Wall clock time and date at job start Tue Mar 31 2020 19:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48499 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47209 * 300.00896 * 3 2 1 6 6 H 1.48500 * 109.46890 * 60.00403 * 3 2 1 7 7 C 1.38817 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99300 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00365 * 359.97438 * 7 2 1 10 10 C 1.47223 * 126.69933 * 0.02562 * 9 7 2 11 11 C 1.53797 * 106.35633 * 148.74565 * 10 9 7 12 12 H 1.08994 * 111.62946 * 257.32602 * 11 10 9 13 13 C 1.54188 * 109.12118 * 132.67067 * 11 10 9 14 14 C 1.54851 * 104.29635 * 223.08030 * 13 11 10 15 15 C 1.56234 * 103.17737 * 37.77208 * 14 13 11 16 16 C 1.54192 * 103.64473 * 322.65625 * 15 14 13 17 17 N 1.46493 * 111.61412 * 260.32958 * 16 15 14 18 18 C 1.34781 * 120.00012 * 298.58212 * 17 16 15 19 19 O 1.21603 * 119.99871 * 0.02562 * 18 17 16 20 20 C 1.47491 * 120.00128 * 180.02562 * 18 17 16 21 21 C 1.37804 * 126.77373 * 0.03015 * 20 18 17 22 22 O 1.33492 * 108.34104 * 179.73182 * 21 20 18 23 23 C 1.34883 * 109.88915 * 0.40623 * 22 21 20 24 24 C 1.46776 * 125.65488 * 179.85835 * 23 22 21 25 25 N 1.34773 * 119.99825 * 359.40996 * 24 23 22 26 26 O 1.21682 * 120.00062 * 179.68721 * 24 23 22 27 27 C 1.36052 * 108.69074 * 359.58903 * 23 22 21 28 28 C 1.47221 * 126.70144 * 179.97438 * 9 7 2 29 29 H 0.97003 * 119.99799 * 359.97438 * 1 2 3 30 30 H 1.08993 * 110.07563 * 267.97152 * 10 9 7 31 31 H 1.08997 * 110.07605 * 29.46592 * 10 9 7 32 32 H 1.09001 * 110.46825 * 341.78661 * 13 11 10 33 33 H 1.08997 * 110.46398 * 104.38322 * 13 11 10 34 34 H 1.08998 * 110.75896 * 156.44859 * 14 13 11 35 35 H 1.08994 * 110.76353 * 279.82798 * 14 13 11 36 36 H 1.08994 * 111.85685 * 203.64084 * 15 14 13 37 37 H 1.09003 * 109.69413 * 80.63119 * 15 14 13 38 38 H 0.96999 * 120.00438 * 118.58660 * 17 16 15 39 39 H 1.07999 * 125.82561 * 359.93534 * 21 20 18 40 40 H 0.96998 * 120.00530 * 0.02562 * 25 24 23 41 41 H 0.97001 * 120.00114 * 179.97438 * 25 24 23 42 42 H 1.07998 * 126.68633 * 180.26236 * 27 23 22 43 43 H 1.09003 * 110.07431 * 92.03270 * 28 9 7 44 44 H 1.08997 * 110.12658 * 330.50901 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1367 -2.5599 -0.0005 11 6 -0.4196 -3.8634 -0.7662 12 1 -0.7715 -3.6662 -1.7788 13 6 -1.4164 -4.7178 0.0423 14 6 -0.8501 -6.1561 -0.0502 15 6 0.6946 -5.9365 0.0318 16 6 0.9202 -4.6368 -0.7666 17 7 1.3854 -4.9136 -2.1278 18 6 2.5532 -5.5576 -2.3230 19 8 3.2204 -5.9093 -1.3691 20 6 3.0219 -5.8358 -3.6935 21 6 2.3825 -5.5020 -4.8677 22 8 3.1325 -5.9228 -5.8887 23 6 4.2423 -6.5315 -5.4226 24 6 5.3024 -7.1252 -6.2460 25 7 5.2061 -7.0988 -7.5900 26 8 6.2656 -7.6457 -5.7151 27 6 4.2190 -6.4986 -4.0627 28 6 1.9078 -3.7403 -0.0016 29 1 -0.4850 0.8401 0.0004 30 1 -0.5040 -2.6395 1.0225 31 1 -0.6123 -1.7183 -0.5041 32 1 -1.4480 -4.3866 1.0803 33 1 -2.4095 -4.6698 -0.4045 34 1 -1.2006 -6.7637 0.7841 35 1 -1.1155 -6.6154 -1.0023 36 1 1.2462 -6.7614 -0.4191 37 1 0.9917 -5.8014 1.0718 38 1 0.8531 -4.6334 -2.8887 39 1 1.4376 -4.9851 -4.9482 40 1 4.4365 -6.6871 -8.0133 41 1 5.9069 -7.4908 -8.1343 42 1 4.9672 -6.8991 -3.3947 43 1 2.0232 -4.0987 1.0213 44 1 2.8739 -3.7322 -0.5061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098957205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:20 Heat of formation + Delta-G solvation = -29.183394 kcal Electronic energy + Delta-G solvation = -28989.117333 eV Core-core repulsion = 24908.709590 eV Total energy + Delta-G solvation = -4080.407742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.06652 -40.16900 -39.49054 -38.00287 -34.51909 -34.24878 -33.59372 -33.16830 -31.44170 -30.37543 -29.36751 -27.75134 -24.76841 -24.74138 -24.03849 -23.49277 -21.29738 -20.92823 -20.28782 -19.59856 -18.90644 -18.57729 -17.45557 -16.94358 -16.77778 -16.62440 -15.98769 -15.67729 -14.96039 -14.89802 -14.69441 -14.63835 -14.13457 -14.04276 -13.53475 -13.45047 -13.39254 -12.87587 -12.66360 -12.46893 -11.65843 -11.53038 -11.24468 -11.03749 -10.84582 -10.83528 -10.74970 -10.61336 -10.31443 -10.25985 -10.22861 -10.18005 -9.94391 -9.77455 -9.67078 -9.47041 -9.06381 -8.76748 -8.60497 -6.87073 -5.65540 -3.09856 0.66768 1.45697 2.24912 2.78883 3.03701 3.37691 3.38498 3.44671 3.47004 3.48474 4.28747 4.38504 4.47143 4.71315 4.83656 4.99153 5.21523 5.24428 5.31384 5.46945 5.47886 5.66187 5.76063 5.80711 5.86911 5.92783 5.98079 6.03692 6.11389 6.18827 6.23674 6.37898 6.39098 6.44434 6.54206 6.66789 6.74556 6.84369 6.87639 7.13034 7.44096 7.61147 7.72517 7.72961 7.83321 8.37748 8.44000 9.20446 9.80655 10.48101 11.35411 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.003400 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.070293 B = 8232.255928 C = 9765.346652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.139 3.861 11 C -0.111 4.111 12 H 0.074 0.926 13 C -0.113 4.113 14 C -0.124 4.124 15 C -0.118 4.118 16 C 0.162 3.838 17 N -0.699 5.699 18 C 0.583 3.417 19 O -0.527 6.527 20 C -0.229 4.229 21 C 0.047 3.953 22 O -0.155 6.155 23 C -0.099 4.099 24 C 0.613 3.387 25 N -0.845 5.845 26 O -0.520 6.520 27 C -0.057 4.057 28 C 0.134 3.866 29 H 0.251 0.749 30 H 0.013 0.987 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.393 0.607 39 H 0.222 0.778 40 H 0.407 0.593 41 H 0.409 0.591 42 H 0.171 0.829 43 H 0.028 0.972 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 -13.956 -14.171 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.342 4.342 8 H 0.096 0.904 9 N -0.321 5.321 10 C 0.013 3.987 11 C -0.132 4.132 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.161 4.161 15 C -0.157 4.157 16 C 0.075 3.925 17 N -0.349 5.349 18 C 0.369 3.631 19 O -0.404 6.404 20 C -0.234 4.234 21 C -0.026 4.026 22 O -0.049 6.049 23 C -0.150 4.150 24 C 0.398 3.602 25 N -0.408 5.408 26 O -0.397 6.397 27 C -0.078 4.078 28 C 0.007 3.993 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.227 0.773 39 H 0.238 0.762 40 H 0.236 0.764 41 H 0.241 0.759 42 H 0.189 0.811 43 H 0.045 0.955 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.029 -14.204 -13.269 19.438 hybrid contribution 0.028 1.123 -0.678 1.312 sum 0.057 -13.081 -13.946 19.121 Atomic orbital electron populations 1.69601 1.04835 1.24493 1.58309 1.24749 0.95714 0.97622 1.02745 0.85988 0.78736 0.83544 0.77234 1.20540 1.21806 1.21725 1.19169 0.90534 0.82287 1.42177 0.90440 1.44595 1.01817 0.99743 1.85964 1.22086 0.85568 0.94411 0.96590 1.22997 0.92210 0.97959 0.99993 0.90800 1.22430 0.97835 0.94095 1.00741 1.22765 0.95544 0.97053 1.00778 1.22903 0.95417 0.96965 1.00421 1.21799 0.95439 0.94578 0.80681 1.45847 1.21698 1.58283 1.09029 1.17137 0.81105 0.78177 0.86705 1.90804 1.55443 1.52214 1.41975 1.20910 0.98635 1.09168 0.94649 1.25142 0.96422 0.97196 0.83880 1.83876 1.28023 1.57116 1.35913 1.21750 0.90729 1.08919 0.93576 1.16477 0.83512 0.78182 0.82026 1.43666 1.27892 1.62697 1.06546 1.90955 1.31051 1.44997 1.72674 1.21920 0.96807 0.95859 0.93236 1.21690 0.95288 0.85913 0.96399 0.93776 0.96958 0.85954 0.91006 0.92004 0.92012 0.92276 0.91066 0.90766 0.77267 0.76206 0.76387 0.75904 0.81145 0.95480 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.13 10.08 55.49 0.56 -25.57 16 2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.21 -5.95 10.34 -15.06 -0.16 -6.10 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.60 -15.18 3.39 -171.12 -0.58 -15.76 16 10 C 0.14 3.21 5.77 -3.23 -0.02 3.19 16 11 C -0.11 -1.94 3.67 -88.69 -0.33 -2.26 16 12 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 13 C -0.11 -1.66 6.38 -25.13 -0.16 -1.82 16 14 C -0.12 -1.63 6.92 -24.02 -0.17 -1.80 16 15 C -0.12 -1.87 5.75 -24.37 -0.14 -2.01 16 16 C 0.16 2.82 0.94 -129.90 -0.12 2.70 16 17 N -0.70 -10.43 5.22 -46.88 -0.24 -10.67 16 18 C 0.58 9.29 6.79 -12.49 -0.08 9.20 16 19 O -0.53 -10.30 14.44 5.27 0.08 -10.22 16 20 C -0.23 -2.94 6.16 -104.95 -0.65 -3.58 16 21 C 0.05 0.42 11.64 30.57 0.36 0.78 16 22 O -0.16 -1.42 10.33 6.20 0.06 -1.35 16 23 C -0.10 -1.10 7.09 -36.92 -0.26 -1.36 16 24 C 0.61 6.58 8.06 -12.81 -0.10 6.48 16 25 N -0.84 -5.15 8.87 30.28 0.27 -4.88 16 26 O -0.52 -7.50 17.68 5.20 0.09 -7.40 16 27 C -0.06 -0.75 10.41 -39.03 -0.41 -1.15 16 28 C 0.13 2.97 6.00 -3.25 -0.02 2.96 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.01 0.31 7.12 -51.93 -0.37 -0.06 16 31 H 0.12 3.19 5.44 -51.93 -0.28 2.90 16 32 H 0.07 1.13 7.17 -51.93 -0.37 0.76 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.15 6.69 -51.93 -0.35 0.81 16 37 H 0.07 1.24 7.18 -51.93 -0.37 0.86 16 38 H 0.39 4.64 7.23 -40.82 -0.29 4.34 16 39 H 0.22 1.10 7.46 -52.49 -0.39 0.70 16 40 H 0.41 1.56 8.57 -40.82 -0.35 1.21 16 41 H 0.41 1.78 8.93 -40.82 -0.36 1.42 16 42 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 44 H 0.05 1.17 6.73 -51.93 -0.35 0.82 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -34.98 358.27 -7.24 -42.22 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.50 Total: 6.52 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -2.35 Total: 4.74 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.00 Total: -56.87 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.23 Total: -18.98 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.98 -7.24 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098957205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.039 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds