Wall clock time and date at job start Tue Mar 31 2020 18:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46973 * 171.38182 * 3 2 1 5 5 N 1.46501 * 109.46937 * 179.97438 * 4 3 2 6 6 C 1.46506 * 120.00098 * 90.00021 * 5 4 3 7 7 C 1.50699 * 109.46928 * 269.99904 * 6 5 4 8 8 H 1.08003 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99865 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99749 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 120.00236 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47160 * 89.99730 * 11 9 7 13 13 H 1.48503 * 109.47061 * 209.99752 * 11 9 7 14 14 H 1.48500 * 109.46598 * 329.99398 * 11 9 7 15 15 C 1.34771 * 120.00308 * 269.99876 * 5 4 3 16 16 O 1.21281 * 120.00246 * 180.02562 * 15 5 4 17 17 C 1.50706 * 120.00094 * 359.97438 * 15 5 4 18 18 H 1.09003 * 109.45768 * 40.01996 * 17 15 5 19 19 C 1.53040 * 109.46142 * 280.05953 * 17 15 5 20 20 C 1.53121 * 109.27705 * 180.80086 * 19 17 15 21 21 C 1.53125 * 109.15862 * 57.65091 * 20 19 17 22 22 H 1.09000 * 109.50311 * 62.29032 * 21 20 19 23 23 C 1.52998 * 109.53485 * 182.38579 * 21 20 19 24 24 F 1.39895 * 109.47370 * 179.82353 * 23 21 20 25 25 F 1.39900 * 109.47103 * 299.82710 * 23 21 20 26 26 F 1.39905 * 109.47290 * 59.82218 * 23 21 20 27 27 C 1.53033 * 109.27940 * 302.34457 * 21 20 19 28 28 N 1.46843 * 109.52286 * 59.18286 * 27 21 20 29 29 H 1.08999 * 109.47598 * 51.37804 * 3 2 1 30 30 H 1.09000 * 109.47000 * 291.37854 * 3 2 1 31 31 H 1.09000 * 109.47411 * 59.99951 * 4 3 2 32 32 H 1.09000 * 109.46990 * 299.99678 * 4 3 2 33 33 H 1.09004 * 109.47073 * 29.99732 * 6 5 4 34 34 H 1.09000 * 109.47212 * 149.99814 * 6 5 4 35 35 H 0.97001 * 119.99269 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.49873 * 300.73568 * 19 17 15 37 37 H 1.09000 * 109.50724 * 60.85916 * 19 17 15 38 38 H 1.08994 * 109.52214 * 297.74901 * 20 19 17 39 39 H 1.09000 * 109.57631 * 177.58519 * 20 19 17 40 40 H 1.09004 * 109.46412 * 299.16538 * 27 21 20 41 41 H 1.09000 * 109.45551 * 179.19018 * 27 21 20 42 42 H 1.00894 * 111.00575 * 62.35167 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4271 -0.2162 5 7 4.5823 1.4278 -0.2155 6 6 5.3155 1.2379 -1.4696 7 6 5.5675 -0.2320 -1.6865 8 1 5.2163 -0.9526 -0.9627 9 6 6.2455 -0.6569 -2.8093 10 7 6.4659 -1.9397 -2.9982 11 14 6.8524 0.5895 -4.0614 12 1 8.2255 1.0250 -3.7009 13 1 6.8681 -0.0314 -5.4103 14 1 5.9458 1.7656 -4.0685 15 6 5.2557 1.6032 0.9386 16 8 6.4685 1.6043 0.9391 17 6 4.5016 1.7992 2.2287 18 1 3.6385 1.1338 2.2494 19 6 4.0282 3.2512 2.3270 20 6 3.2800 3.4507 3.6480 21 6 4.2047 3.0783 4.8104 22 1 5.0690 3.7424 4.8150 23 6 3.4466 3.2176 6.1320 24 9 4.2913 2.8732 7.1927 25 9 3.0188 4.5405 6.2871 26 9 2.3364 2.3663 6.1248 27 6 4.6729 1.6313 4.6400 28 7 5.3832 1.4926 3.3623 29 1 2.9717 -0.6406 -0.8029 30 1 2.9715 -0.3738 0.9570 31 1 2.7537 2.0683 0.5868 32 1 2.7538 1.8015 -1.1731 33 1 4.7265 1.6316 -2.2981 34 1 6.2676 1.7659 -1.4175 35 1 6.9432 -2.2385 -3.7880 36 1 4.8898 3.9180 2.2925 37 1 3.3614 3.4739 1.4940 38 1 2.3968 2.8123 3.6664 39 1 2.9778 4.4936 3.7428 40 1 3.8091 0.9666 4.6494 41 1 5.3429 1.3678 5.4584 42 1 6.2102 2.0703 3.3437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160750935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:07 Heat of formation + Delta-G solvation = -163.838176 kcal Electronic energy + Delta-G solvation = -29742.307900 eV Core-core repulsion = 25114.204348 eV Total energy + Delta-G solvation = -4628.103552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.40519 -47.88762 -47.86424 -40.31979 -38.20749 -36.80352 -35.38760 -33.02378 -32.57323 -31.82115 -30.95368 -28.32063 -26.37806 -24.37866 -24.07781 -23.16525 -21.99820 -20.93582 -18.93668 -18.70292 -18.56752 -17.84114 -17.65411 -16.91921 -16.68442 -16.28765 -15.50732 -15.06262 -14.81962 -14.63115 -14.54083 -14.47231 -14.32248 -14.26180 -14.03219 -14.01506 -13.87083 -13.66595 -13.49334 -13.12348 -12.80698 -12.61389 -12.53471 -12.42772 -12.17958 -12.00556 -11.73343 -11.65401 -11.60347 -11.36621 -11.17603 -11.05535 -10.73300 -10.58937 -10.23176 -9.60440 -9.23114 -8.65756 -8.61217 -7.98745 -6.15753 -4.15683 2.42146 2.76918 2.91304 3.08838 3.23647 3.28587 3.31139 3.35833 3.52087 3.63027 3.68487 4.04802 4.22259 4.31817 4.33137 4.49338 4.55647 4.66719 4.78204 4.86739 5.02675 5.05383 5.15677 5.20241 5.22513 5.33982 5.41642 5.49156 5.54380 5.62538 5.78570 5.87320 6.18270 6.47750 6.67830 6.82985 7.11940 7.16815 7.51203 7.66512 7.99442 8.36408 8.73907 8.87037 9.44015 10.96896 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.003302 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.742953 B = 8476.959711 C = 9430.003379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.218 3.782 3 C -0.056 4.056 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.215 3.785 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.075 3.925 10 N -0.893 5.893 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.520 3.480 16 O -0.520 6.520 17 C 0.062 3.938 18 H 0.105 0.895 19 C -0.147 4.147 20 C -0.117 4.117 21 C -0.176 4.176 22 H 0.115 0.885 23 C 0.458 3.542 24 F -0.183 7.183 25 F -0.186 7.186 26 F -0.181 7.181 27 C 0.064 3.936 28 N -0.652 5.652 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 12.161 15.130 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.099 4.099 3 C -0.097 4.097 4 C -0.007 4.007 5 N -0.323 5.323 6 C 0.094 3.906 7 C -0.571 4.571 8 H 0.098 0.902 9 C -0.128 4.128 10 N -0.531 5.531 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.306 3.694 16 O -0.395 6.395 17 C -0.051 4.051 18 H 0.123 0.877 19 C -0.186 4.186 20 C -0.154 4.154 21 C -0.197 4.197 22 H 0.133 0.867 23 C 0.403 3.597 24 F -0.164 7.164 25 F -0.167 7.167 26 F -0.162 7.162 27 C -0.067 4.067 28 N -0.282 5.282 29 H 0.153 0.847 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.614 11.329 14.945 20.240 hybrid contribution 0.549 1.408 -0.414 1.567 sum -7.065 12.737 14.531 20.574 Atomic orbital electron populations 1.81192 1.13088 1.08878 1.09747 1.29265 0.95210 0.92925 0.92530 1.20017 0.80806 1.01591 1.07279 1.21404 0.81655 0.94126 1.03549 1.47864 1.04960 1.70500 1.08926 1.19763 0.92521 0.98360 0.79914 1.21309 1.37479 0.90497 1.07823 0.90221 1.24841 0.95159 0.95037 0.97747 1.69887 1.41070 1.13856 1.28301 0.86906 0.80159 0.81828 0.81094 1.19959 1.21150 1.19077 1.19998 0.87953 0.77282 0.84212 1.90692 1.13640 1.49561 1.85614 1.21736 0.96562 0.95978 0.90842 0.87706 1.22248 1.01578 0.97200 0.97588 1.21647 0.97933 1.03220 0.92626 1.23454 1.00637 1.04662 0.90980 0.86664 1.20532 0.78171 0.73505 0.87481 1.93186 1.70887 1.92040 1.60320 1.93179 1.90696 1.36444 1.96385 1.93183 1.55205 1.71005 1.96854 1.22184 1.00254 0.90881 0.93353 1.60341 1.07927 1.60297 0.99616 0.84670 0.87471 0.90578 0.89336 0.94967 0.94342 0.92485 0.90518 0.89437 0.90046 0.90095 0.89322 0.88867 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.85 18.54 42.16 0.78 -6.06 16 2 C 0.22 2.81 15.43 -20.76 -0.32 2.49 16 3 C -0.06 -0.67 5.89 -29.52 -0.17 -0.84 16 4 C 0.12 1.40 5.00 -4.04 -0.02 1.38 16 5 N -0.59 -9.65 2.46 -175.05 -0.43 -10.08 16 6 C 0.21 4.49 4.27 -5.19 -0.02 4.46 16 7 C -0.53 -13.45 9.48 -34.44 -0.33 -13.78 16 8 H 0.08 2.17 7.67 -52.48 -0.40 1.76 16 9 C 0.08 2.01 5.47 -17.82 -0.10 1.92 16 10 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 11 Si 0.87 20.03 27.47 -169.99 -4.67 15.36 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -5.67 6.54 56.52 0.37 -5.30 16 15 C 0.52 8.54 6.92 -10.99 -0.08 8.47 16 16 O -0.52 -10.94 15.77 5.56 0.09 -10.85 16 17 C 0.06 0.71 1.98 -68.87 -0.14 0.57 16 18 H 0.11 1.07 6.12 -51.93 -0.32 0.75 16 19 C -0.15 -1.26 5.08 -26.65 -0.14 -1.39 16 20 C -0.12 -0.84 5.04 -26.60 -0.13 -0.97 16 21 C -0.18 -1.30 2.31 -90.54 -0.21 -1.50 16 22 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 23 C 0.46 3.88 2.69 37.16 0.10 3.98 16 24 F -0.18 -1.68 16.81 2.25 0.04 -1.64 16 25 F -0.19 -1.70 16.86 2.25 0.04 -1.66 16 26 F -0.18 -1.69 16.23 2.25 0.04 -1.66 16 27 C 0.06 0.54 5.59 -3.84 -0.02 0.52 16 28 N -0.65 -7.40 6.28 -107.98 -0.68 -8.08 16 29 H 0.14 1.96 7.26 -51.93 -0.38 1.58 16 30 H 0.11 1.17 7.16 -51.93 -0.37 0.80 16 31 H 0.08 0.67 4.75 -51.93 -0.25 0.43 16 32 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 33 H 0.03 0.64 6.95 -51.93 -0.36 0.28 16 34 H 0.04 0.88 6.85 -51.93 -0.36 0.53 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.68 6.32 -51.93 -0.33 0.35 16 38 H 0.08 0.58 7.74 -51.93 -0.40 0.18 16 39 H 0.08 0.53 7.88 -51.93 -0.41 0.12 16 40 H 0.09 0.75 7.78 -51.93 -0.40 0.35 16 41 H 0.09 0.74 7.83 -51.93 -0.41 0.33 16 42 H 0.36 4.14 8.31 -39.29 -0.33 3.81 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -31.77 355.39 -5.37 -37.14 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.13 Total: 1.87 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.57 Total: 5.30 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.45 Total: -49.21 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.11 Total: -4.96 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.77 -5.37 -37.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160750935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.695 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds