Wall clock time and date at job start Tue Mar 31 2020 17:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48503 * 109.47166 * 270.00253 * 3 2 1 5 5 H 1.48491 * 109.47250 * 30.00542 * 3 2 1 6 6 H 1.48499 * 109.46971 * 150.00452 * 3 2 1 7 7 C 1.38656 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99937 * 179.97438 * 7 2 1 9 9 O 1.34829 * 119.99660 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99744 * 185.05707 * 9 7 2 11 11 C 1.38879 * 120.06799 * 354.46686 * 10 9 7 12 12 C 1.38102 * 119.92759 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.07101 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.92847 * 180.02562 * 13 12 11 15 15 N 1.46503 * 109.47360 * 89.99544 * 14 13 12 16 16 C 1.34771 * 119.99976 * 179.97438 * 15 14 13 17 17 O 1.21344 * 120.00328 * 0.02562 * 16 15 14 18 18 C 1.49458 * 119.99779 * 179.97438 * 16 15 14 19 19 O 1.21344 * 119.99892 * 0.02562 * 18 16 15 20 20 N 1.34771 * 119.99779 * 180.02562 * 18 16 15 21 21 C 1.46503 * 119.99976 * 180.02562 * 20 18 16 22 22 H 1.08998 * 110.90444 * 322.58982 * 21 20 18 23 23 C 1.55142 * 110.99123 * 198.71852 * 21 20 18 24 24 C 1.54317 * 103.01961 * 206.25403 * 23 21 20 25 25 N 1.47440 * 107.23055 * 22.28692 * 24 23 21 26 26 C 1.47840 * 108.57280 * 0.98960 * 25 24 23 27 27 C 1.38293 * 120.13901 * 0.28601 * 13 12 11 28 28 C 1.38101 * 120.06708 * 359.46261 * 27 13 12 29 29 H 0.96997 * 120.00130 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.03840 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.96357 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.47184 * 329.99233 * 14 13 12 33 33 H 1.09000 * 109.46995 * 209.99541 * 14 13 12 34 34 H 0.97002 * 119.99694 * 0.02562 * 15 14 13 35 35 H 0.97000 * 120.00336 * 359.97438 * 20 18 16 36 36 H 1.09003 * 110.69861 * 87.87292 * 23 21 20 37 37 H 1.08998 * 110.70913 * 324.64151 * 23 21 20 38 38 H 1.09001 * 109.89283 * 262.88148 * 24 23 21 39 39 H 1.08997 * 110.02303 * 141.76720 * 24 23 21 40 40 H 1.00906 * 111.00129 * 123.26224 * 25 24 23 41 41 H 1.08997 * 110.37486 * 94.72992 * 26 25 24 42 42 H 1.08999 * 110.37464 * 217.07681 * 26 25 24 43 43 H 1.07997 * 119.96684 * 179.70681 * 27 13 12 44 44 H 1.08002 * 120.03734 * 180.26932 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5471 1.4401 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 3.4571 -3.4394 0.0921 12 6 4.2023 -4.5972 0.1997 13 6 3.5686 -5.8204 0.3212 14 6 4.3850 -7.0817 0.4390 15 7 4.6567 -7.3575 1.8519 16 6 5.3753 -8.4430 2.2006 17 8 5.7977 -9.1918 1.3442 18 6 5.6530 -8.7240 3.6420 19 8 5.2310 -7.9749 4.4984 20 7 6.3720 -9.8092 3.9906 21 6 6.6438 -10.0850 5.4036 22 1 6.8242 -9.1608 5.9525 23 6 7.8358 -11.0656 5.5592 24 6 7.5525 -11.7448 6.9155 25 7 6.1090 -11.6046 7.1811 26 6 5.4878 -10.8937 6.0434 27 6 2.1874 -5.8891 0.3295 28 6 1.4366 -4.7346 0.2275 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4845 -0.0024 31 1 5.2811 -4.5472 0.1889 32 1 5.3272 -6.9558 -0.0944 33 1 3.8310 -7.9148 0.0062 34 1 4.3188 -6.7591 2.5366 35 1 6.7090 -10.4082 3.3061 36 1 8.7802 -10.5223 5.5900 37 1 7.8386 -11.7999 4.7536 38 1 8.1238 -11.2533 7.7030 39 1 7.8198 -12.8004 6.8674 40 1 5.6781 -12.5059 7.3231 41 1 5.0815 -11.6071 5.3264 42 1 4.7053 -10.2223 6.3970 43 1 1.6955 -6.8463 0.4198 44 1 0.3580 -4.7884 0.2384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331588156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:56 Heat of formation + Delta-G solvation = -91.435170 kcal Electronic energy + Delta-G solvation = -26848.333960 eV Core-core repulsion = 22765.226778 eV Total energy + Delta-G solvation = -4083.107182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 6.80 seconds Orbital eigenvalues (eV) -41.83303 -40.86388 -40.07129 -38.95609 -38.50349 -36.10224 -35.05486 -34.28270 -31.86812 -31.54678 -30.70052 -29.51905 -27.87045 -26.87317 -24.85814 -23.66775 -22.53247 -22.20270 -22.01652 -21.35935 -19.93868 -19.70356 -18.83720 -18.32645 -17.57134 -17.15374 -16.87587 -16.53321 -16.35649 -16.25669 -15.94233 -15.55233 -15.42708 -15.28629 -14.90947 -14.66194 -14.42086 -14.40536 -14.27425 -14.17268 -13.68135 -13.33469 -13.13678 -13.07613 -12.90995 -12.69242 -12.55146 -12.50406 -12.38988 -12.26961 -12.12940 -11.84896 -11.21672 -10.89222 -10.75216 -10.42497 -10.27224 -9.82415 -9.44421 -9.03718 -8.49257 -6.17571 0.29642 0.47548 0.56847 1.32319 1.35309 1.45014 1.52529 2.09337 2.16422 2.53024 2.85271 3.14468 3.30729 3.39821 3.47353 3.54717 3.70723 3.81624 4.00995 4.01791 4.15776 4.19853 4.34945 4.42506 4.54720 4.62249 4.66990 4.78586 4.79291 4.86312 4.92122 5.02205 5.06302 5.12413 5.13615 5.24602 5.24954 5.49962 5.67904 5.71516 5.79375 5.89297 6.00405 6.14699 6.30531 6.40054 6.67645 6.89655 6.95468 7.74322 8.73468 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021132 B = 0.001828 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.678988 B =15315.180182 C =15764.328545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.246 4.246 12 C -0.044 4.044 13 C -0.188 4.188 14 C 0.182 3.818 15 N -0.687 5.687 16 C 0.509 3.491 17 O -0.541 6.541 18 C 0.510 3.490 19 O -0.541 6.541 20 N -0.679 5.679 21 C 0.130 3.870 22 H 0.089 0.911 23 C -0.141 4.141 24 C 0.047 3.953 25 N -0.694 5.694 26 C 0.038 3.962 27 C -0.042 4.042 28 C -0.206 4.206 29 H 0.273 0.727 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.415 0.585 35 H 0.422 0.578 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.352 0.648 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.150 0.850 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.034 -24.208 9.073 30.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.265 4.265 12 C -0.063 4.063 13 C -0.189 4.189 14 C 0.060 3.940 15 N -0.339 5.339 16 C 0.289 3.711 17 O -0.419 6.419 18 C 0.291 3.709 19 O -0.417 6.417 20 N -0.333 5.333 21 C 0.024 3.976 22 H 0.107 0.893 23 C -0.179 4.179 24 C -0.082 4.082 25 N -0.325 5.325 26 C -0.093 4.093 27 C -0.061 4.061 28 C -0.226 4.226 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.252 0.748 35 H 0.260 0.740 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.170 0.830 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.168 0.832 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.686 -23.465 9.468 30.309 hybrid contribution -0.316 0.559 -0.748 0.986 sum 16.370 -22.906 8.720 29.473 Atomic orbital electron populations 1.70175 1.08023 1.28880 1.48499 1.26590 0.96842 1.02775 0.95767 0.84591 0.77831 0.74577 0.79271 1.18758 1.19691 1.17641 1.21839 0.92592 0.81325 1.53267 0.87874 1.83948 1.36091 1.12691 1.80731 1.20021 0.91679 0.87982 0.93113 1.21261 0.93023 1.00160 1.12052 1.20983 0.99955 0.90723 0.94620 1.19484 0.93512 0.94201 1.11751 1.20149 0.99348 0.94217 0.80267 1.46120 1.51901 1.25506 1.10325 1.20071 0.79822 0.82188 0.89012 1.90749 1.51693 1.47868 1.51630 1.20216 0.79488 0.82173 0.89068 1.90805 1.50895 1.48100 1.51938 1.45610 1.52636 1.25671 1.09392 1.22246 0.95753 0.99508 0.80048 0.89284 1.23069 0.97734 0.98077 0.99034 1.22636 0.88668 1.01084 0.95825 1.61734 1.04020 1.25824 1.40929 1.23101 0.96904 0.97171 0.92115 1.20920 0.93106 0.97106 0.94943 1.20469 1.00155 0.90441 1.11498 0.91785 0.86146 0.84037 0.89555 0.89313 0.74814 0.73965 0.88665 0.88931 0.90344 0.90387 0.83030 0.92500 0.91612 0.83222 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.76 13.67 21.61 0.30 -55.46 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 3 Si 1.02 42.30 29.55 68.60 2.03 44.33 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.41 -23.68 9.49 67.92 0.64 -23.04 16 8 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 9 O -0.23 -13.48 9.76 -22.75 -0.22 -13.70 16 10 C 0.12 5.91 6.65 22.58 0.15 6.06 16 11 C -0.25 -10.16 9.17 22.39 0.21 -9.95 16 12 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16 13 C -0.19 -5.28 5.25 -19.83 -0.10 -5.38 16 14 C 0.18 4.00 5.80 85.63 0.50 4.50 16 15 N -0.69 -15.24 5.54 -468.14 -2.59 -17.84 16 16 C 0.51 11.35 7.89 87.27 0.69 12.04 16 17 O -0.54 -13.36 16.48 -3.23 -0.05 -13.41 16 18 C 0.51 10.90 7.89 87.27 0.69 11.59 16 19 O -0.54 -14.69 16.22 -3.23 -0.05 -14.75 16 20 N -0.68 -10.23 5.22 -437.31 -2.28 -12.52 16 21 C 0.13 1.78 3.31 46.38 0.15 1.94 16 22 H 0.09 1.61 7.73 -2.39 -0.02 1.59 16 23 C -0.14 -1.03 6.57 31.78 0.21 -0.82 16 24 C 0.05 0.36 7.58 86.65 0.66 1.02 16 25 N -0.69 -8.05 7.39 -504.45 -3.73 -11.78 16 26 C 0.04 0.53 7.26 86.78 0.63 1.16 16 27 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 28 C -0.21 -8.32 9.99 22.39 0.22 -8.10 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 31 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.09 1.78 8.08 -2.39 -0.02 1.77 16 33 H 0.09 1.80 8.08 -2.39 -0.02 1.78 16 34 H 0.42 9.61 7.94 -92.71 -0.74 8.87 16 35 H 0.42 4.90 7.99 -92.71 -0.74 4.16 16 36 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.09 0.43 8.00 -2.39 -0.02 0.41 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.35 2.89 8.91 -89.69 -0.80 2.09 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 44 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -73.19 377.64 -2.27 -75.46 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -1.20 Total: 31.68 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 5.54 Total: -12.02 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -8.31 Total: -97.59 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.33 Total: -41.86 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -73.19 -2.27 -75.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331588156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.972 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.80 seconds