.223 7 C -0.427 4.427 8 H 0.102 0.898 9 N -0.351 5.351 10 C -0.036 4.036 11 C 0.019 3.981 12 C 0.007 3.993 13 C -0.151 4.151 14 C -0.183 4.183 15 C 0.002 3.998 16 H 0.095 0.905 17 C 0.003 3.997 18 N -0.352 5.352 19 C 0.354 3.646 20 O -0.412 6.412 21 C -0.032 4.032 22 C -0.144 4.144 23 C -0.092 4.092 24 C -0.186 4.186 25 C 0.131 3.869 26 O -0.285 6.285 27 N -0.199 5.199 28 O -0.272 6.272 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.253 0.747 41 H 0.171 0.829 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 28.274 4.282 -3.277 28.784 hybrid contribution 0.588 -0.960 -0.294 1.164 sum 28.863 3.322 -3.571 29.272 Atomic orbital electron populations 1.70924 1.05274 1.29451 1.51897 1.25737 0.96444 1.00963 0.99163 0.83702 0.73834 0.75990 0.76220 1.22181 1.21212 1.22260 1.20089 0.78140 0.95880 1.48622 0.89801 1.45713 1.02015 1.01784 1.85547 1.23197 0.87563 0.93765 0.99067 1.23695 0.81779 0.99822 0.92803 1.22361 0.85853 0.92895 0.98203 1.22385 0.94630 1.04050 0.94030 1.23146 0.96213 1.01997 0.96965 1.23378 0.89339 0.98289 0.88758 0.90486 1.21531 0.92276 0.98247 0.87617 1.45821 1.13773 1.45755 1.29851 1.17811 0.82133 0.81578 0.83049 1.90793 1.57509 1.36019 1.56875 1.20897 0.91417 0.95365 0.95518 1.22161 0.95866 0.99660 0.96672 1.21567 1.00352 0.93616 0.93618 1.22372 0.93137 1.00895 1.02179 1.19100 0.86853 0.92294 0.88611 1.84839 1.63012 1.22371 1.58251 1.67025 1.37288 1.07653 1.07908 1.88796 1.17501 1.83583 1.37329 0.92885 0.93016 0.93081 0.93179 0.93649 0.90132 0.89898 0.90012 0.90149 0.89771 0.90081 0.74654 0.82878 0.83375 0.83532 0.73852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.64 13.70 55.49 0.76 -28.88 16 2 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 3 Si 1.07 27.07 25.13 -169.99 -4.27 22.79 16 4 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 5 H -0.29 -6.83 6.11 56.52 0.35 -6.49 16 6 H -0.29 -6.94 6.63 56.52 0.37 -6.57 16 7 C -0.30 -8.77 11.08 -15.06 -0.17 -8.93 16 8 H 0.08 2.55 8.05 -52.48 -0.42 2.13 16 9 N -0.62 -15.59 3.66 -184.61 -0.68 -16.26 16 10 C 0.09 1.97 5.22 -7.88 -0.04 1.93 16 11 C 0.06 1.09 1.66 -90.66 -0.15 0.94 16 12 C 0.13 2.78 8.20 -8.03 -0.07 2.71 16 13 C -0.11 -1.74 6.46 -25.49 -0.16 -1.91 16 14 C -0.14 -1.67 6.60 -24.57 -0.16 -1.83 16 15 C 0.06 0.76 3.38 -25.64 -0.09 0.67 16 16 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 17 C 0.13 1.44 5.41 -4.04 -0.02 1.42 16 18 N -0.70 -8.44 5.55 -61.15 -0.34 -8.77 16 19 C 0.57 7.20 7.81 -12.19 -0.10 7.10 16 20 O -0.54 -7.80 16.32 5.35 0.09 -7.72 16 21 C 0.11 1.17 6.75 -83.02 -0.56 0.61 16 22 C -0.12 -1.03 9.63 -39.05 -0.38 -1.40 16 23 C -0.07 -0.39 10.16 -39.35 -0.40 -0.79 16 24 C -0.16 -1.05 10.05 -39.16 -0.39 -1.45 16 25 C 0.31 2.86 7.74 -17.14 -0.13 2.73 16 26 O -0.48 -3.91 13.56 -18.70 -0.25 -4.16 16 27 N -0.48 -5.34 9.57 -9.87 -0.09 -5.44 16 28 O -0.35 -5.82 11.02 -35.23 -0.39 -6.21 16 29 H 0.26 8.17 8.73 -40.82 -0.36 7.82 16 30 H 0.05 1.17 7.69 -51.93 -0.40 0.77 16 31 H 0.05 1.13 4.49 -51.93 -0.23 0.90 16 32 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.30 7.82 -51.93 -0.41 0.89 16 35 H 0.08 1.27 7.81 -51.93 -0.41 0.86 16 36 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.42 5.03 7.80 -40.82 -0.32 4.71 16 41 H 0.15 1.15 7.63 -52.49 -0.40 0.75 16 42 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.40 1.24 9.06 45.56 0.41 1.65 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -36.67 365.88 -7.77 -44.44 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.20 Total: 3.72 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.91 Total: 0.98 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.35 Total: -59.35 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.55 Total: -18.09 kcal Atomic # 14 Polarization: 27.07 SS G_CDS: -4.27 Total: 22.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.67 -7.77 -44.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053586566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.672 kcal (2) G-P(sol) polarization free energy of solvation -36.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds