Wall clock time and date at job start Tue Mar 31 2020 17:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48503 * 109.47166 * 270.00253 * 3 2 1 5 5 H 1.48491 * 109.47250 * 30.00542 * 3 2 1 6 6 H 1.48499 * 109.46971 * 150.00452 * 3 2 1 7 7 C 1.38656 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99937 * 179.97438 * 7 2 1 9 9 O 1.34829 * 119.99660 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99744 * 185.05707 * 9 7 2 11 11 C 1.38879 * 120.06799 * 354.46686 * 10 9 7 12 12 C 1.38102 * 119.92759 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.07101 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.92847 * 180.02562 * 13 12 11 15 15 N 1.46503 * 109.47360 * 89.99544 * 14 13 12 16 16 C 1.34771 * 119.99976 * 179.97438 * 15 14 13 17 17 O 1.21344 * 120.00328 * 0.02562 * 16 15 14 18 18 C 1.49458 * 119.99779 * 179.97438 * 16 15 14 19 19 O 1.21344 * 119.99892 * 0.02562 * 18 16 15 20 20 N 1.34771 * 119.99779 * 180.02562 * 18 16 15 21 21 C 1.46503 * 119.99976 * 180.02562 * 20 18 16 22 22 H 1.08998 * 110.90444 * 322.58982 * 21 20 18 23 23 C 1.55142 * 110.99123 * 198.71852 * 21 20 18 24 24 C 1.54317 * 103.01961 * 206.25403 * 23 21 20 25 25 N 1.47440 * 107.23055 * 22.28692 * 24 23 21 26 26 C 1.47840 * 108.57280 * 0.98960 * 25 24 23 27 27 C 1.38293 * 120.13901 * 0.28601 * 13 12 11 28 28 C 1.38101 * 120.06708 * 359.46261 * 27 13 12 29 29 H 0.96997 * 120.00130 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.03840 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.96357 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.47184 * 329.99233 * 14 13 12 33 33 H 1.09000 * 109.46995 * 209.99541 * 14 13 12 34 34 H 0.97002 * 119.99694 * 0.02562 * 15 14 13 35 35 H 0.97000 * 120.00336 * 359.97438 * 20 18 16 36 36 H 1.09003 * 110.69861 * 87.87292 * 23 21 20 37 37 H 1.08998 * 110.70913 * 324.64151 * 23 21 20 38 38 H 1.09001 * 109.89283 * 262.88148 * 24 23 21 39 39 H 1.08997 * 110.02303 * 141.76720 * 24 23 21 40 40 H 1.00906 * 111.00129 * 123.26224 * 25 24 23 41 41 H 1.08997 * 110.37486 * 94.72992 * 26 25 24 42 42 H 1.08999 * 110.37464 * 217.07681 * 26 25 24 43 43 H 1.07997 * 119.96684 * 179.70681 * 27 13 12 44 44 H 1.08002 * 120.03734 * 180.26932 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5471 1.4401 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 3.4571 -3.4394 0.0921 12 6 4.2023 -4.5972 0.1997 13 6 3.5686 -5.8204 0.3212 14 6 4.3850 -7.0817 0.4390 15 7 4.6567 -7.3575 1.8519 16 6 5.3753 -8.4430 2.2006 17 8 5.7977 -9.1918 1.3442 18 6 5.6530 -8.7240 3.6420 19 8 5.2310 -7.9749 4.4984 20 7 6.3720 -9.8092 3.9906 21 6 6.6438 -10.0850 5.4036 22 1 6.8242 -9.1608 5.9525 23 6 7.8358 -11.0656 5.5592 24 6 7.5525 -11.7448 6.9155 25 7 6.1090 -11.6046 7.1811 26 6 5.4878 -10.8937 6.0434 27 6 2.1874 -5.8891 0.3295 28 6 1.4366 -4.7346 0.2275 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4845 -0.0024 31 1 5.2811 -4.5472 0.1889 32 1 5.3272 -6.9558 -0.0944 33 1 3.8310 -7.9148 0.0062 34 1 4.3188 -6.7591 2.5366 35 1 6.7090 -10.4082 3.3061 36 1 8.7802 -10.5223 5.5900 37 1 7.8386 -11.7999 4.7536 38 1 8.1238 -11.2533 7.7030 39 1 7.8198 -12.8004 6.8674 40 1 5.6781 -12.5059 7.3231 41 1 5.0815 -11.6071 5.3264 42 1 4.7053 -10.2223 6.3970 43 1 1.6955 -6.8463 0.4198 44 1 0.3580 -4.7884 0.2384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331588156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:06 Heat of formation + Delta-G solvation = -65.954387 kcal Electronic energy + Delta-G solvation = -26847.229030 eV Core-core repulsion = 22765.226778 eV Total energy + Delta-G solvation = -4082.002252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89662 -39.45943 -39.02369 -38.12940 -36.94045 -35.04740 -34.12844 -32.39431 -30.34990 -30.22282 -30.08187 -28.88461 -26.38350 -25.28220 -23.78862 -22.09292 -21.98635 -21.37927 -20.72212 -20.47137 -18.80343 -18.09717 -17.61274 -17.06147 -16.74789 -16.31420 -15.91863 -15.44729 -15.00511 -14.86755 -14.59316 -14.23084 -14.20804 -13.92400 -13.79687 -13.73310 -13.69626 -13.40799 -12.84948 -12.80336 -12.53995 -12.29766 -12.16768 -11.98830 -11.85205 -11.71571 -11.41871 -11.36359 -10.99136 -10.85663 -10.72856 -10.50131 -9.81209 -9.64962 -9.45711 -9.22237 -8.95727 -8.92955 -8.31537 -7.36673 -6.54638 -4.13435 1.25964 1.86741 2.10709 2.34272 3.05446 3.07650 3.09163 3.14023 3.45517 3.84463 3.89352 3.99067 4.20350 4.34200 4.47277 4.52165 4.74163 4.81335 4.99489 5.08432 5.09040 5.17379 5.23054 5.32035 5.36521 5.49766 5.59219 5.60654 5.72409 5.76399 5.87400 6.09366 6.18994 6.29445 6.30792 6.56121 6.72216 6.77222 6.80923 6.92696 7.09898 7.22250 7.26643 7.32833 7.57694 7.68233 7.87015 7.89895 8.90566 9.58003 10.62699 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021132 B = 0.001828 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.678988 B =15315.180182 C =15764.328545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.162 3.838 11 C -0.237 4.237 12 C -0.048 4.048 13 C -0.221 4.221 14 C 0.177 3.823 15 N -0.686 5.686 16 C 0.502 3.498 17 O -0.530 6.530 18 C 0.508 3.492 19 O -0.511 6.511 20 N -0.698 5.698 21 C 0.135 3.865 22 H 0.108 0.892 23 C -0.150 4.150 24 C 0.048 3.952 25 N -0.682 5.682 26 C 0.034 3.966 27 C -0.052 4.052 28 C -0.195 4.195 29 H 0.272 0.728 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.413 0.587 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.343 0.657 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.971 -21.373 8.829 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.107 3.893 11 C -0.256 4.256 12 C -0.067 4.067 13 C -0.222 4.222 14 C 0.056 3.944 15 N -0.339 5.339 16 C 0.282 3.718 17 O -0.408 6.408 18 C 0.289 3.711 19 O -0.385 6.385 20 N -0.352 5.352 21 C 0.029 3.971 22 H 0.126 0.874 23 C -0.189 4.189 24 C -0.082 4.082 25 N -0.312 5.312 26 C -0.097 4.097 27 C -0.071 4.071 28 C -0.214 4.214 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.252 0.748 35 H 0.249 0.751 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.159 0.841 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.565 -20.534 9.223 26.282 hybrid contribution 0.475 0.135 -0.734 0.884 sum 14.040 -20.400 8.489 26.179 Atomic orbital electron populations 1.70031 1.06023 1.27933 1.45208 1.25329 0.95873 0.98971 0.96283 0.85685 0.78964 0.79862 0.78796 1.19784 1.20156 1.19097 1.21368 0.91900 0.80686 1.53026 0.88858 1.83978 1.34549 1.11590 1.77266 1.19449 0.90327 0.88058 0.91455 1.21159 0.93776 0.98965 1.11733 1.20641 0.98411 0.91601 0.96031 1.19125 0.93570 0.93400 1.16125 1.20154 0.99012 0.95496 0.79749 1.46266 1.51703 1.25277 1.10625 1.20028 0.80348 0.82648 0.88762 1.90747 1.51243 1.47547 1.51259 1.20360 0.79251 0.81683 0.89806 1.90804 1.49342 1.46862 1.51472 1.45661 1.54195 1.26732 1.08589 1.22181 0.94263 0.99591 0.81046 0.87389 1.23077 0.98776 0.98543 0.98528 1.22574 0.89810 0.99825 0.95950 1.61799 1.02999 1.25088 1.41292 1.23242 0.97432 0.97320 0.91666 1.20526 0.92686 0.96918 0.96943 1.20216 0.99732 0.90210 1.11271 0.91832 0.85329 0.87318 0.90887 0.90852 0.74828 0.75065 0.89552 0.90504 0.90126 0.92397 0.84064 0.93279 0.89248 0.86883 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.59 13.67 55.48 0.76 -23.83 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.69 9.49 30.89 0.29 -10.39 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.74 9.76 0.05 0.00 -4.74 16 10 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.24 -4.88 9.17 -39.39 -0.36 -5.24 16 12 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 13 C -0.22 -3.46 5.25 -104.58 -0.55 -4.01 16 14 C 0.18 2.34 5.80 -5.19 -0.03 2.31 16 15 N -0.69 -8.77 5.54 -61.91 -0.34 -9.11 16 16 C 0.50 6.35 7.89 -11.58 -0.09 6.26 16 17 O -0.53 -7.47 16.48 5.50 0.09 -7.38 16 18 C 0.51 5.92 7.89 -11.58 -0.09 5.83 16 19 O -0.51 -7.20 16.22 5.50 0.09 -7.11 16 20 N -0.70 -6.02 5.22 -52.16 -0.27 -6.29 16 21 C 0.13 1.04 3.31 -65.79 -0.22 0.82 16 22 H 0.11 1.01 7.73 -51.93 -0.40 0.61 16 23 C -0.15 -0.76 6.57 -24.91 -0.16 -0.93 16 24 C 0.05 0.24 7.58 -2.84 -0.02 0.22 16 25 N -0.68 -4.52 7.39 -110.80 -0.82 -5.34 16 26 C 0.03 0.26 7.26 -2.30 -0.02 0.24 16 27 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 28 C -0.19 -3.90 9.99 -39.39 -0.39 -4.30 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.41 5.37 7.94 -40.82 -0.32 5.05 16 35 H 0.41 3.01 7.99 -40.82 -0.33 2.68 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.32 8.00 -51.93 -0.42 -0.09 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.34 1.73 8.91 -39.29 -0.35 1.38 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -31.41 377.64 -8.34 -39.75 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.74 Total: 10.52 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.77 Total: -7.17 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.68 Total: -44.57 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.18 Total: -19.23 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.41 -8.34 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331588156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.202 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds