Wall clock time and date at job start Tue Mar 31 2020 18:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99600 * 2 1 4 4 H 1.48494 * 109.47215 * 269.99975 * 3 2 1 5 5 H 1.48503 * 109.47253 * 29.99942 * 3 2 1 6 6 H 1.48501 * 109.47165 * 149.99812 * 3 2 1 7 7 C 1.37870 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99927 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00008 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.40396 * 66.45921 * 9 7 2 11 11 O 1.42102 * 106.40222 * 293.54008 * 9 7 2 12 12 N 1.65603 * 107.21890 * 179.97438 * 9 7 2 13 13 C 1.46506 * 119.99716 * 65.00375 * 12 9 7 14 14 H 1.08999 * 109.47199 * 24.99594 * 13 12 9 15 15 C 1.52996 * 109.47224 * 145.00149 * 13 12 9 16 16 C 1.53002 * 109.46942 * 295.47246 * 15 13 12 17 17 C 1.52996 * 109.47273 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47574 * 180.02562 * 17 16 15 19 19 N 1.46892 * 109.47276 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.46632 * 265.00108 * 13 12 9 21 21 O 1.21279 * 119.99805 * 332.96375 * 20 13 12 22 22 N 1.34780 * 119.99734 * 152.69965 * 20 13 12 23 23 C 1.47021 * 125.64886 * 354.90752 * 22 20 13 24 24 C 1.54309 * 107.27490 * 180.97089 * 23 22 20 25 25 C 1.55161 * 102.86575 * 22.52796 * 24 23 22 26 26 C 1.47418 * 125.64629 * 175.21994 * 22 20 13 27 27 H 0.96993 * 120.00345 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00415 * 245.00195 * 12 9 7 29 29 H 1.08999 * 109.46942 * 55.47489 * 15 13 12 30 30 H 1.09000 * 109.47094 * 175.47540 * 15 13 12 31 31 H 1.08994 * 109.47271 * 300.00317 * 16 15 13 32 32 H 1.09005 * 109.46556 * 60.00179 * 16 15 13 33 33 H 1.09008 * 109.47192 * 300.00400 * 17 16 15 34 34 H 1.08998 * 109.47222 * 59.99993 * 17 16 15 35 35 H 1.09003 * 109.46765 * 300.00700 * 18 17 16 36 36 H 1.09004 * 109.46614 * 59.99600 * 18 17 16 37 37 H 1.00899 * 111.00415 * 56.04620 * 19 18 17 38 38 H 1.00903 * 110.99728 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.88078 * 300.51779 * 23 22 20 40 40 H 1.09004 * 109.87995 * 61.68279 * 23 22 20 41 41 H 1.08999 * 110.92590 * 264.10976 * 24 23 22 42 42 H 1.09000 * 110.59043 * 140.78822 * 24 23 22 43 43 H 1.09000 * 111.00581 * 206.22929 * 25 24 23 44 44 H 1.08996 * 111.00313 * 82.37383 * 25 24 23 45 45 H 1.09002 * 110.37084 * 274.67337 * 26 22 20 46 46 H 1.09007 * 110.36869 * 36.88047 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 16 3.7666 -1.1938 0.0001 10 8 4.1674 -0.6502 1.2504 11 8 4.1683 -0.6485 -1.2491 12 7 4.2569 -2.7756 0.0000 13 6 3.9621 -3.6337 -1.1503 14 1 3.8384 -3.0177 -2.0409 15 6 5.1171 -4.6140 -1.3646 16 6 6.3816 -3.8382 -1.7389 17 6 7.5368 -4.8184 -1.9526 18 6 8.8015 -4.0427 -2.3263 19 7 9.9104 -4.9839 -2.5320 20 6 2.6921 -4.4026 -0.8909 21 8 2.3560 -4.6520 0.2473 22 7 1.9272 -4.8083 -1.9238 23 6 2.1547 -4.4811 -3.3390 24 6 1.0190 -5.1396 -4.1499 25 6 -0.1018 -5.3189 -3.0920 26 6 0.7202 -5.6484 -1.8210 27 1 -0.4850 0.8400 -0.0004 28 1 4.7393 -3.1340 0.7614 29 1 5.2930 -5.1744 -0.4464 30 1 4.8631 -5.3045 -2.1688 31 1 6.2056 -3.2778 -2.6570 32 1 6.6356 -3.1477 -0.9346 33 1 7.7126 -5.3786 -1.0341 34 1 7.2831 -5.5093 -2.7565 35 1 8.6259 -3.4822 -3.2445 36 1 9.0550 -3.3520 -1.5219 37 1 9.6740 -5.6745 -3.2285 38 1 10.7579 -4.4955 -2.7796 39 1 2.1331 -3.4001 -3.4776 40 1 3.1168 -4.8791 -3.6614 41 1 1.3331 -6.1051 -4.5464 42 1 0.6894 -4.4805 -4.9530 43 1 -0.7603 -6.1462 -3.3568 44 1 -0.6682 -4.3967 -2.9628 45 1 0.9924 -6.7038 -1.8082 46 1 0.1550 -5.3924 -0.9247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238917302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:24 Heat of formation + Delta-G solvation = -160.125601 kcal Electronic energy + Delta-G solvation = -28462.740359 eV Core-core repulsion = 24512.098488 eV Total energy + Delta-G solvation = -3950.641871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.23937 -38.65347 -37.82242 -37.59965 -36.57964 -36.15316 -35.21499 -33.35231 -32.68093 -30.25808 -29.52619 -28.61095 -26.64595 -24.31648 -22.78841 -22.03715 -21.92844 -21.20808 -20.35345 -19.66920 -18.83478 -18.17696 -17.72637 -17.28003 -17.00569 -16.80947 -16.20883 -16.03950 -15.84788 -15.67020 -15.42276 -15.00463 -14.97892 -14.50447 -14.36051 -14.19455 -13.94799 -13.78973 -13.50171 -13.35492 -13.18065 -12.98342 -12.84413 -12.76386 -12.63068 -12.33206 -12.19240 -12.15559 -12.02000 -11.93240 -11.80967 -11.70890 -11.56902 -11.42657 -11.35950 -11.09616 -10.20005 -9.63176 -9.57682 -8.98205 -7.55638 0.04391 1.01282 1.10748 1.17802 1.52097 1.85717 1.97213 2.38686 2.48076 3.20242 3.34993 3.58447 3.70378 3.82091 3.87698 3.89306 4.05027 4.09916 4.10528 4.22755 4.33746 4.38220 4.51976 4.57484 4.66244 4.69458 4.70192 4.84651 4.88839 4.91070 4.95950 4.99883 5.07638 5.14887 5.16713 5.31235 5.35308 5.41011 5.45981 5.49960 5.99401 6.11551 6.26582 6.48469 6.50434 6.64494 7.12841 8.20226 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.005707 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.248661 B = 4904.793658 C = 7353.903902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.110 3.890 3 Si 0.826 3.174 4 H -0.229 1.229 5 H -0.220 1.220 6 H -0.232 1.232 7 C -1.038 5.038 8 H 0.094 0.906 9 S 2.696 3.304 10 O -1.029 7.029 11 O -1.014 7.014 12 N -1.090 6.090 13 C 0.142 3.858 14 H 0.112 0.888 15 C -0.101 4.101 16 C -0.120 4.120 17 C -0.107 4.107 18 C 0.056 3.944 19 N -0.860 5.860 20 C 0.507 3.493 21 O -0.573 6.573 22 N -0.621 5.621 23 C 0.078 3.922 24 C -0.117 4.117 25 C -0.130 4.130 26 C 0.095 3.905 27 H 0.291 0.709 28 H 0.422 0.578 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.348 0.652 38 H 0.348 0.652 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.330 -13.365 -13.895 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.107 4.107 3 Si 0.643 3.357 4 H -0.151 1.151 5 H -0.142 1.142 6 H -0.155 1.155 7 C -1.170 5.170 8 H 0.113 0.887 9 S 2.795 3.205 10 O -1.019 7.019 11 O -1.003 7.003 12 N -0.848 5.848 13 C 0.031 3.969 14 H 0.130 0.870 15 C -0.140 4.140 16 C -0.159 4.159 17 C -0.145 4.145 18 C -0.075 4.075 19 N -0.391 5.391 20 C 0.294 3.706 21 O -0.452 6.452 22 N -0.355 5.355 23 C -0.044 4.044 24 C -0.154 4.154 25 C -0.168 4.168 26 C -0.027 4.027 27 H 0.101 0.899 28 H 0.257 0.743 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.132 0.868 44 H 0.072 0.928 45 H 0.108 0.892 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.398 -12.749 -12.621 20.252 hybrid contribution -0.928 0.923 0.065 1.310 sum 8.470 -11.826 -12.556 19.216 Atomic orbital electron populations 1.70034 1.07591 1.30406 1.40270 1.25199 0.95642 1.01411 0.88456 0.87477 0.82670 0.82498 0.83078 1.15149 1.14179 1.15496 1.30954 1.18053 1.01429 1.66578 0.88730 1.00615 0.75666 0.71511 0.72688 1.93439 1.85276 1.77359 1.45863 1.93384 1.84532 1.76935 1.45493 1.54955 1.72632 1.29273 1.27945 1.20915 0.93112 0.93654 0.89259 0.87014 1.21733 0.91767 0.96428 1.04094 1.21567 0.93653 0.98319 1.02326 1.21471 0.92711 0.97730 1.02593 1.21801 0.91313 0.94515 0.99857 1.58688 1.06279 1.19106 1.55052 1.21386 0.86101 0.79100 0.84019 1.90652 1.73541 1.57836 1.23172 1.48645 1.27601 1.51466 1.07815 1.22514 1.02075 1.00665 0.79146 1.22652 0.92930 1.02844 0.97003 1.22794 0.97757 1.02859 0.93386 1.22398 0.85741 0.95232 0.99345 0.89873 0.74331 0.90331 0.87432 0.90845 0.92670 0.91662 0.90334 0.94910 0.92097 0.83918 0.83876 0.92460 0.87900 0.87424 0.88591 0.86818 0.92753 0.89242 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.19 13.96 21.44 0.30 -50.89 16 2 C 0.11 6.53 5.47 84.65 0.46 6.99 16 3 Si 0.83 41.95 26.54 68.60 1.82 43.77 16 4 H -0.23 -10.89 7.11 99.48 0.71 -10.19 16 5 H -0.22 -9.86 7.11 99.48 0.71 -9.16 16 6 H -0.23 -12.21 5.61 99.48 0.56 -11.65 16 7 C -1.04 -62.02 10.26 67.73 0.69 -61.33 16 8 H 0.09 6.09 7.21 -2.91 -0.02 6.07 16 9 S 2.70 139.42 4.22 -56.49 -0.24 139.18 16 10 O -1.03 -57.84 16.02 -128.00 -2.05 -59.89 16 11 O -1.01 -52.35 16.17 -128.00 -2.07 -54.42 16 12 N -1.09 -44.32 4.54 -172.51 -0.78 -45.10 16 13 C 0.14 4.85 2.29 44.24 0.10 4.95 16 14 H 0.11 3.77 6.53 -2.39 -0.02 3.76 16 15 C -0.10 -2.35 4.80 30.59 0.15 -2.21 16 16 C -0.12 -2.62 5.10 30.59 0.16 -2.46 16 17 C -0.11 -1.83 5.47 30.59 0.17 -1.66 16 18 C 0.06 0.96 6.79 86.31 0.59 1.55 16 19 N -0.86 -12.62 9.62 -186.72 -1.80 -14.42 16 20 C 0.51 19.58 6.32 87.66 0.55 20.14 16 21 O -0.57 -27.26 16.77 -3.03 -0.05 -27.31 16 22 N -0.62 -19.43 3.33 -811.81 -2.70 -22.13 16 23 C 0.08 1.74 6.10 86.72 0.53 2.27 16 24 C -0.12 -1.81 6.95 31.78 0.22 -1.59 16 25 C -0.13 -2.64 7.08 31.99 0.23 -2.41 16 26 C 0.10 2.62 6.93 86.86 0.60 3.22 16 27 H 0.29 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.42 15.33 8.84 -96.74 -0.85 14.47 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.11 1.85 7.90 -2.39 -0.02 1.83 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.39 7.74 -2.38 -0.02 1.37 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.35 3.93 8.99 -89.69 -0.81 3.12 16 38 H 0.35 4.13 9.08 -89.69 -0.81 3.31 16 39 H 0.06 1.51 7.91 -2.39 -0.02 1.49 16 40 H 0.10 1.59 7.90 -2.38 -0.02 1.57 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.04 1.44 7.99 -2.38 -0.02 1.42 16 Total: -1.00 -82.31 382.52 -4.74 -87.05 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -1.62 Total: 36.70 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.45 Total: -32.55 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -4.98 Total: -132.53 kcal Atomic # 8 Polarization: -137.45 SS G_CDS: -4.17 Total: -141.62 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.82 Total: 43.77 kcal Atomic # 16 Polarization: 139.42 SS G_CDS: -0.24 Total: 139.18 kcal Total: -82.31 -4.74 -87.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238917302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.073 kcal (2) G-P(sol) polarization free energy of solvation -82.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds