Wall clock time and date at job start Tue Mar 31 2020 17:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47004 * 269.99612 * 3 2 1 5 5 H 1.48503 * 109.47113 * 30.00188 * 3 2 1 6 6 H 1.48504 * 109.46825 * 149.99599 * 3 2 1 7 7 C 1.38692 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00258 * 0.02562 * 7 2 1 9 9 O 1.34815 * 119.99987 * 180.27622 * 7 2 1 10 10 C 1.35519 * 117.00143 * 174.59473 * 9 7 2 11 11 C 1.38843 * 120.15891 * 5.92599 * 10 9 7 12 12 C 1.38024 * 120.06960 * 179.97438 * 11 10 9 13 13 C 1.38579 * 120.40555 * 359.97438 * 12 11 10 14 14 C 1.37830 * 120.32131 * 0.02562 * 13 12 11 15 15 C 1.39668 * 119.91778 * 359.72340 * 14 13 12 16 16 C 1.47540 * 120.19980 * 180.25360 * 15 14 13 17 17 O 1.21592 * 119.99969 * 233.71895 * 16 15 14 18 18 N 1.34781 * 119.99812 * 53.71190 * 16 15 14 19 19 C 1.46923 * 120.62639 * 355.84839 * 18 16 15 20 20 C 1.53631 * 108.54004 * 126.37061 * 19 18 16 21 21 C 1.53038 * 109.24504 * 54.85057 * 20 19 18 22 22 N 1.46500 * 109.46084 * 178.49605 * 21 20 19 23 23 C 1.34783 * 119.99547 * 275.06861 * 22 21 20 24 24 N 1.34772 * 119.99588 * 180.02562 * 23 22 21 25 25 O 1.21591 * 120.00064 * 359.97438 * 23 22 21 26 26 C 1.53042 * 109.53507 * 298.51317 * 21 20 19 27 27 C 1.46918 * 120.62945 * 176.12660 * 18 16 15 28 28 H 0.97004 * 119.99844 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.96409 * 359.97280 * 11 10 9 30 30 H 1.07999 * 119.79738 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.83898 * 179.97438 * 13 12 11 32 32 H 1.07990 * 120.04114 * 179.97438 * 14 13 12 33 33 H 1.09001 * 109.58840 * 246.19289 * 19 18 16 34 34 H 1.08999 * 109.59349 * 6.62726 * 19 18 16 35 35 H 1.09007 * 109.62925 * 294.85991 * 20 19 18 36 36 H 1.09002 * 109.43176 * 174.72281 * 20 19 18 37 37 H 1.09000 * 109.45721 * 58.53337 * 21 20 19 38 38 H 0.96994 * 120.00631 * 95.06354 * 22 21 20 39 39 H 0.96997 * 120.00648 * 0.02562 * 24 23 22 40 40 H 0.97000 * 119.99886 * 179.97438 * 24 23 22 41 41 H 1.08997 * 109.49920 * 301.41201 * 26 21 20 42 42 H 1.09006 * 109.51850 * 181.33123 * 26 21 20 43 43 H 1.09004 * 109.58968 * 353.37159 * 27 18 16 44 44 H 1.08996 * 109.59288 * 113.66110 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 1.4687 -2.1365 0.0005 9 8 3.3568 -1.2011 0.0062 10 6 3.9716 -2.4034 0.1201 11 6 3.2245 -3.5735 0.1009 12 6 3.8527 -4.7971 0.2166 13 6 5.2300 -4.8684 0.3519 14 6 5.9876 -3.7172 0.3730 15 6 5.3665 -2.4721 0.2517 16 6 6.1720 -1.2362 0.2678 17 8 5.9043 -0.3462 1.0518 18 7 7.2048 -1.0937 -0.5864 19 6 7.5974 -2.1948 -1.4764 20 6 7.6257 -1.6698 -2.9199 21 6 8.5411 -0.4456 -2.9936 22 7 8.5999 0.0374 -4.3754 23 6 9.4739 -0.5093 -5.2437 24 7 9.5284 -0.0645 -6.5148 25 8 10.2138 -1.4030 -4.8800 26 6 7.9907 0.6601 -2.0899 27 6 7.9631 0.1635 -0.6410 28 1 -0.4850 0.8401 -0.0004 29 1 2.1508 -3.5262 -0.0046 30 1 3.2672 -5.7045 0.2015 31 1 5.7120 -5.8306 0.4421 32 1 7.0606 -3.7780 0.4790 33 1 8.5871 -2.5557 -1.1966 34 1 6.8739 -3.0060 -1.3953 35 1 6.6182 -1.3897 -3.2276 36 1 8.0054 -2.4484 -3.5816 37 1 9.5425 -0.7206 -2.6622 38 1 8.0100 0.7506 -4.6655 39 1 8.9390 0.6492 -6.8046 40 1 10.1576 -0.4577 -7.1396 41 1 6.9798 0.9182 -2.4054 42 1 8.6299 1.5403 -2.1608 43 1 7.4809 0.9089 -0.0085 44 1 8.9812 -0.0084 -0.2920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649714647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:13 Heat of formation + Delta-G solvation = -60.049129 kcal Electronic energy + Delta-G solvation = -29226.102217 eV Core-core repulsion = 25144.356035 eV Total energy + Delta-G solvation = -4081.746181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51555 -39.87947 -38.74783 -37.10916 -36.58638 -34.57423 -33.82519 -32.48617 -31.81624 -30.72747 -30.04741 -29.26948 -25.50284 -25.13496 -23.51386 -22.92062 -21.50150 -21.24715 -20.84838 -19.34976 -18.35282 -18.03150 -17.67378 -17.27572 -16.57279 -15.80520 -15.44412 -15.24458 -15.06361 -14.82954 -14.54875 -14.37429 -14.12390 -13.89962 -13.87471 -13.67717 -13.50167 -13.03583 -12.59172 -12.41786 -12.29134 -12.22641 -11.96756 -11.49181 -11.37009 -11.20321 -11.10306 -10.87307 -10.77830 -10.70153 -10.48572 -10.18815 -9.95722 -9.65719 -9.26148 -9.17050 -8.94273 -8.46086 -8.31633 -7.52154 -6.49690 -4.16291 1.67416 2.13613 2.65942 3.00261 3.14948 3.22541 3.25436 3.37478 3.53239 4.20942 4.25356 4.35419 4.54620 4.66333 4.73260 4.91968 5.03695 5.05053 5.09389 5.24010 5.36196 5.41751 5.51422 5.62368 5.63150 5.76015 5.82835 5.85124 5.94538 5.98643 6.05470 6.16499 6.30198 6.34737 6.49215 6.51317 6.65508 6.75509 6.84574 6.97625 7.13224 7.44746 7.62298 7.71374 7.73874 7.92291 8.39878 8.67348 8.85220 9.45393 10.56394 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.003994 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.753269 B = 7008.890928 C = 8209.024719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.071 3.929 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.192 6.192 10 C 0.198 3.802 11 C -0.222 4.222 12 C -0.056 4.056 13 C -0.213 4.213 14 C -0.048 4.048 15 C -0.214 4.214 16 C 0.578 3.422 17 O -0.525 6.525 18 N -0.617 5.617 19 C 0.106 3.894 20 C -0.146 4.146 21 C 0.165 3.835 22 N -0.740 5.740 23 C 0.705 3.295 24 N -0.870 5.870 25 O -0.595 6.595 26 C -0.143 4.143 27 C 0.119 3.881 28 H 0.281 0.719 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.396 0.604 39 H 0.396 0.604 40 H 0.413 0.587 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.600 -1.178 -9.813 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.095 6.095 10 C 0.142 3.858 11 C -0.241 4.241 12 C -0.075 4.075 13 C -0.232 4.232 14 C -0.066 4.066 15 C -0.219 4.219 16 C 0.368 3.632 17 O -0.400 6.400 18 N -0.353 5.353 19 C -0.017 4.017 20 C -0.185 4.185 21 C 0.060 3.940 22 N -0.395 5.395 23 C 0.403 3.597 24 N -0.438 5.438 25 O -0.473 6.473 26 C -0.182 4.182 27 C -0.005 4.005 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.230 0.770 39 H 0.224 0.776 40 H 0.245 0.755 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.863 -1.039 -8.905 19.099 hybrid contribution -0.313 1.126 -0.789 1.410 sum 16.551 0.087 -9.694 19.181 Atomic orbital electron populations 1.69627 1.05656 1.28785 1.46734 1.24449 0.94962 0.98971 0.94992 0.86328 0.81688 0.81198 0.79105 1.20072 1.20706 1.16478 1.20824 0.76657 0.96764 1.52561 0.87372 1.83596 1.22738 1.25438 1.77682 1.18903 0.89917 0.85869 0.91112 1.21265 1.01343 0.91581 1.09923 1.20960 0.94375 0.96791 0.95327 1.20571 0.94001 0.97324 1.11297 1.20750 0.98588 0.90730 0.96558 1.18731 0.91180 0.93136 1.18815 1.18255 0.78522 0.86869 0.79536 1.90775 1.68159 1.42615 1.38458 1.48045 1.32824 1.14676 1.39731 1.21982 1.01337 0.90281 0.88128 1.22428 1.00620 0.98181 0.97310 1.20851 1.00329 0.93657 0.79201 1.45253 1.41125 1.41643 1.11506 1.15993 0.80871 0.81760 0.81032 1.43015 1.45671 1.43791 1.11339 1.90969 1.45652 1.32951 1.77749 1.22233 1.02505 0.97923 0.95506 1.21410 0.96237 0.87194 0.95618 0.90864 0.84407 0.86782 0.86828 0.86354 0.91367 0.87936 0.90992 0.90266 0.89164 0.76998 0.77611 0.75489 0.90619 0.90207 0.88471 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.00 13.96 55.48 0.77 -24.22 16 2 C 0.07 2.01 5.49 -17.52 -0.10 1.91 16 3 Si 0.89 22.22 28.62 -169.99 -4.86 17.35 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.24 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.39 -11.03 9.95 30.90 0.31 -10.72 16 8 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 9 O -0.19 -5.15 7.77 -3.09 -0.02 -5.17 16 10 C 0.20 4.56 6.64 -38.59 -0.26 4.30 16 11 C -0.22 -4.60 9.16 -39.44 -0.36 -4.96 16 12 C -0.06 -0.94 10.03 -39.53 -0.40 -1.34 16 13 C -0.21 -3.26 10.03 -39.60 -0.40 -3.66 16 14 C -0.05 -0.77 7.41 -39.20 -0.29 -1.06 16 15 C -0.21 -4.29 4.92 -104.81 -0.52 -4.81 16 16 C 0.58 11.68 6.87 -12.47 -0.09 11.60 16 17 O -0.52 -12.74 16.16 1.40 0.02 -12.72 16 18 N -0.62 -9.51 2.97 -173.73 -0.52 -10.02 16 19 C 0.11 1.34 5.53 -3.48 -0.02 1.32 16 20 C -0.15 -1.73 5.67 -26.38 -0.15 -1.88 16 21 C 0.16 1.75 2.41 -67.89 -0.16 1.59 16 22 N -0.74 -6.72 5.08 -58.63 -0.30 -7.02 16 23 C 0.71 7.48 8.80 -86.92 -0.77 6.72 16 24 N -0.87 -5.46 8.88 27.64 0.25 -5.22 16 25 O -0.60 -8.96 16.84 5.29 0.09 -8.87 16 26 C -0.14 -1.50 5.55 -26.61 -0.15 -1.65 16 27 C 0.12 1.53 6.42 -3.71 -0.02 1.51 16 28 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.14 2.97 5.64 -52.49 -0.30 2.67 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.57 7.32 -52.49 -0.38 1.18 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.37 4.70 -51.93 -0.24 1.13 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 38 H 0.40 2.65 8.62 -40.82 -0.35 2.30 16 39 H 0.40 1.33 8.84 -40.82 -0.36 0.97 16 40 H 0.41 2.21 8.93 -40.82 -0.36 1.85 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.10 1.45 7.03 -51.93 -0.36 1.09 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -35.83 363.85 -8.01 -43.84 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.56 Total: 7.68 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -3.36 Total: -1.12 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.21 Total: -46.48 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.09 Total: -26.76 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.83 -8.01 -43.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649714647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.210 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds