Wall clock time and date at job start Tue Mar 31 2020 17:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48501 * 109.47371 * 269.99937 * 3 2 1 5 5 H 1.48505 * 109.47147 * 30.00145 * 3 2 1 6 6 H 1.48499 * 109.47136 * 149.99706 * 3 2 1 7 7 C 1.38950 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00402 * 179.97438 * 7 2 1 10 10 C 1.34769 * 120.00233 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00245 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00197 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47320 * 180.02562 * 12 10 9 14 14 C 1.47841 * 111.00076 * 69.15730 * 13 12 10 15 15 C 1.54907 * 104.79973 * 146.36293 * 14 13 12 16 16 H 1.09006 * 110.98781 * 81.01819 * 15 14 13 17 17 O 1.42892 * 110.99377 * 204.83703 * 15 14 13 18 18 C 1.55140 * 101.65164 * 322.93164 * 15 14 13 19 19 H 1.08995 * 110.85327 * 277.19954 * 18 15 14 20 20 N 1.46498 * 110.70615 * 154.03164 * 18 15 14 21 21 C 1.34777 * 119.99828 * 159.66756 * 20 18 15 22 22 O 1.21553 * 119.99924 * 0.28083 * 21 20 18 23 23 C 1.47851 * 120.00199 * 180.27782 * 21 20 18 24 24 C 1.39578 * 120.13798 * 359.72647 * 23 21 20 25 25 C 1.37958 * 119.84785 * 179.79166 * 24 23 21 26 26 C 1.38364 * 120.14409 * 0.48599 * 25 24 23 27 27 C 1.38360 * 120.29478 * 359.74180 * 26 25 24 28 28 C 1.37959 * 120.14465 * 0.02790 * 27 26 25 29 29 C 1.47441 * 110.99953 * 189.99702 * 13 12 10 30 30 H 0.96999 * 119.99589 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99696 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.47191 * 59.99671 * 12 10 9 33 33 H 1.09005 * 109.46689 * 300.00218 * 12 10 9 34 34 H 1.09004 * 110.37555 * 265.19121 * 14 13 12 35 35 H 1.09002 * 110.37497 * 27.53333 * 14 13 12 36 36 H 0.96701 * 114.00617 * 292.26919 * 17 15 14 37 37 H 0.97001 * 120.00384 * 339.95203 * 20 18 15 38 38 H 1.07999 * 120.07726 * 359.97438 * 24 23 21 39 39 H 1.07998 * 119.92862 * 180.22691 * 25 24 23 40 40 H 1.07998 * 119.85357 * 179.72620 * 26 25 24 41 41 H 1.07994 * 119.92953 * 179.97438 * 27 26 25 42 42 H 1.07997 * 120.07790 * 179.97438 * 28 27 26 43 43 H 1.09006 * 109.88493 * 117.33930 * 29 13 12 44 44 H 1.08996 * 110.02834 * 356.22966 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 5.7640 -4.4182 -1.2908 15 6 6.9563 -5.3817 -1.5140 16 1 6.8237 -6.3044 -0.9489 17 8 7.1387 -5.6569 -2.9043 18 6 8.1398 -4.5510 -0.9519 19 1 8.5085 -3.8470 -1.6978 20 7 9.2186 -5.4303 -0.4944 21 6 10.4696 -4.9476 -0.3587 22 8 10.7018 -3.7815 -0.6110 23 6 11.5596 -5.8365 0.0972 24 6 11.2951 -7.1746 0.3933 25 6 12.3175 -7.9998 0.8141 26 6 13.6007 -7.5010 0.9525 27 6 13.8686 -6.1744 0.6651 28 6 12.8562 -5.3397 0.2389 29 6 7.5046 -3.8019 0.2383 30 1 -0.4849 0.8401 -0.0004 31 1 3.8649 -0.3633 -0.0004 32 1 5.9241 -1.8567 0.8900 33 1 5.9240 -1.8567 -0.8900 34 1 4.8302 -4.9774 -1.2312 35 1 5.7158 -3.6819 -2.0931 36 1 6.4238 -6.1740 -3.3000 37 1 9.0334 -6.3609 -0.2930 38 1 10.2930 -7.5639 0.2905 39 1 12.1151 -9.0363 1.0401 40 1 14.3967 -8.1501 1.2864 41 1 14.8722 -5.7912 0.7755 42 1 13.0665 -4.3042 0.0153 43 1 7.7111 -4.3364 1.1656 44 1 7.9058 -2.7902 0.2965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190676138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:13 Heat of formation + Delta-G solvation = -69.075986 kcal Electronic energy + Delta-G solvation = -27720.032657 eV Core-core repulsion = 23637.895042 eV Total energy + Delta-G solvation = -4082.137615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70971 -39.59543 -38.49486 -37.87329 -35.94492 -34.70649 -33.88245 -31.89370 -31.65520 -31.36168 -30.06510 -28.21041 -26.68331 -24.46160 -23.80660 -22.92171 -21.59392 -21.22183 -20.54773 -19.38396 -18.56666 -18.28349 -17.64103 -16.71064 -16.52989 -16.00770 -15.57212 -15.33806 -15.08595 -14.95483 -14.81902 -14.67889 -14.26280 -14.01331 -13.68753 -13.49410 -13.27134 -13.04387 -12.99862 -12.85452 -12.56074 -12.32088 -12.12544 -12.07556 -11.86888 -11.54732 -11.46589 -11.11826 -10.78078 -10.58755 -10.38215 -10.09779 -9.97555 -9.56447 -9.53255 -9.44229 -9.31953 -8.61838 -8.18366 -8.04031 -6.31010 -3.82355 0.44456 0.92007 2.55023 2.75925 3.04006 3.07923 3.16064 3.48535 3.60810 3.73870 4.10174 4.13894 4.22218 4.35069 4.41861 4.48731 4.63185 4.71363 4.81597 4.90607 4.92265 5.04282 5.16975 5.20143 5.23483 5.34502 5.49270 5.52907 5.63840 5.70609 5.77833 5.82941 5.86421 5.94561 5.94779 5.99856 6.12133 6.24605 6.43013 6.97114 7.00941 7.17788 7.41357 7.58255 7.90711 8.13981 8.60242 8.95146 9.42616 9.83176 10.82032 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023808 B = 0.002146 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.799306 B =13046.434741 C =13616.442226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.454 3.546 11 O -0.561 6.561 12 C 0.036 3.964 13 N -0.497 5.497 14 C 0.024 3.976 15 C 0.086 3.914 16 H 0.079 0.921 17 O -0.559 6.559 18 C 0.134 3.866 19 H 0.105 0.895 20 N -0.711 5.711 21 C 0.560 3.440 22 O -0.534 6.534 23 C -0.133 4.133 24 C -0.086 4.086 25 C -0.128 4.128 26 C -0.096 4.096 27 C -0.128 4.128 28 C -0.060 4.060 29 C 0.033 3.967 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.385 0.615 37 H 0.401 0.599 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.085 0.915 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.553 -14.388 -0.240 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.239 3.761 11 O -0.442 6.442 12 C -0.096 4.096 13 N -0.222 5.222 14 C -0.104 4.104 15 C 0.026 3.974 16 H 0.097 0.903 17 O -0.364 6.364 18 C 0.028 3.972 19 H 0.123 0.877 20 N -0.363 5.363 21 C 0.347 3.653 22 O -0.411 6.411 23 C -0.136 4.136 24 C -0.104 4.104 25 C -0.146 4.146 26 C -0.114 4.114 27 C -0.146 4.146 28 C -0.079 4.079 29 C -0.096 4.096 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.233 0.767 37 H 0.237 0.763 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.103 0.897 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 26.357 -14.046 0.067 29.866 hybrid contribution 0.307 1.133 -0.532 1.289 sum 26.664 -12.914 -0.465 29.630 Atomic orbital electron populations 1.69621 1.05626 1.27486 1.49423 1.25036 0.95499 0.97981 0.97662 0.86681 0.79831 0.84054 0.78896 1.19644 1.20161 1.19454 1.19412 0.79184 0.96597 1.48058 0.86280 1.42207 1.07547 1.06140 1.67205 1.19584 0.87913 0.84585 0.83994 1.90536 1.69361 1.30836 1.53502 1.22210 0.95873 0.89539 1.01975 1.63235 1.11191 1.15724 1.32081 1.23681 0.98958 0.97392 0.90403 1.23203 0.93930 0.97584 0.82699 0.90347 1.86485 1.50018 1.77282 1.22612 1.22161 0.86050 0.92527 0.96464 0.87724 1.45785 1.07919 1.14161 1.68442 1.18300 0.82348 0.87355 0.77284 1.90789 1.83033 1.17275 1.50013 1.19962 0.94477 0.94232 1.04928 1.21340 0.99560 0.92564 0.96980 1.21134 0.92909 1.00126 1.00396 1.21407 0.96947 0.95625 0.97422 1.21194 0.99467 0.93870 1.00113 1.21326 0.91141 1.00583 0.94828 1.23275 0.87509 1.00857 0.97989 0.91626 0.79705 0.88936 0.92858 0.87886 0.92488 0.76716 0.76316 0.85572 0.85287 0.85528 0.85243 0.84570 0.89682 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.52 27.74 -169.99 -4.71 14.81 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 7 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 10 C 0.45 10.26 7.58 -10.99 -0.08 10.18 16 11 O -0.56 -14.69 14.61 5.55 0.08 -14.61 16 12 C 0.04 0.61 5.06 -4.98 -0.03 0.58 16 13 N -0.50 -7.81 4.86 -232.69 -1.13 -8.94 16 14 C 0.02 0.35 5.48 -2.30 -0.01 0.34 16 15 C 0.09 0.96 4.03 -24.59 -0.10 0.86 16 16 H 0.08 0.75 8.00 -51.93 -0.42 0.33 16 17 O -0.56 -6.02 13.47 -35.23 -0.47 -6.49 16 18 C 0.13 1.60 2.97 -66.11 -0.20 1.41 16 19 H 0.10 1.48 7.69 -51.93 -0.40 1.08 16 20 N -0.71 -7.16 5.08 -52.98 -0.27 -7.43 16 21 C 0.56 6.61 7.77 -12.33 -0.10 6.51 16 22 O -0.53 -8.21 16.07 5.32 0.09 -8.12 16 23 C -0.13 -1.26 5.87 -104.96 -0.62 -1.88 16 24 C -0.09 -0.60 9.54 -39.18 -0.37 -0.98 16 25 C -0.13 -0.75 10.03 -39.64 -0.40 -1.15 16 26 C -0.10 -0.55 10.04 -39.49 -0.40 -0.95 16 27 C -0.13 -0.85 10.03 -39.64 -0.40 -1.25 16 28 C -0.06 -0.53 9.60 -39.18 -0.38 -0.91 16 29 C 0.03 0.43 6.61 -2.84 -0.02 0.41 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 32 H 0.09 1.41 8.03 -51.92 -0.42 0.99 16 33 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 34 H 0.10 1.69 7.38 -51.93 -0.38 1.31 16 35 H 0.06 0.87 7.62 -51.93 -0.40 0.48 16 36 H 0.38 2.61 9.12 45.56 0.42 3.03 16 37 H 0.40 2.94 6.55 -40.82 -0.27 2.67 16 38 H 0.13 0.61 6.41 -52.49 -0.34 0.27 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.14 1.25 7.65 -52.49 -0.40 0.84 16 43 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 44 H 0.07 0.89 7.56 -51.93 -0.39 0.50 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -36.08 369.40 -8.35 -44.43 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -4.88 Total: 14.46 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -3.34 Total: 5.49 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.68 Total: -55.54 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.31 Total: -29.22 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.08 -8.35 -44.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190676138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.641 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds