Wall clock time and date at job start Tue Mar 31 2020 17:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99737 * 2 1 4 4 H 1.48505 * 109.47426 * 270.00007 * 3 2 1 5 5 H 1.48508 * 109.47221 * 29.99965 * 3 2 1 6 6 H 1.48500 * 109.47305 * 149.99667 * 3 2 1 7 7 C 1.38946 * 120.00538 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00528 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99819 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00523 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99905 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46862 * 180.02562 * 12 10 9 14 14 C 1.47486 * 110.99695 * 170.00231 * 13 12 10 15 15 C 1.53506 * 87.93221 * 138.70374 * 14 13 12 16 16 O 1.42905 * 114.16914 * 87.62400 * 15 14 13 17 17 C 1.52998 * 114.17302 * 220.32775 * 15 14 13 18 18 N 1.46496 * 109.47319 * 179.97438 * 17 15 14 19 19 C 1.34777 * 120.00109 * 180.02562 * 18 17 15 20 20 O 1.21551 * 120.00213 * 0.02562 * 19 18 17 21 21 C 1.47854 * 120.00135 * 180.02562 * 19 18 17 22 22 C 1.39581 * 120.14139 * 359.72386 * 21 19 18 23 23 C 1.37953 * 119.84517 * 179.79080 * 22 21 19 24 24 C 1.38353 * 120.15111 * 0.48832 * 23 22 21 25 25 C 1.38359 * 120.29002 * 359.73846 * 24 23 22 26 26 C 1.37956 * 120.14873 * 0.02709 * 25 24 23 27 27 C 1.47474 * 111.00271 * 265.97166 * 13 12 10 28 28 H 0.96996 * 120.00401 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99704 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.46486 * 60.00793 * 12 10 9 31 31 H 1.08997 * 109.47378 * 300.00892 * 12 10 9 32 32 H 1.09000 * 113.47378 * 253.47583 * 14 13 12 33 33 H 1.08999 * 113.47621 * 23.93774 * 14 13 12 34 34 H 0.96706 * 113.99595 * 180.02562 * 16 15 14 35 35 H 1.08994 * 109.47218 * 300.00624 * 17 15 14 36 36 H 1.09007 * 109.46827 * 60.00100 * 17 15 14 37 37 H 0.97002 * 120.00244 * 0.02562 * 18 17 15 38 38 H 1.07993 * 120.07081 * 0.02562 * 22 21 19 39 39 H 1.08005 * 119.92267 * 180.22858 * 23 22 21 40 40 H 1.08003 * 119.85611 * 179.72351 * 24 23 22 41 41 H 1.08004 * 119.92763 * 180.02562 * 25 24 23 42 42 H 1.07992 * 120.08021 * 179.97438 * 26 25 24 43 43 H 1.09008 * 113.47654 * 336.07031 * 27 13 12 44 44 H 1.09003 * 113.47610 * 106.47225 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5577 -0.0016 11 8 3.2104 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.5116 -7.2625 0.2358 15 6 2.4122 -7.8815 -0.8422 16 8 3.6609 -8.3724 -0.3502 17 6 1.6951 -8.8660 -1.7681 18 7 2.6449 -9.3913 -2.7520 19 6 2.2338 -10.2812 -3.6770 20 8 1.0750 -10.6476 -3.6952 21 6 3.1925 -10.8119 -4.6697 22 6 4.5226 -10.3890 -4.6552 23 6 5.4129 -10.8914 -5.5815 24 6 4.9878 -11.8047 -6.5297 25 6 3.6696 -12.2245 -6.5525 26 6 2.7700 -11.7336 -5.6289 27 6 2.4687 -6.4434 -1.3762 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6171 -4.9201 -0.8920 31 1 0.6176 -4.9213 0.8879 32 1 1.6846 -7.6690 1.2323 33 1 0.4562 -7.2470 -0.0365 34 1 4.2264 -8.7615 -1.0314 35 1 1.2889 -9.6884 -1.1795 36 1 0.8835 -8.3535 -2.2848 37 1 3.5696 -9.0988 -2.7378 38 1 4.8548 -9.6730 -3.9181 39 1 6.4433 -10.5678 -5.5690 40 1 5.6878 -12.1916 -7.2555 41 1 3.3441 -12.9380 -7.2951 42 1 1.7413 -12.0617 -5.6480 43 1 1.6688 -6.2093 -2.0788 44 1 3.4525 -6.1549 -1.7465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271235179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:16 Heat of formation + Delta-G solvation = -40.843891 kcal Electronic energy + Delta-G solvation = -27345.294894 eV Core-core repulsion = 23264.381515 eV Total energy + Delta-G solvation = -4080.913380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02415 -40.25308 -38.61774 -37.90328 -36.05805 -34.63555 -33.86542 -31.93161 -31.39842 -31.25491 -30.25397 -27.62031 -26.08952 -25.08124 -24.06258 -23.01958 -22.40521 -20.95667 -20.12625 -19.29591 -18.83071 -17.84956 -16.97371 -16.77175 -16.32529 -15.93480 -15.75358 -15.53408 -15.48192 -14.93336 -14.88478 -14.60619 -14.24743 -14.08990 -13.84731 -13.68201 -13.55060 -13.18823 -13.10366 -12.90210 -12.42238 -12.15684 -12.10679 -11.98530 -11.58136 -11.49970 -11.23845 -11.01219 -10.75067 -10.38610 -10.32165 -10.20673 -10.01515 -9.61994 -9.48772 -9.47673 -9.35818 -8.80981 -8.19994 -7.94658 -6.40270 -3.81005 0.39475 0.88882 2.47423 2.63103 3.18490 3.26920 3.33129 3.43458 3.61356 3.89676 3.93553 4.07476 4.21704 4.25524 4.33544 4.45946 4.48502 4.65344 4.84213 4.88695 5.00257 5.07028 5.18658 5.24001 5.28142 5.33544 5.40845 5.49947 5.54169 5.61084 5.68492 5.74944 5.80948 5.88919 5.90805 5.96112 5.97165 6.26123 6.39257 6.49360 6.97207 7.10112 7.34218 7.56470 7.77502 8.07508 8.63766 9.19982 9.56127 10.08700 10.77638 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.001990 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.548901 B =14066.938699 C =14624.840921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.447 3.553 11 O -0.574 6.574 12 C 0.005 3.995 13 N -0.425 5.425 14 C 0.012 3.988 15 C 0.089 3.911 16 O -0.515 6.515 17 C 0.105 3.895 18 N -0.725 5.725 19 C 0.561 3.439 20 O -0.533 6.533 21 C -0.136 4.136 22 C -0.086 4.086 23 C -0.126 4.126 24 C -0.094 4.094 25 C -0.128 4.128 26 C -0.060 4.060 27 C -0.019 4.019 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.369 0.631 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.397 0.603 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.076 0.924 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 -24.637 -11.164 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.232 3.768 11 O -0.457 6.457 12 C -0.127 4.127 13 N -0.147 5.147 14 C -0.117 4.117 15 C 0.046 3.954 16 O -0.319 6.319 17 C -0.019 4.019 18 N -0.379 5.379 19 C 0.349 3.651 20 O -0.410 6.410 21 C -0.139 4.139 22 C -0.105 4.105 23 C -0.144 4.144 24 C -0.112 4.112 25 C -0.146 4.146 26 C -0.079 4.079 27 C -0.148 4.148 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.216 0.784 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.234 0.766 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.094 0.906 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.013 -24.220 -10.110 26.719 hybrid contribution -0.319 0.801 -1.039 1.350 sum 4.694 -23.418 -11.149 26.358 Atomic orbital electron populations 1.69608 1.05912 1.28104 1.50842 1.25255 0.95648 0.99692 0.97448 0.85859 0.79254 0.80836 0.78342 1.20456 1.20931 1.19417 1.19693 0.93342 0.82219 1.47461 0.87973 1.41871 1.09128 1.04571 1.64889 1.19630 0.88381 0.84343 0.84473 1.90530 1.13638 1.86927 1.54594 1.22562 0.94720 0.93239 1.02177 1.68900 1.30091 0.99758 1.15948 1.23999 0.96319 0.91173 1.00240 1.22553 0.86401 0.91343 0.95075 1.86693 1.28030 1.80264 1.36926 1.21993 0.92348 0.97745 0.89828 1.45811 1.13837 1.45412 1.32844 1.18275 0.87682 0.78561 0.80604 1.90792 1.18527 1.58987 1.72722 1.19934 0.93986 1.01330 0.98639 1.21337 0.92297 0.98409 0.98416 1.21155 1.00047 0.97759 0.95463 1.21426 0.96054 0.96036 0.97733 1.21201 0.93484 1.00683 0.99260 1.21312 1.00483 0.93736 0.92331 1.24644 1.03875 0.93347 0.92944 0.91915 0.77554 0.92175 0.89140 0.88362 0.89823 0.78401 0.89891 0.89732 0.76634 0.85570 0.85148 0.85457 0.85211 0.84587 0.90581 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.57 5.29 -10.96 -0.06 -14.63 16 10 C 0.45 10.79 7.85 -10.98 -0.09 10.70 16 11 O -0.57 -16.12 16.01 5.54 0.09 -16.03 16 12 C 0.01 0.09 5.30 -4.97 -0.03 0.06 16 13 N -0.43 -7.12 5.82 -246.08 -1.43 -8.55 16 14 C 0.01 0.15 7.11 -7.55 -0.05 0.10 16 15 C 0.09 0.97 1.72 -90.09 -0.15 0.82 16 16 O -0.52 -5.86 13.55 -35.23 -0.48 -6.34 16 17 C 0.11 0.98 5.42 -4.04 -0.02 0.96 16 18 N -0.72 -6.04 5.29 -61.25 -0.32 -6.37 16 19 C 0.56 5.88 7.77 -12.33 -0.10 5.78 16 20 O -0.53 -7.45 16.35 5.32 0.09 -7.36 16 21 C -0.14 -1.17 5.87 -104.96 -0.62 -1.79 16 22 C -0.09 -0.56 9.54 -39.19 -0.37 -0.93 16 23 C -0.13 -0.71 10.03 -39.64 -0.40 -1.11 16 24 C -0.09 -0.52 10.04 -39.49 -0.40 -0.91 16 25 C -0.13 -0.80 10.03 -39.64 -0.40 -1.19 16 26 C -0.06 -0.49 9.60 -39.19 -0.38 -0.87 16 27 C -0.02 -0.26 7.13 -7.55 -0.05 -0.31 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 30 H 0.06 0.93 7.30 -51.93 -0.38 0.55 16 31 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 34 H 0.37 2.59 7.22 45.56 0.33 2.92 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 37 H 0.40 2.33 4.99 -40.82 -0.20 2.13 16 38 H 0.13 0.53 6.40 -52.49 -0.34 0.19 16 39 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 42 H 0.14 1.13 7.65 -52.49 -0.40 0.73 16 43 H 0.08 0.96 7.21 -51.92 -0.37 0.58 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -36.92 375.41 -9.02 -45.94 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -4.97 Total: 12.23 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -3.29 Total: 3.23 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -1.09 Total: -53.57 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.30 Total: -29.72 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.92 -9.02 -45.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271235179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.099 kcal (2) G-P(sol) polarization free energy of solvation -36.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds