Wall clock time and date at job start Tue Mar 31 2020 17:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48501 * 109.47371 * 269.99937 * 3 2 1 5 5 H 1.48505 * 109.47147 * 30.00145 * 3 2 1 6 6 H 1.48499 * 109.47136 * 149.99706 * 3 2 1 7 7 C 1.38950 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00402 * 179.97438 * 7 2 1 10 10 C 1.34769 * 120.00233 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00245 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00197 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47320 * 180.02562 * 12 10 9 14 14 C 1.47841 * 111.00076 * 69.15730 * 13 12 10 15 15 C 1.54907 * 104.79973 * 146.36293 * 14 13 12 16 16 H 1.09006 * 110.98781 * 81.01819 * 15 14 13 17 17 O 1.42892 * 110.99377 * 204.83703 * 15 14 13 18 18 C 1.55140 * 101.65164 * 322.93164 * 15 14 13 19 19 H 1.08995 * 110.85327 * 277.19954 * 18 15 14 20 20 N 1.46498 * 110.70615 * 154.03164 * 18 15 14 21 21 C 1.34777 * 119.99828 * 159.66756 * 20 18 15 22 22 O 1.21553 * 119.99924 * 0.28083 * 21 20 18 23 23 C 1.47851 * 120.00199 * 180.27782 * 21 20 18 24 24 C 1.39578 * 120.13798 * 359.72647 * 23 21 20 25 25 C 1.37958 * 119.84785 * 179.79166 * 24 23 21 26 26 C 1.38364 * 120.14409 * 0.48599 * 25 24 23 27 27 C 1.38360 * 120.29478 * 359.74180 * 26 25 24 28 28 C 1.37959 * 120.14465 * 0.02790 * 27 26 25 29 29 C 1.47441 * 110.99953 * 189.99702 * 13 12 10 30 30 H 0.96999 * 119.99589 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99696 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.47191 * 59.99671 * 12 10 9 33 33 H 1.09005 * 109.46689 * 300.00218 * 12 10 9 34 34 H 1.09004 * 110.37555 * 265.19121 * 14 13 12 35 35 H 1.09002 * 110.37497 * 27.53333 * 14 13 12 36 36 H 0.96701 * 114.00617 * 292.26919 * 17 15 14 37 37 H 0.97001 * 120.00384 * 339.95203 * 20 18 15 38 38 H 1.07999 * 120.07726 * 359.97438 * 24 23 21 39 39 H 1.07998 * 119.92862 * 180.22691 * 25 24 23 40 40 H 1.07998 * 119.85357 * 179.72620 * 26 25 24 41 41 H 1.07994 * 119.92953 * 179.97438 * 27 26 25 42 42 H 1.07997 * 120.07790 * 179.97438 * 28 27 26 43 43 H 1.09006 * 109.88493 * 117.33930 * 29 13 12 44 44 H 1.08996 * 110.02834 * 356.22966 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 5.7640 -4.4182 -1.2908 15 6 6.9563 -5.3817 -1.5140 16 1 6.8237 -6.3044 -0.9489 17 8 7.1387 -5.6569 -2.9043 18 6 8.1398 -4.5510 -0.9519 19 1 8.5085 -3.8470 -1.6978 20 7 9.2186 -5.4303 -0.4944 21 6 10.4696 -4.9476 -0.3587 22 8 10.7018 -3.7815 -0.6110 23 6 11.5596 -5.8365 0.0972 24 6 11.2951 -7.1746 0.3933 25 6 12.3175 -7.9998 0.8141 26 6 13.6007 -7.5010 0.9525 27 6 13.8686 -6.1744 0.6651 28 6 12.8562 -5.3397 0.2389 29 6 7.5046 -3.8019 0.2383 30 1 -0.4849 0.8401 -0.0004 31 1 3.8649 -0.3633 -0.0004 32 1 5.9241 -1.8567 0.8900 33 1 5.9240 -1.8567 -0.8900 34 1 4.8302 -4.9774 -1.2312 35 1 5.7158 -3.6819 -2.0931 36 1 6.4238 -6.1740 -3.3000 37 1 9.0334 -6.3609 -0.2930 38 1 10.2930 -7.5639 0.2905 39 1 12.1151 -9.0363 1.0401 40 1 14.3967 -8.1501 1.2864 41 1 14.8722 -5.7912 0.7755 42 1 13.0665 -4.3042 0.0153 43 1 7.7111 -4.3364 1.1656 44 1 7.9058 -2.7902 0.2965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190676138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:10 Heat of formation + Delta-G solvation = -100.474456 kcal Electronic energy + Delta-G solvation = -27721.394197 eV Core-core repulsion = 23637.895042 eV Total energy + Delta-G solvation = -4083.499155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60222 -40.70308 -39.74360 -38.95302 -36.98655 -36.01988 -35.55990 -33.76204 -32.58257 -31.87118 -31.14501 -29.26487 -28.16554 -25.97276 -24.76260 -23.44926 -22.71431 -22.10457 -21.49287 -21.24142 -20.26222 -19.18394 -18.61783 -17.89499 -17.44067 -17.11782 -16.89928 -16.42206 -16.31058 -16.11735 -15.90600 -15.54305 -15.33581 -15.08000 -14.80080 -14.61603 -14.50321 -14.32152 -14.26066 -14.11420 -13.71955 -13.51546 -13.30891 -13.19089 -13.03895 -12.62459 -12.60256 -12.42384 -12.02951 -11.99360 -11.79762 -11.50520 -11.29561 -11.02077 -10.46938 -10.39435 -10.24972 -9.94323 -9.91560 -9.33018 -8.41977 -6.02254 -0.14617 0.42675 1.29650 1.33796 1.42693 1.80124 1.91063 1.93868 2.21557 2.47417 2.89550 2.95152 3.13375 3.21609 3.45827 3.58007 3.76594 3.89910 3.92000 4.03284 4.10540 4.16426 4.24519 4.25660 4.30394 4.39533 4.47797 4.53385 4.58226 4.75511 4.80893 4.86863 4.94730 5.06900 5.27934 5.36382 5.46106 5.50666 5.52397 5.75164 5.84868 5.95758 5.96216 6.40013 6.58480 6.73074 6.87270 7.07775 7.38591 7.94525 8.75367 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023808 B = 0.002146 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.799306 B =13046.434741 C =13616.442226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.961 3.039 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.234 1.234 7 C -0.325 4.325 8 H 0.059 0.941 9 N -0.593 5.593 10 C 0.454 3.546 11 O -0.602 6.602 12 C 0.045 3.955 13 N -0.514 5.514 14 C 0.023 3.977 15 C 0.105 3.895 16 H 0.103 0.897 17 O -0.568 6.568 18 C 0.139 3.861 19 H 0.083 0.917 20 N -0.698 5.698 21 C 0.557 3.443 22 O -0.579 6.579 23 C -0.157 4.157 24 C -0.086 4.086 25 C -0.129 4.129 26 C -0.091 4.091 27 C -0.132 4.132 28 C -0.080 4.080 29 C 0.039 3.961 30 H 0.279 0.721 31 H 0.388 0.612 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.402 0.598 37 H 0.416 0.584 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.948 -14.967 0.376 33.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.213 4.213 3 Si 0.781 3.219 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.157 1.157 7 C -0.454 4.454 8 H 0.077 0.923 9 N -0.235 5.235 10 C 0.242 3.758 11 O -0.486 6.486 12 C -0.086 4.086 13 N -0.239 5.239 14 C -0.105 4.105 15 C 0.044 3.956 16 H 0.121 0.879 17 O -0.376 6.376 18 C 0.033 3.967 19 H 0.101 0.899 20 N -0.350 5.350 21 C 0.347 3.653 22 O -0.460 6.460 23 C -0.160 4.160 24 C -0.104 4.104 25 C -0.146 4.146 26 C -0.109 4.109 27 C -0.150 4.150 28 C -0.100 4.100 29 C -0.089 4.089 30 H 0.088 0.912 31 H 0.223 0.777 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.253 0.747 37 H 0.255 0.745 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.173 0.827 41 H 0.166 0.834 42 H 0.139 0.861 43 H 0.113 0.887 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 29.766 -14.683 0.681 33.197 hybrid contribution -0.761 1.114 -0.728 1.533 sum 29.005 -13.569 -0.047 32.022 Atomic orbital electron populations 1.69795 1.07991 1.29173 1.50383 1.26062 0.96457 1.02545 0.96223 0.85415 0.79495 0.77096 0.79864 1.18296 1.19923 1.15729 1.18993 0.81296 0.94969 1.50147 0.92327 1.42046 1.05930 1.07518 1.68010 1.20697 0.90377 0.83459 0.81282 1.90519 1.71096 1.32405 1.54543 1.22136 0.91042 0.91115 1.04308 1.63160 1.13050 1.14970 1.32735 1.23608 0.99514 0.97682 0.89736 1.23021 0.91669 0.97505 0.83382 0.87948 1.86456 1.51028 1.77737 1.22360 1.21921 0.86557 0.92608 0.95641 0.89877 1.45621 1.07042 1.14640 1.67726 1.18742 0.83063 0.87107 0.76419 1.90756 1.83741 1.19270 1.52194 1.19895 0.93839 0.95121 1.07106 1.21595 1.01086 0.91492 0.96253 1.21529 0.92564 1.01282 0.99257 1.21821 0.97854 0.95394 0.95841 1.21447 0.99761 0.94263 0.99546 1.21384 0.91912 1.00500 0.96159 1.23251 0.85629 1.01346 0.98706 0.91163 0.77665 0.86290 0.90547 0.90337 0.93626 0.74685 0.74523 0.83547 0.82499 0.82671 0.83381 0.86113 0.88705 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.96 21.66 0.30 -56.08 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.96 39.48 27.74 68.60 1.90 41.38 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.23 -8.21 6.52 99.48 0.65 -7.56 16 7 C -0.32 -19.08 10.16 84.04 0.85 -18.22 16 8 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 9 N -0.59 -28.35 5.09 -306.99 -1.56 -29.91 16 10 C 0.45 20.70 7.58 87.66 0.66 21.36 16 11 O -0.60 -32.76 14.61 -3.07 -0.04 -32.81 16 12 C 0.05 1.47 5.06 85.56 0.43 1.91 16 13 N -0.51 -15.62 4.86 -890.09 -4.33 -19.95 16 14 C 0.02 0.67 5.48 86.77 0.48 1.15 16 15 C 0.10 2.19 4.03 31.98 0.13 2.32 16 16 H 0.10 1.69 8.00 -2.38 -0.02 1.67 16 17 O -0.57 -11.37 13.47 -148.98 -2.01 -13.38 16 18 C 0.14 3.17 2.97 46.17 0.14 3.31 16 19 H 0.08 2.31 7.69 -2.39 -0.02 2.30 16 20 N -0.70 -13.02 5.08 -439.82 -2.23 -15.25 16 21 C 0.56 12.92 7.77 86.79 0.67 13.60 16 22 O -0.58 -18.16 16.07 -3.88 -0.06 -18.23 16 23 C -0.16 -2.82 5.87 -20.09 -0.12 -2.94 16 24 C -0.09 -0.99 9.54 22.53 0.21 -0.77 16 25 C -0.13 -1.06 10.03 22.23 0.22 -0.84 16 26 C -0.09 -0.74 10.04 22.33 0.22 -0.52 16 27 C -0.13 -1.52 10.03 22.23 0.22 -1.29 16 28 C -0.08 -1.41 9.60 22.53 0.22 -1.19 16 29 C 0.04 0.96 6.61 86.65 0.57 1.53 16 30 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.39 15.59 5.76 -92.70 -0.53 15.06 16 32 H 0.12 3.28 8.03 -2.38 -0.02 3.26 16 33 H 0.08 2.18 7.85 -2.38 -0.02 2.16 16 34 H 0.08 2.66 7.38 -2.38 -0.02 2.64 16 35 H 0.05 1.40 7.62 -2.39 -0.02 1.39 16 36 H 0.40 4.84 9.12 -74.06 -0.68 4.17 16 37 H 0.42 5.07 6.55 -92.71 -0.61 4.46 16 38 H 0.15 0.94 6.41 -2.91 -0.02 0.93 16 39 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16 41 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.12 2.36 7.65 -2.91 -0.02 2.34 16 43 H 0.09 2.15 8.03 -2.38 -0.02 2.13 16 44 H 0.07 1.69 7.56 -2.39 -0.02 1.67 16 Total: -1.00 -84.53 369.40 -3.45 -87.98 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -0.81 Total: 37.17 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 5.39 Total: 19.07 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -7.82 Total: -121.20 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -2.11 Total: -64.41 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Total: -84.53 -3.45 -87.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190676138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.490 kcal (2) G-P(sol) polarization free energy of solvation -84.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds