Wall clock time and date at job start Tue Mar 31 2020 18:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86792 * 119.99961 * 2 1 4 4 H 1.48499 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47094 * 299.99993 * 3 2 1 6 6 H 1.48499 * 109.47609 * 59.99785 * 3 2 1 7 7 C 1.38627 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99992 * 179.97438 * 7 2 1 9 9 O 1.34810 * 120.00328 * 0.02562 * 7 2 1 10 10 C 1.35787 * 117.00365 * 185.03833 * 9 7 2 11 11 C 1.38903 * 119.99793 * 174.34012 * 10 9 7 12 12 C 1.38012 * 119.99674 * 179.76692 * 11 10 9 13 13 C 1.38912 * 120.00076 * 0.53339 * 12 11 10 14 14 N 1.40018 * 120.00374 * 179.70057 * 13 12 11 15 15 C 1.34773 * 120.00193 * 35.16165 * 14 13 12 16 16 O 1.21589 * 120.00071 * 355.43098 * 15 14 13 17 17 N 1.34777 * 120.00564 * 175.42847 * 15 14 13 18 18 C 1.42105 * 121.48040 * 179.72027 * 17 15 14 19 19 C 1.55825 * 114.96280 * 276.30015 * 18 17 15 20 20 C 1.56368 * 107.18871 * 322.03193 * 19 18 17 21 21 N 1.42104 * 114.62192 * 322.01706 * 20 19 18 22 22 C 1.34774 * 121.47673 * 276.09704 * 21 20 19 23 23 O 1.21290 * 119.99691 * 0.02562 * 22 21 20 24 24 C 1.48554 * 117.05504 * 96.11580 * 21 20 19 25 25 C 1.45868 * 109.64530 * 279.57974 * 24 21 20 26 26 C 1.38911 * 119.99679 * 359.72186 * 13 12 11 27 27 C 1.38018 * 119.99799 * 0.02562 * 26 13 12 28 28 H 0.96999 * 119.99990 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00570 * 0.02562 * 11 10 9 30 30 H 1.07999 * 120.00068 * 180.25485 * 12 11 10 31 31 H 0.97001 * 120.00033 * 215.16713 * 14 13 12 32 32 H 1.08998 * 108.45209 * 37.45302 * 18 17 15 33 33 H 1.09004 * 108.44706 * 154.78306 * 18 17 15 34 34 H 1.09000 * 109.96777 * 202.59690 * 19 18 17 35 35 H 1.08996 * 109.96900 * 81.46671 * 19 18 17 36 36 H 1.09003 * 108.45149 * 200.68917 * 20 19 18 37 37 H 1.08994 * 108.32391 * 83.25995 * 20 19 18 38 38 H 1.07998 * 120.00424 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.43906 * 159.52515 * 24 21 20 40 40 H 1.09000 * 109.41201 * 39.61323 * 24 21 20 41 41 H 1.09000 * 109.44011 * 293.87635 * 25 24 21 42 42 H 1.09003 * 109.43834 * 173.98944 * 25 24 21 43 43 H 1.08002 * 120.00347 * 180.02562 * 26 13 12 44 44 H 1.07999 * 119.99680 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3965 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0703 -3.5045 0.1073 11 6 1.4353 -4.7336 0.2321 12 6 2.1827 -5.8891 0.3358 13 6 3.5702 -5.8220 0.3265 14 7 4.3286 -6.9937 0.4380 15 6 3.8902 -8.1365 -0.1261 16 8 2.7983 -8.1711 -0.6599 17 7 4.6620 -9.2410 -0.0986 18 6 4.2285 -10.4639 -0.6783 19 6 3.3154 -11.3369 0.2339 20 6 3.8622 -11.2085 1.6933 21 7 5.2790 -11.1624 1.7928 22 6 6.0203 -12.2878 1.8093 23 8 5.4797 -13.3712 1.7379 24 6 5.9069 -9.8188 1.8783 25 6 6.0011 -9.2357 0.5446 26 6 4.2053 -4.5923 0.2070 27 6 3.4576 -3.4373 0.0981 28 1 -0.4850 0.8400 -0.0004 29 1 0.3566 -4.7854 0.2438 30 1 1.6890 -6.8451 0.4287 31 1 5.1696 -6.9830 0.9214 32 1 3.6782 -10.2368 -1.5914 33 1 5.1080 -11.0493 -0.9467 34 1 3.3551 -12.3779 -0.0868 35 1 2.2886 -10.9741 0.1893 36 1 3.5032 -12.0595 2.2723 37 1 3.4555 -10.2978 2.1327 38 1 7.0957 -12.2250 1.8862 39 1 6.9056 -9.9116 2.3051 40 1 5.2991 -9.1746 2.5138 41 1 6.6957 -9.8203 -0.0587 42 1 6.3626 -8.2103 0.6216 43 1 5.2840 -4.5401 0.1994 44 1 3.9514 -2.4813 0.0048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330662063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:48 Heat of formation + Delta-G solvation = -56.134996 kcal Electronic energy + Delta-G solvation = -28381.990366 eV Core-core repulsion = 24300.413915 eV Total energy + Delta-G solvation = -4081.576452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10263 -40.91485 -40.29601 -38.67650 -37.80185 -35.67517 -35.42113 -34.19479 -33.68478 -31.82774 -30.09233 -29.26073 -27.64567 -27.07676 -24.53124 -24.40779 -23.80821 -22.66827 -21.08297 -20.68734 -19.85619 -19.42167 -18.92931 -18.20077 -17.61298 -17.44906 -16.98530 -16.40411 -16.32362 -15.98996 -15.77708 -15.61628 -15.45550 -15.21666 -14.94660 -14.86806 -14.54048 -14.38259 -14.19613 -14.00359 -13.57264 -13.25813 -13.19097 -13.01470 -12.76691 -12.64834 -12.60592 -12.44492 -12.18943 -12.05708 -11.89225 -11.28851 -11.25618 -10.94134 -10.89929 -10.55145 -9.89665 -9.80252 -9.62702 -8.54318 -8.42734 -6.10189 0.56504 0.61613 1.38657 1.46268 1.54950 1.57421 1.76772 2.07504 2.19217 2.21081 2.85416 2.87043 3.19713 3.55750 3.70562 3.85098 3.96537 4.09439 4.13031 4.17842 4.20020 4.31662 4.36767 4.44906 4.53650 4.61288 4.69340 4.74899 4.80255 4.85203 4.90888 4.96152 4.99940 5.09446 5.24363 5.33210 5.43307 5.55834 5.59918 5.63913 5.73265 5.97235 6.06067 6.22973 6.47308 6.90881 7.01523 7.20379 7.53786 7.83682 8.80830 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.033934 B = 0.002174 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.933929 B =12878.664867 C =13277.134583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.028 4.028 3 Si 1.021 2.979 4 H -0.245 1.245 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.409 4.409 8 H 0.109 0.891 9 O -0.235 6.235 10 C 0.106 3.894 11 C -0.192 4.192 12 C -0.073 4.073 13 C 0.083 3.917 14 N -0.657 5.657 15 C 0.701 3.299 16 O -0.617 6.617 17 N -0.609 5.609 18 C 0.139 3.861 19 C -0.147 4.147 20 C 0.118 3.882 21 N -0.604 5.604 22 C 0.495 3.505 23 O -0.606 6.606 24 C 0.086 3.914 25 C 0.078 3.922 26 C -0.077 4.077 27 C -0.219 4.219 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.421 0.579 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.187 0.813 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.163 0.837 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.244 -19.570 4.950 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.225 4.225 3 Si 0.841 3.159 4 H -0.168 1.168 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.485 4.485 8 H 0.126 0.874 9 O -0.141 6.141 10 C 0.055 3.945 11 C -0.212 4.212 12 C -0.093 4.093 13 C -0.012 4.012 14 N -0.309 5.309 15 C 0.403 3.597 16 O -0.497 6.497 17 N -0.344 5.344 18 C 0.013 3.987 19 C -0.188 4.188 20 C -0.008 4.008 21 N -0.338 5.338 22 C 0.268 3.732 23 O -0.485 6.485 24 C -0.036 4.036 25 C -0.043 4.043 26 C -0.097 4.097 27 C -0.239 4.239 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.202 0.798 39 H 0.167 0.833 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.180 0.820 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 20.860 -20.060 4.506 29.289 hybrid contribution -0.571 0.786 -0.013 0.972 sum 20.288 -19.275 4.493 28.343 Atomic orbital electron populations 1.70223 1.08197 1.28630 1.49274 1.26653 0.96850 1.02955 0.96061 0.84486 0.78510 0.74657 0.78278 1.16794 1.19799 1.19586 1.21921 0.92723 0.81246 1.52633 0.87421 1.83963 1.36059 1.12607 1.81496 1.19869 0.91926 0.87561 0.95099 1.20253 0.99641 0.90418 1.10891 1.20832 0.93377 0.96731 0.98379 1.17096 0.89795 0.85670 1.08596 1.42137 1.25760 1.05976 1.56979 1.16019 0.83600 0.80893 0.79155 1.90933 1.22695 1.84287 1.51742 1.46406 1.18746 1.08130 1.61107 1.20639 0.99178 0.84014 0.94840 1.23406 0.99333 0.99905 0.96115 1.20754 0.82830 1.01357 0.95852 1.47925 1.06386 1.08175 1.71287 1.23643 0.94753 0.81430 0.73418 1.90726 1.76507 1.30253 1.51005 1.21481 1.02582 0.82050 0.97512 1.21593 0.82800 1.04932 0.94981 1.20813 1.00641 0.89290 0.98949 1.21123 0.92405 1.00059 1.10294 0.92004 0.87537 0.85331 0.73873 0.93528 0.88932 0.90804 0.92380 0.93016 0.91913 0.79802 0.83326 0.90146 0.86958 0.86585 0.81956 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.11 13.67 21.61 0.30 -56.82 16 2 C -0.03 -1.60 5.49 84.82 0.47 -1.14 16 3 Si 1.02 42.06 29.55 68.60 2.03 44.09 16 4 H -0.24 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.41 -23.40 9.48 67.91 0.64 -22.75 16 8 H 0.11 5.49 5.20 -2.91 -0.02 5.47 16 9 O -0.23 -14.16 9.76 -22.95 -0.22 -14.38 16 10 C 0.11 5.29 6.65 22.59 0.15 5.44 16 11 C -0.19 -8.79 9.99 22.38 0.22 -8.57 16 12 C -0.07 -2.82 8.69 22.38 0.19 -2.63 16 13 C 0.08 2.57 6.30 38.16 0.24 2.82 16 14 N -0.66 -13.73 5.23 -317.05 -1.66 -15.39 16 15 C 0.70 17.09 8.16 179.06 1.46 18.55 16 16 O -0.62 -21.99 13.53 -4.00 -0.05 -22.04 16 17 N -0.61 -9.07 2.25 -851.99 -1.92 -11.00 16 18 C 0.14 2.36 5.09 88.16 0.45 2.81 16 19 C -0.15 -2.75 6.96 32.74 0.23 -2.53 16 20 C 0.12 1.91 5.14 88.36 0.45 2.37 16 21 N -0.60 -5.38 2.24 -848.93 -1.90 -7.28 16 22 C 0.49 4.89 11.86 129.79 1.54 6.43 16 23 O -0.61 -13.56 16.93 -3.06 -0.05 -13.61 16 24 C 0.09 0.09 5.92 83.80 0.50 0.58 16 25 C 0.08 0.22 5.63 83.80 0.47 0.69 16 26 C -0.08 -2.33 9.96 22.38 0.22 -2.11 16 27 C -0.22 -8.92 9.16 22.38 0.20 -8.72 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.13 5.04 6.22 -2.91 -0.02 5.02 16 31 H 0.42 4.55 6.57 -92.71 -0.61 3.94 16 32 H 0.05 1.05 7.61 -2.39 -0.02 1.03 16 33 H 0.09 1.13 7.62 -2.39 -0.02 1.11 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.03 7.62 -2.39 -0.02 1.01 16 37 H 0.06 1.09 7.62 -2.39 -0.02 1.07 16 38 H 0.19 -0.27 8.04 -2.91 -0.02 -0.30 16 39 H 0.15 -1.17 8.01 -2.39 -0.02 -1.19 16 40 H 0.08 0.25 7.80 -2.39 -0.02 0.23 16 41 H 0.11 -0.12 7.80 -2.39 -0.02 -0.14 16 42 H 0.12 -0.16 6.17 -2.39 -0.01 -0.18 16 43 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 44 H 0.13 5.30 5.63 -2.91 -0.02 5.29 16 Total: -1.00 -90.32 361.58 4.40 -85.93 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.44 Total: 19.26 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 7.45 Total: -8.77 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -5.18 Total: -90.48 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -0.33 Total: -50.03 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -90.32 4.40 -85.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330662063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.792 kcal (2) G-P(sol) polarization free energy of solvation -90.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds