Wall clock time and date at job start Tue Mar 31 2020 18:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99600 * 2 1 4 4 H 1.48494 * 109.47215 * 269.99975 * 3 2 1 5 5 H 1.48503 * 109.47253 * 29.99942 * 3 2 1 6 6 H 1.48501 * 109.47165 * 149.99812 * 3 2 1 7 7 C 1.37870 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99927 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00008 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.40396 * 66.45921 * 9 7 2 11 11 O 1.42102 * 106.40222 * 293.54008 * 9 7 2 12 12 N 1.65603 * 107.21890 * 179.97438 * 9 7 2 13 13 C 1.46506 * 119.99716 * 65.00375 * 12 9 7 14 14 H 1.08999 * 109.47199 * 24.99594 * 13 12 9 15 15 C 1.52996 * 109.47224 * 145.00149 * 13 12 9 16 16 C 1.53002 * 109.46942 * 295.47246 * 15 13 12 17 17 C 1.52996 * 109.47273 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47574 * 180.02562 * 17 16 15 19 19 N 1.46892 * 109.47276 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.46632 * 265.00108 * 13 12 9 21 21 O 1.21279 * 119.99805 * 332.96375 * 20 13 12 22 22 N 1.34780 * 119.99734 * 152.69965 * 20 13 12 23 23 C 1.47021 * 125.64886 * 354.90752 * 22 20 13 24 24 C 1.54309 * 107.27490 * 180.97089 * 23 22 20 25 25 C 1.55161 * 102.86575 * 22.52796 * 24 23 22 26 26 C 1.47418 * 125.64629 * 175.21994 * 22 20 13 27 27 H 0.96993 * 120.00345 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00415 * 245.00195 * 12 9 7 29 29 H 1.08999 * 109.46942 * 55.47489 * 15 13 12 30 30 H 1.09000 * 109.47094 * 175.47540 * 15 13 12 31 31 H 1.08994 * 109.47271 * 300.00317 * 16 15 13 32 32 H 1.09005 * 109.46556 * 60.00179 * 16 15 13 33 33 H 1.09008 * 109.47192 * 300.00400 * 17 16 15 34 34 H 1.08998 * 109.47222 * 59.99993 * 17 16 15 35 35 H 1.09003 * 109.46765 * 300.00700 * 18 17 16 36 36 H 1.09004 * 109.46614 * 59.99600 * 18 17 16 37 37 H 1.00899 * 111.00415 * 56.04620 * 19 18 17 38 38 H 1.00903 * 110.99728 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.88078 * 300.51779 * 23 22 20 40 40 H 1.09004 * 109.87995 * 61.68279 * 23 22 20 41 41 H 1.08999 * 110.92590 * 264.10976 * 24 23 22 42 42 H 1.09000 * 110.59043 * 140.78822 * 24 23 22 43 43 H 1.09000 * 111.00581 * 206.22929 * 25 24 23 44 44 H 1.08996 * 111.00313 * 82.37383 * 25 24 23 45 45 H 1.09002 * 110.37084 * 274.67337 * 26 22 20 46 46 H 1.09007 * 110.36869 * 36.88047 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 16 3.7666 -1.1938 0.0001 10 8 4.1674 -0.6502 1.2504 11 8 4.1683 -0.6485 -1.2491 12 7 4.2569 -2.7756 0.0000 13 6 3.9621 -3.6337 -1.1503 14 1 3.8384 -3.0177 -2.0409 15 6 5.1171 -4.6140 -1.3646 16 6 6.3816 -3.8382 -1.7389 17 6 7.5368 -4.8184 -1.9526 18 6 8.8015 -4.0427 -2.3263 19 7 9.9104 -4.9839 -2.5320 20 6 2.6921 -4.4026 -0.8909 21 8 2.3560 -4.6520 0.2473 22 7 1.9272 -4.8083 -1.9238 23 6 2.1547 -4.4811 -3.3390 24 6 1.0190 -5.1396 -4.1499 25 6 -0.1018 -5.3189 -3.0920 26 6 0.7202 -5.6484 -1.8210 27 1 -0.4850 0.8400 -0.0004 28 1 4.7393 -3.1340 0.7614 29 1 5.2930 -5.1744 -0.4464 30 1 4.8631 -5.3045 -2.1688 31 1 6.2056 -3.2778 -2.6570 32 1 6.6356 -3.1477 -0.9346 33 1 7.7126 -5.3786 -1.0341 34 1 7.2831 -5.5093 -2.7565 35 1 8.6259 -3.4822 -3.2445 36 1 9.0550 -3.3520 -1.5219 37 1 9.6740 -5.6745 -3.2285 38 1 10.7579 -4.4955 -2.7796 39 1 2.1331 -3.4001 -3.4776 40 1 3.1168 -4.8791 -3.6614 41 1 1.3331 -6.1051 -4.5464 42 1 0.6894 -4.4805 -4.9530 43 1 -0.7603 -6.1462 -3.3568 44 1 -0.6682 -4.3967 -2.9628 45 1 0.9924 -6.7038 -1.8082 46 1 0.1550 -5.3924 -0.9247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238917302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:27 Heat of formation + Delta-G solvation = -128.658818 kcal Electronic energy + Delta-G solvation = -28461.375857 eV Core-core repulsion = 24512.098488 eV Total energy + Delta-G solvation = -3949.277369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.91970 -37.50478 -36.59845 -35.65576 -34.98352 -34.44826 -32.99395 -32.24707 -31.53178 -29.18491 -28.48368 -26.39729 -25.52350 -23.26108 -21.82073 -21.15500 -20.95982 -19.28013 -18.98024 -17.71308 -17.00335 -16.57098 -16.46276 -16.15708 -15.59020 -15.48338 -15.04501 -14.77257 -14.59587 -13.99104 -13.88369 -13.54234 -13.38423 -13.28006 -13.06552 -12.88142 -12.84960 -12.53662 -12.11803 -11.97125 -11.62970 -11.42781 -11.35918 -11.32312 -11.17688 -11.05905 -10.90926 -10.75140 -10.71037 -10.63520 -10.54931 -10.50864 -10.06412 -9.82080 -9.18451 -9.06979 -8.93605 -8.54963 -8.37596 -6.75989 -5.29134 2.03754 2.96454 3.07750 3.17303 3.21406 3.27520 3.96614 4.24982 4.30235 4.51058 4.60039 4.62940 4.78869 4.88532 4.91215 4.98304 5.06977 5.15518 5.30769 5.33481 5.38645 5.42132 5.43708 5.61395 5.65515 5.70817 5.72411 5.79134 5.83939 5.87325 5.92709 6.00740 6.05160 6.07964 6.20974 6.27073 6.38430 6.43693 6.58508 6.87841 7.17285 7.51363 7.66364 7.79071 8.31238 8.53857 8.75347 10.36524 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.005707 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.248661 B = 4904.793658 C = 7353.903902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.155 3.845 3 Si 0.799 3.201 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.221 1.221 7 C -1.012 5.012 8 H 0.124 0.876 9 S 2.671 3.329 10 O -1.005 7.005 11 O -1.010 7.010 12 N -1.099 6.099 13 C 0.149 3.851 14 H 0.111 0.889 15 C -0.112 4.112 16 C -0.120 4.120 17 C -0.116 4.116 18 C 0.057 3.943 19 N -0.854 5.854 20 C 0.518 3.482 21 O -0.520 6.520 22 N -0.619 5.619 23 C 0.093 3.907 24 C -0.130 4.130 25 C -0.135 4.135 26 C 0.105 3.895 27 H 0.279 0.721 28 H 0.412 0.588 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.338 0.662 38 H 0.340 0.660 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.991 -12.314 -11.388 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.064 4.064 3 Si 0.619 3.381 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.147 5.147 8 H 0.142 0.858 9 S 2.772 3.228 10 O -0.995 6.995 11 O -1.000 7.000 12 N -0.853 5.853 13 C 0.036 3.964 14 H 0.129 0.871 15 C -0.151 4.151 16 C -0.159 4.159 17 C -0.154 4.154 18 C -0.074 4.074 19 N -0.383 5.383 20 C 0.305 3.695 21 O -0.394 6.394 22 N -0.356 5.356 23 C -0.031 4.031 24 C -0.167 4.167 25 C -0.173 4.173 26 C -0.017 4.017 27 H 0.090 0.910 28 H 0.244 0.756 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.100 -11.699 -10.061 17.427 hybrid contribution -0.467 0.711 -0.682 1.090 sum 7.633 -10.988 -10.743 17.159 Atomic orbital electron populations 1.70000 1.06539 1.28818 1.39689 1.24406 0.94747 0.98575 0.88696 0.87906 0.83656 0.84782 0.81722 1.17023 1.17869 1.14334 1.30463 1.15399 1.02396 1.66466 0.85773 1.01508 0.77525 0.70316 0.73419 1.93481 1.85570 1.75668 1.44780 1.93403 1.85155 1.75866 1.45603 1.55384 1.73266 1.30336 1.26345 1.20548 0.91814 0.93239 0.90791 0.87100 1.21715 0.93446 0.97186 1.02761 1.21568 0.93329 0.98115 1.02848 1.21571 0.93547 0.98148 1.02150 1.21857 0.91013 0.94434 1.00067 1.58726 1.06237 1.18979 1.54380 1.21053 0.85320 0.79122 0.84048 1.90688 1.72168 1.55456 1.21105 1.48473 1.27966 1.52402 1.06761 1.22138 0.98869 1.01156 0.80889 1.22608 0.95144 1.01138 0.97857 1.22799 0.97302 1.02885 0.94321 1.22171 0.86130 0.94121 0.99320 0.91038 0.75581 0.90534 0.90628 0.91172 0.90909 0.91106 0.92262 0.95379 0.90808 0.84991 0.84804 0.90480 0.91366 0.90745 0.89973 0.90114 0.90097 0.91910 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.12 13.96 55.43 0.77 -23.35 16 2 C 0.16 4.54 5.47 -17.82 -0.10 4.45 16 3 Si 0.80 20.84 26.54 -169.99 -4.51 16.33 16 4 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.22 -5.91 5.61 56.52 0.32 -5.59 16 7 C -1.01 -29.25 10.26 30.60 0.31 -28.94 16 8 H 0.12 3.77 7.21 -52.49 -0.38 3.39 16 9 S 2.67 68.18 4.22 -107.50 -0.45 67.73 16 10 O -1.00 -27.93 16.02 -57.17 -0.92 -28.84 16 11 O -1.01 -26.22 16.17 -57.17 -0.92 -27.15 16 12 N -1.10 -22.04 4.54 -5.88 -0.03 -22.06 16 13 C 0.15 2.55 2.29 -69.08 -0.16 2.40 16 14 H 0.11 1.89 6.53 -51.93 -0.34 1.56 16 15 C -0.11 -1.41 4.80 -26.73 -0.13 -1.54 16 16 C -0.12 -1.42 5.10 -26.73 -0.14 -1.56 16 17 C -0.12 -1.14 5.47 -26.73 -0.15 -1.28 16 18 C 0.06 0.54 6.79 -3.83 -0.03 0.52 16 19 N -0.85 -7.19 9.62 -10.37 -0.10 -7.29 16 20 C 0.52 9.81 6.32 -10.98 -0.07 9.74 16 21 O -0.52 -11.78 16.77 5.56 0.09 -11.69 16 22 N -0.62 -9.74 3.33 -170.53 -0.57 -10.31 16 23 C 0.09 1.12 6.10 -3.07 -0.02 1.10 16 24 C -0.13 -1.22 6.95 -24.90 -0.17 -1.39 16 25 C -0.13 -1.47 7.08 -24.58 -0.17 -1.64 16 26 C 0.11 1.45 6.93 -2.53 -0.02 1.43 16 27 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.41 7.35 8.84 -34.48 -0.30 7.05 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.79 7.90 -51.93 -0.41 0.37 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.95 7.74 -51.93 -0.40 0.55 16 33 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.34 2.35 8.99 -39.29 -0.35 2.00 16 38 H 0.34 2.34 9.08 -39.29 -0.36 1.98 16 39 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 40 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -36.50 382.52 -9.35 -45.85 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.65 Total: 11.72 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -0.83 Total: -16.71 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: 0.08 Total: -63.01 kcal Atomic # 8 Polarization: -65.93 SS G_CDS: -1.75 Total: -67.68 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.51 Total: 16.33 kcal Atomic # 16 Polarization: 68.18 SS G_CDS: -0.45 Total: 67.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.50 -9.35 -45.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238917302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.807 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds