Wall clock time and date at job start Tue Mar 31 2020 17:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99737 * 2 1 4 4 H 1.48505 * 109.47426 * 270.00007 * 3 2 1 5 5 H 1.48508 * 109.47221 * 29.99965 * 3 2 1 6 6 H 1.48500 * 109.47305 * 149.99667 * 3 2 1 7 7 C 1.38946 * 120.00538 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00528 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99819 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00523 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99905 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46862 * 180.02562 * 12 10 9 14 14 C 1.47486 * 110.99695 * 170.00231 * 13 12 10 15 15 C 1.53506 * 87.93221 * 138.70374 * 14 13 12 16 16 O 1.42905 * 114.16914 * 87.62400 * 15 14 13 17 17 C 1.52998 * 114.17302 * 220.32775 * 15 14 13 18 18 N 1.46496 * 109.47319 * 179.97438 * 17 15 14 19 19 C 1.34777 * 120.00109 * 180.02562 * 18 17 15 20 20 O 1.21551 * 120.00213 * 0.02562 * 19 18 17 21 21 C 1.47854 * 120.00135 * 180.02562 * 19 18 17 22 22 C 1.39581 * 120.14139 * 359.72386 * 21 19 18 23 23 C 1.37953 * 119.84517 * 179.79080 * 22 21 19 24 24 C 1.38353 * 120.15111 * 0.48832 * 23 22 21 25 25 C 1.38359 * 120.29002 * 359.73846 * 24 23 22 26 26 C 1.37956 * 120.14873 * 0.02709 * 25 24 23 27 27 C 1.47474 * 111.00271 * 265.97166 * 13 12 10 28 28 H 0.96996 * 120.00401 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99704 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.46486 * 60.00793 * 12 10 9 31 31 H 1.08997 * 109.47378 * 300.00892 * 12 10 9 32 32 H 1.09000 * 113.47378 * 253.47583 * 14 13 12 33 33 H 1.08999 * 113.47621 * 23.93774 * 14 13 12 34 34 H 0.96706 * 113.99595 * 180.02562 * 16 15 14 35 35 H 1.08994 * 109.47218 * 300.00624 * 17 15 14 36 36 H 1.09007 * 109.46827 * 60.00100 * 17 15 14 37 37 H 0.97002 * 120.00244 * 0.02562 * 18 17 15 38 38 H 1.07993 * 120.07081 * 0.02562 * 22 21 19 39 39 H 1.08005 * 119.92267 * 180.22858 * 23 22 21 40 40 H 1.08003 * 119.85611 * 179.72351 * 24 23 22 41 41 H 1.08004 * 119.92763 * 180.02562 * 25 24 23 42 42 H 1.07992 * 120.08021 * 179.97438 * 26 25 24 43 43 H 1.09008 * 113.47654 * 336.07031 * 27 13 12 44 44 H 1.09003 * 113.47610 * 106.47225 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5577 -0.0016 11 8 3.2104 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.5116 -7.2625 0.2358 15 6 2.4122 -7.8815 -0.8422 16 8 3.6609 -8.3724 -0.3502 17 6 1.6951 -8.8660 -1.7681 18 7 2.6449 -9.3913 -2.7520 19 6 2.2338 -10.2812 -3.6770 20 8 1.0750 -10.6476 -3.6952 21 6 3.1925 -10.8119 -4.6697 22 6 4.5226 -10.3890 -4.6552 23 6 5.4129 -10.8914 -5.5815 24 6 4.9878 -11.8047 -6.5297 25 6 3.6696 -12.2245 -6.5525 26 6 2.7700 -11.7336 -5.6289 27 6 2.4687 -6.4434 -1.3762 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6171 -4.9201 -0.8920 31 1 0.6176 -4.9213 0.8879 32 1 1.6846 -7.6690 1.2323 33 1 0.4562 -7.2470 -0.0365 34 1 4.2264 -8.7615 -1.0314 35 1 1.2889 -9.6884 -1.1795 36 1 0.8835 -8.3535 -2.2848 37 1 3.5696 -9.0988 -2.7378 38 1 4.8548 -9.6730 -3.9181 39 1 6.4433 -10.5678 -5.5690 40 1 5.6878 -12.1916 -7.2555 41 1 3.3441 -12.9380 -7.2951 42 1 1.7413 -12.0617 -5.6480 43 1 1.6688 -6.2093 -2.0788 44 1 3.4525 -6.1549 -1.7465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271235179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:13 Heat of formation + Delta-G solvation = -72.438796 kcal Electronic energy + Delta-G solvation = -27346.664952 eV Core-core repulsion = 23264.381515 eV Total energy + Delta-G solvation = -4082.283437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98316 -41.06306 -39.81092 -39.16862 -37.10466 -35.91529 -35.45887 -33.30671 -32.54774 -31.88046 -31.40378 -28.74197 -27.11820 -26.80475 -24.94165 -23.80182 -23.23382 -21.66680 -21.12541 -20.98409 -19.93336 -19.51992 -17.85933 -17.70096 -17.48344 -17.05635 -16.72136 -16.60026 -16.49503 -16.33228 -15.76287 -15.68965 -15.42348 -15.31413 -15.00651 -14.63418 -14.49824 -14.25558 -14.09743 -13.73343 -13.66259 -13.45928 -13.39309 -13.06066 -12.92872 -12.61861 -12.43490 -12.33454 -12.13576 -12.02904 -11.79023 -11.50890 -11.13988 -10.96760 -10.42519 -10.36206 -10.01953 -9.95252 -9.90235 -9.73151 -8.47435 -5.96272 -0.15722 0.41672 1.36965 1.40481 1.53479 1.79616 1.91093 2.04862 2.27820 2.68917 2.86800 2.90907 3.16323 3.19397 3.37677 3.55639 3.65730 3.89787 3.98611 4.01968 4.15851 4.22430 4.25198 4.36819 4.44659 4.46584 4.52295 4.54300 4.59340 4.64297 4.75193 4.85422 4.87911 5.05844 5.14961 5.32766 5.34428 5.39925 5.44785 5.51857 5.85192 5.94541 6.05547 6.30355 6.60065 6.64322 7.03725 7.12382 7.55775 8.12515 8.69969 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.001990 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.548901 B =14066.938699 C =14624.840921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.620 6.620 12 C 0.019 3.981 13 N -0.468 5.468 14 C 0.014 3.986 15 C 0.113 3.887 16 O -0.532 6.532 17 C 0.114 3.886 18 N -0.714 5.714 19 C 0.559 3.441 20 O -0.576 6.576 21 C -0.158 4.158 22 C -0.088 4.088 23 C -0.130 4.130 24 C -0.092 4.092 25 C -0.132 4.132 26 C -0.079 4.079 27 C -0.024 4.024 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.387 0.613 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.410 0.590 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.089 0.911 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -25.298 -11.975 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.505 6.505 12 C -0.113 4.113 13 N -0.190 5.190 14 C -0.115 4.115 15 C 0.071 3.929 16 O -0.339 6.339 17 C -0.010 4.010 18 N -0.368 5.368 19 C 0.349 3.651 20 O -0.457 6.457 21 C -0.161 4.161 22 C -0.106 4.106 23 C -0.148 4.148 24 C -0.110 4.110 25 C -0.150 4.150 26 C -0.099 4.099 27 C -0.153 4.153 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.237 0.763 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.248 0.752 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.167 0.833 42 H 0.141 0.859 43 H 0.107 0.893 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.554 -24.892 -10.924 27.745 hybrid contribution -0.403 0.946 -0.814 1.311 sum 5.150 -23.947 -11.738 27.162 Atomic orbital electron populations 1.69666 1.06771 1.29287 1.50395 1.26041 0.96590 1.02394 0.96335 0.84929 0.77849 0.76873 0.78685 1.19529 1.19455 1.19907 1.19639 0.92618 0.84080 1.49952 0.90544 1.41946 1.09284 1.04678 1.65426 1.20791 0.88254 0.85947 0.82132 1.90491 1.15981 1.87930 1.56136 1.22437 0.94391 0.90128 1.04347 1.68832 1.31194 1.01014 1.17966 1.24116 0.97924 0.88685 1.00771 1.22249 0.86216 0.90190 0.94277 1.86656 1.28568 1.80352 1.38357 1.21850 0.92222 0.97302 0.89640 1.45694 1.14362 1.44667 1.32059 1.18614 0.87429 0.78254 0.80832 1.90761 1.20325 1.60644 1.73979 1.19916 0.94672 1.02558 0.98931 1.21594 0.91426 0.98527 0.99067 1.21524 1.01039 0.97345 0.94889 1.21813 0.96050 0.95282 0.97843 1.21454 0.93675 1.00817 0.99060 1.21391 1.00534 0.94550 0.93376 1.24728 1.03296 0.95157 0.92104 0.91293 0.76983 0.89501 0.87168 0.88426 0.86934 0.76326 0.89649 0.89653 0.75173 0.83590 0.82763 0.82821 0.83344 0.85861 0.89285 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.02 13.05 21.66 0.28 -49.73 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.33 -19.27 9.68 84.04 0.81 -18.45 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.58 -30.05 5.29 -306.98 -1.62 -31.67 16 10 C 0.44 21.60 7.85 87.66 0.69 22.29 16 11 O -0.62 -35.83 16.01 -3.08 -0.05 -35.87 16 12 C 0.02 0.64 5.30 85.56 0.45 1.09 16 13 N -0.47 -15.21 5.82 -932.85 -5.43 -20.64 16 14 C 0.01 0.31 7.11 83.57 0.59 0.90 16 15 C 0.11 2.30 1.72 -10.45 -0.02 2.28 16 16 O -0.53 -11.33 13.55 -148.98 -2.02 -13.35 16 17 C 0.11 1.96 5.42 86.38 0.47 2.43 16 18 N -0.71 -11.08 5.29 -465.98 -2.47 -13.54 16 19 C 0.56 11.61 7.77 86.79 0.67 12.29 16 20 O -0.58 -16.44 16.35 -3.88 -0.06 -16.50 16 21 C -0.16 -2.66 5.87 -20.08 -0.12 -2.78 16 22 C -0.09 -0.99 9.54 22.53 0.21 -0.77 16 23 C -0.13 -1.14 10.03 22.23 0.22 -0.91 16 24 C -0.09 -0.78 10.04 22.33 0.22 -0.55 16 25 C -0.13 -1.47 10.03 22.23 0.22 -1.25 16 26 C -0.08 -1.31 9.60 22.53 0.22 -1.09 16 27 C -0.02 -0.62 7.13 83.57 0.60 -0.03 16 28 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 30 H 0.09 2.51 7.30 -2.39 -0.02 2.49 16 31 H 0.11 3.33 8.08 -2.39 -0.02 3.31 16 32 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.11 1.88 7.87 -2.39 -0.02 1.86 16 34 H 0.39 4.77 7.22 -74.05 -0.53 4.23 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.51 7.90 -2.38 -0.02 1.49 16 37 H 0.41 4.15 4.99 -92.71 -0.46 3.69 16 38 H 0.15 0.90 6.40 -2.91 -0.02 0.88 16 39 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.15 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.12 2.23 7.65 -2.91 -0.02 2.21 16 43 H 0.09 2.10 7.21 -2.38 -0.02 2.08 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -82.07 375.41 -4.28 -86.35 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.66 Total: 34.36 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 5.72 Total: 15.16 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -9.24 Total: -115.59 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: -2.13 Total: -65.73 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -82.07 -4.28 -86.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271235179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds