Wall clock time and date at job start Tue Mar 31 2020 19:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48499 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47209 * 300.00896 * 3 2 1 6 6 H 1.48500 * 109.46890 * 60.00403 * 3 2 1 7 7 C 1.38817 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99300 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00365 * 359.97438 * 7 2 1 10 10 C 1.47223 * 126.69933 * 0.02562 * 9 7 2 11 11 C 1.53797 * 106.35633 * 148.74565 * 10 9 7 12 12 H 1.08994 * 111.62946 * 257.32602 * 11 10 9 13 13 C 1.54188 * 109.12118 * 132.67067 * 11 10 9 14 14 C 1.54851 * 104.29635 * 223.08030 * 13 11 10 15 15 C 1.56234 * 103.17737 * 37.77208 * 14 13 11 16 16 C 1.54192 * 103.64473 * 322.65625 * 15 14 13 17 17 N 1.46493 * 111.61412 * 260.32958 * 16 15 14 18 18 C 1.34781 * 120.00012 * 298.58212 * 17 16 15 19 19 O 1.21603 * 119.99871 * 0.02562 * 18 17 16 20 20 C 1.47491 * 120.00128 * 180.02562 * 18 17 16 21 21 C 1.37804 * 126.77373 * 0.03015 * 20 18 17 22 22 O 1.33492 * 108.34104 * 179.73182 * 21 20 18 23 23 C 1.34883 * 109.88915 * 0.40623 * 22 21 20 24 24 C 1.46776 * 125.65488 * 179.85835 * 23 22 21 25 25 N 1.34773 * 119.99825 * 359.40996 * 24 23 22 26 26 O 1.21682 * 120.00062 * 179.68721 * 24 23 22 27 27 C 1.36052 * 108.69074 * 359.58903 * 23 22 21 28 28 C 1.47221 * 126.70144 * 179.97438 * 9 7 2 29 29 H 0.97003 * 119.99799 * 359.97438 * 1 2 3 30 30 H 1.08993 * 110.07563 * 267.97152 * 10 9 7 31 31 H 1.08997 * 110.07605 * 29.46592 * 10 9 7 32 32 H 1.09001 * 110.46825 * 341.78661 * 13 11 10 33 33 H 1.08997 * 110.46398 * 104.38322 * 13 11 10 34 34 H 1.08998 * 110.75896 * 156.44859 * 14 13 11 35 35 H 1.08994 * 110.76353 * 279.82798 * 14 13 11 36 36 H 1.08994 * 111.85685 * 203.64084 * 15 14 13 37 37 H 1.09003 * 109.69413 * 80.63119 * 15 14 13 38 38 H 0.96999 * 120.00438 * 118.58660 * 17 16 15 39 39 H 1.07999 * 125.82561 * 359.93534 * 21 20 18 40 40 H 0.96998 * 120.00530 * 0.02562 * 25 24 23 41 41 H 0.97001 * 120.00114 * 179.97438 * 25 24 23 42 42 H 1.07998 * 126.68633 * 180.26236 * 27 23 22 43 43 H 1.09003 * 110.07431 * 92.03270 * 28 9 7 44 44 H 1.08997 * 110.12658 * 330.50901 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1367 -2.5599 -0.0005 11 6 -0.4196 -3.8634 -0.7662 12 1 -0.7715 -3.6662 -1.7788 13 6 -1.4164 -4.7178 0.0423 14 6 -0.8501 -6.1561 -0.0502 15 6 0.6946 -5.9365 0.0318 16 6 0.9202 -4.6368 -0.7666 17 7 1.3854 -4.9136 -2.1278 18 6 2.5532 -5.5576 -2.3230 19 8 3.2204 -5.9093 -1.3691 20 6 3.0219 -5.8358 -3.6935 21 6 2.3825 -5.5020 -4.8677 22 8 3.1325 -5.9228 -5.8887 23 6 4.2423 -6.5315 -5.4226 24 6 5.3024 -7.1252 -6.2460 25 7 5.2061 -7.0988 -7.5900 26 8 6.2656 -7.6457 -5.7151 27 6 4.2190 -6.4986 -4.0627 28 6 1.9078 -3.7403 -0.0016 29 1 -0.4850 0.8401 0.0004 30 1 -0.5040 -2.6395 1.0225 31 1 -0.6123 -1.7183 -0.5041 32 1 -1.4480 -4.3866 1.0803 33 1 -2.4095 -4.6698 -0.4045 34 1 -1.2006 -6.7637 0.7841 35 1 -1.1155 -6.6154 -1.0023 36 1 1.2462 -6.7614 -0.4191 37 1 0.9917 -5.8014 1.0718 38 1 0.8531 -4.6334 -2.8887 39 1 1.4376 -4.9851 -4.9482 40 1 4.4365 -6.6871 -8.0133 41 1 5.9069 -7.4908 -8.1343 42 1 4.9672 -6.8991 -3.3947 43 1 2.0232 -4.0987 1.0213 44 1 2.8739 -3.7322 -0.5061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098957205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:19 Heat of formation + Delta-G solvation = -57.080261 kcal Electronic energy + Delta-G solvation = -28990.327032 eV Core-core repulsion = 24908.709590 eV Total energy + Delta-G solvation = -4081.617441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.93063 -41.55733 -40.35558 -39.39515 -36.30443 -35.06924 -34.78408 -34.14006 -33.37667 -31.41791 -30.76375 -29.36897 -26.47357 -26.31246 -24.86287 -24.75404 -22.58066 -22.01825 -21.76720 -20.61454 -20.27589 -19.67959 -18.91104 -18.10503 -17.62042 -17.42298 -17.31211 -16.96845 -16.81556 -16.24262 -15.71345 -15.66126 -15.49574 -15.36175 -15.07201 -14.95164 -14.33629 -14.28337 -13.94835 -13.78255 -13.40470 -13.18509 -12.96938 -12.81820 -12.49086 -12.24824 -12.03324 -11.84235 -11.78908 -11.75661 -11.65307 -11.40168 -11.23516 -11.21930 -10.97110 -10.90061 -10.78654 -10.08243 -9.86409 -8.91447 -7.76204 -5.24366 -0.15802 0.44932 1.41765 1.44952 1.46190 1.56341 1.91274 2.03136 2.31389 2.46917 2.50489 3.29149 3.36082 3.48592 3.58796 3.64955 3.86806 3.89173 4.03657 4.26768 4.33923 4.38506 4.46005 4.52060 4.62283 4.70552 4.76416 4.83726 4.85075 4.92183 4.98581 5.07731 5.14607 5.25276 5.31053 5.42495 5.43196 5.52937 5.61390 5.71486 5.72636 5.81811 6.24173 6.37075 6.59007 7.07085 7.10873 7.24645 7.74672 8.42301 9.21389 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.003400 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.070293 B = 8232.255928 C = 9765.346652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.057 4.057 3 Si 0.977 3.023 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.066 0.934 9 N -0.617 5.617 10 C 0.142 3.858 11 C -0.099 4.099 12 H 0.098 0.902 13 C -0.108 4.108 14 C -0.107 4.107 15 C -0.116 4.116 16 C 0.173 3.827 17 N -0.689 5.689 18 C 0.583 3.417 19 O -0.575 6.575 20 C -0.263 4.263 21 C 0.092 3.908 22 O -0.136 6.136 23 C -0.093 4.093 24 C 0.611 3.389 25 N -0.816 5.816 26 O -0.566 6.566 27 C -0.082 4.082 28 C 0.135 3.865 29 H 0.250 0.750 30 H -0.012 1.012 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.412 0.588 39 H 0.271 0.729 40 H 0.422 0.578 41 H 0.421 0.579 42 H 0.150 0.850 43 H 0.010 0.990 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 -14.403 -17.133 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.250 4.250 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.367 4.367 8 H 0.084 0.916 9 N -0.341 5.341 10 C 0.017 3.983 11 C -0.119 4.119 12 H 0.116 0.884 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.155 4.155 16 C 0.085 3.915 17 N -0.340 5.340 18 C 0.371 3.629 19 O -0.455 6.455 20 C -0.268 4.268 21 C 0.018 3.982 22 O -0.029 6.029 23 C -0.145 4.145 24 C 0.396 3.604 25 N -0.380 5.380 26 O -0.447 6.447 27 C -0.104 4.104 28 C 0.008 3.992 29 H 0.060 0.940 30 H 0.006 0.994 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.250 0.750 39 H 0.286 0.714 40 H 0.254 0.746 41 H 0.255 0.745 42 H 0.168 0.832 43 H 0.027 0.973 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.056 -14.661 -16.320 22.035 hybrid contribution 0.696 1.310 0.242 1.503 sum -1.361 -13.351 -16.078 20.943 Atomic orbital electron populations 1.69833 1.05749 1.24971 1.58377 1.25483 0.96659 1.00337 1.02499 0.85037 0.77690 0.79605 0.77129 1.20201 1.20995 1.21749 1.19363 0.90493 0.83882 1.42968 0.91558 1.44838 1.03023 1.00141 1.86085 1.21951 0.84015 0.96604 0.95740 1.22884 0.92915 0.95244 1.00840 0.88383 1.22395 0.98490 0.94258 0.99471 1.22709 0.92411 0.96330 1.03014 1.22848 0.98030 0.95694 0.98965 1.21514 0.93804 0.94418 0.81764 1.45633 1.21817 1.57939 1.08586 1.17537 0.80622 0.77176 0.87547 1.90779 1.56732 1.54162 1.43832 1.20621 0.99796 1.12178 0.94199 1.25928 0.96378 0.93767 0.82088 1.83928 1.27210 1.56318 1.35423 1.21627 0.91291 1.08771 0.92790 1.16493 0.82815 0.77913 0.83193 1.43464 1.28499 1.61133 1.04915 1.90938 1.32750 1.47217 1.73749 1.21869 0.97162 0.97099 0.94241 1.21750 0.95623 0.85765 0.96081 0.93982 0.99404 0.88594 0.92683 0.89025 0.90147 0.89686 0.91399 0.92558 0.75045 0.71404 0.74608 0.74549 0.83247 0.97269 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.98 10.08 21.65 0.22 -53.76 16 2 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 3 Si 0.98 45.71 29.55 68.60 2.03 47.73 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.73 10.34 84.03 0.87 -12.86 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.62 -32.46 3.39 -695.29 -2.36 -34.82 16 10 C 0.14 6.69 5.77 86.51 0.50 7.19 16 11 C -0.10 -3.29 3.67 -9.54 -0.03 -3.33 16 12 H 0.10 2.82 7.69 -2.39 -0.02 2.80 16 13 C -0.11 -2.89 6.38 31.63 0.20 -2.69 16 14 C -0.11 -2.47 6.92 32.35 0.22 -2.24 16 15 C -0.12 -3.60 5.75 32.12 0.18 -3.42 16 16 C 0.17 5.95 0.94 4.85 0.00 5.96 16 17 N -0.69 -19.52 5.22 -420.47 -2.20 -21.72 16 18 C 0.58 18.52 6.79 86.68 0.59 19.11 16 19 O -0.57 -23.51 14.44 -4.04 -0.06 -23.57 16 20 C -0.26 -6.46 6.16 -20.08 -0.12 -6.59 16 21 C 0.09 1.30 11.64 67.72 0.79 2.09 16 22 O -0.14 -2.00 10.33 -0.72 -0.01 -2.00 16 23 C -0.09 -1.95 7.09 24.00 0.17 -1.78 16 24 C 0.61 12.50 8.06 86.48 0.70 13.20 16 25 N -0.82 -7.97 8.87 -176.33 -1.56 -9.54 16 26 O -0.57 -16.58 17.68 -4.29 -0.08 -16.66 16 27 C -0.08 -2.19 10.41 22.62 0.24 -1.95 16 28 C 0.13 6.24 6.00 86.50 0.52 6.76 16 29 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 30 H -0.01 -0.61 7.12 -2.39 -0.02 -0.62 16 31 H 0.10 5.08 5.44 -2.39 -0.01 5.07 16 32 H 0.05 1.67 7.17 -2.39 -0.02 1.66 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.17 6.69 -2.39 -0.02 2.15 16 37 H 0.06 1.92 7.18 -2.39 -0.02 1.90 16 38 H 0.41 8.28 7.23 -92.71 -0.67 7.61 16 39 H 0.27 0.99 7.46 -2.91 -0.02 0.97 16 40 H 0.42 1.77 8.57 -92.71 -0.79 0.98 16 41 H 0.42 2.69 8.93 -92.71 -0.83 1.86 16 42 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.01 0.47 7.13 -2.39 -0.02 0.45 16 44 H 0.02 1.24 6.73 -2.39 -0.02 1.23 16 Total: -1.00 -82.16 358.27 0.08 -82.08 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -1.20 Total: 15.55 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 5.29 Total: 16.70 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -5.90 Total: -119.84 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.14 Total: -42.23 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -82.16 0.08 -82.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098957205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.004 kcal (2) G-P(sol) polarization free energy of solvation -82.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds