Wall clock time and date at job start Tue Mar 31 2020 17:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47004 * 269.99612 * 3 2 1 5 5 H 1.48503 * 109.47113 * 30.00188 * 3 2 1 6 6 H 1.48504 * 109.46825 * 149.99599 * 3 2 1 7 7 C 1.38692 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00258 * 0.02562 * 7 2 1 9 9 O 1.34815 * 119.99987 * 180.27622 * 7 2 1 10 10 C 1.35519 * 117.00143 * 174.59473 * 9 7 2 11 11 C 1.38843 * 120.15891 * 5.92599 * 10 9 7 12 12 C 1.38024 * 120.06960 * 179.97438 * 11 10 9 13 13 C 1.38579 * 120.40555 * 359.97438 * 12 11 10 14 14 C 1.37830 * 120.32131 * 0.02562 * 13 12 11 15 15 C 1.39668 * 119.91778 * 359.72340 * 14 13 12 16 16 C 1.47540 * 120.19980 * 180.25360 * 15 14 13 17 17 O 1.21592 * 119.99969 * 233.71895 * 16 15 14 18 18 N 1.34781 * 119.99812 * 53.71190 * 16 15 14 19 19 C 1.46923 * 120.62639 * 355.84839 * 18 16 15 20 20 C 1.53631 * 108.54004 * 126.37061 * 19 18 16 21 21 C 1.53038 * 109.24504 * 54.85057 * 20 19 18 22 22 N 1.46500 * 109.46084 * 178.49605 * 21 20 19 23 23 C 1.34783 * 119.99547 * 275.06861 * 22 21 20 24 24 N 1.34772 * 119.99588 * 180.02562 * 23 22 21 25 25 O 1.21591 * 120.00064 * 359.97438 * 23 22 21 26 26 C 1.53042 * 109.53507 * 298.51317 * 21 20 19 27 27 C 1.46918 * 120.62945 * 176.12660 * 18 16 15 28 28 H 0.97004 * 119.99844 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.96409 * 359.97280 * 11 10 9 30 30 H 1.07999 * 119.79738 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.83898 * 179.97438 * 13 12 11 32 32 H 1.07990 * 120.04114 * 179.97438 * 14 13 12 33 33 H 1.09001 * 109.58840 * 246.19289 * 19 18 16 34 34 H 1.08999 * 109.59349 * 6.62726 * 19 18 16 35 35 H 1.09007 * 109.62925 * 294.85991 * 20 19 18 36 36 H 1.09002 * 109.43176 * 174.72281 * 20 19 18 37 37 H 1.09000 * 109.45721 * 58.53337 * 21 20 19 38 38 H 0.96994 * 120.00631 * 95.06354 * 22 21 20 39 39 H 0.96997 * 120.00648 * 0.02562 * 24 23 22 40 40 H 0.97000 * 119.99886 * 179.97438 * 24 23 22 41 41 H 1.08997 * 109.49920 * 301.41201 * 26 21 20 42 42 H 1.09006 * 109.51850 * 181.33123 * 26 21 20 43 43 H 1.09004 * 109.58968 * 353.37159 * 27 18 16 44 44 H 1.08996 * 109.59288 * 113.66110 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 1.4687 -2.1365 0.0005 9 8 3.3568 -1.2011 0.0062 10 6 3.9716 -2.4034 0.1201 11 6 3.2245 -3.5735 0.1009 12 6 3.8527 -4.7971 0.2166 13 6 5.2300 -4.8684 0.3519 14 6 5.9876 -3.7172 0.3730 15 6 5.3665 -2.4721 0.2517 16 6 6.1720 -1.2362 0.2678 17 8 5.9043 -0.3462 1.0518 18 7 7.2048 -1.0937 -0.5864 19 6 7.5974 -2.1948 -1.4764 20 6 7.6257 -1.6698 -2.9199 21 6 8.5411 -0.4456 -2.9936 22 7 8.5999 0.0374 -4.3754 23 6 9.4739 -0.5093 -5.2437 24 7 9.5284 -0.0645 -6.5148 25 8 10.2138 -1.4030 -4.8800 26 6 7.9907 0.6601 -2.0899 27 6 7.9631 0.1635 -0.6410 28 1 -0.4850 0.8401 -0.0004 29 1 2.1508 -3.5262 -0.0046 30 1 3.2672 -5.7045 0.2015 31 1 5.7120 -5.8306 0.4421 32 1 7.0606 -3.7780 0.4790 33 1 8.5871 -2.5557 -1.1966 34 1 6.8739 -3.0060 -1.3953 35 1 6.6182 -1.3897 -3.2276 36 1 8.0054 -2.4484 -3.5816 37 1 9.5425 -0.7206 -2.6622 38 1 8.0100 0.7506 -4.6655 39 1 8.9390 0.6492 -6.8046 40 1 10.1576 -0.4577 -7.1396 41 1 6.9798 0.9182 -2.4054 42 1 8.6299 1.5403 -2.1608 43 1 7.4809 0.9089 -0.0085 44 1 8.9812 -0.0084 -0.2920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649714647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:08 Heat of formation + Delta-G solvation = -88.523160 kcal Electronic energy + Delta-G solvation = -29227.336943 eV Core-core repulsion = 25144.356035 eV Total energy + Delta-G solvation = -4082.980908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -41.76554 -40.99993 -40.20651 -38.39224 -38.18437 -35.64217 -34.60699 -34.52553 -32.99886 -31.77503 -31.29251 -30.84161 -27.37642 -26.38230 -24.58494 -24.21481 -23.03935 -22.27240 -21.82650 -20.63212 -19.90065 -19.20246 -18.93164 -18.42391 -17.91094 -17.20987 -16.72471 -16.42313 -16.26660 -15.97013 -15.85387 -15.64716 -15.53038 -15.41769 -15.26818 -14.86576 -14.74093 -14.43544 -14.25504 -14.07080 -13.85228 -13.39134 -13.12455 -12.97284 -12.81671 -12.62517 -12.38131 -12.28974 -12.10406 -12.06270 -11.67996 -11.53715 -11.43161 -10.97681 -10.81279 -10.68281 -10.02448 -9.82586 -9.66497 -9.16146 -8.57381 -6.27848 0.18369 0.61834 1.21257 1.26292 1.51357 1.67432 1.92267 2.07895 2.19161 2.24452 2.71253 2.92017 3.12443 3.50093 3.64916 3.73437 3.82527 4.01748 4.05822 4.07612 4.23276 4.27809 4.38860 4.49746 4.55037 4.58862 4.71013 4.76508 4.81061 4.83657 4.91526 5.01876 5.07249 5.21831 5.30666 5.47336 5.50829 5.57256 5.63364 5.68952 5.83659 5.90516 6.06225 6.14395 6.33689 6.78290 7.09201 7.19434 7.53820 7.67237 8.53527 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.003994 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.753269 B = 7008.890928 C = 8209.024719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.274 1.274 7 C -0.399 4.399 8 H 0.091 0.909 9 O -0.232 6.232 10 C 0.157 3.843 11 C -0.242 4.242 12 C -0.049 4.049 13 C -0.180 4.180 14 C -0.040 4.040 15 C -0.219 4.219 16 C 0.569 3.431 17 O -0.580 6.580 18 N -0.606 5.606 19 C 0.103 3.897 20 C -0.139 4.139 21 C 0.172 3.828 22 N -0.732 5.732 23 C 0.701 3.299 24 N -0.851 5.851 25 O -0.641 6.641 26 C -0.131 4.131 27 C 0.111 3.889 28 H 0.286 0.714 29 H 0.116 0.884 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.409 0.591 39 H 0.413 0.587 40 H 0.420 0.580 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.019 -2.859 -10.968 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.198 1.198 7 C -0.475 4.475 8 H 0.109 0.891 9 O -0.137 6.137 10 C 0.106 3.894 11 C -0.261 4.261 12 C -0.068 4.068 13 C -0.199 4.199 14 C -0.058 4.058 15 C -0.223 4.223 16 C 0.359 3.641 17 O -0.459 6.459 18 N -0.339 5.339 19 C -0.019 4.019 20 C -0.179 4.179 21 C 0.066 3.934 22 N -0.387 5.387 23 C 0.399 3.601 24 N -0.420 5.420 25 O -0.523 6.523 26 C -0.170 4.170 27 C -0.011 4.011 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.169 0.831 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.245 0.755 39 H 0.243 0.757 40 H 0.253 0.747 41 H 0.079 0.921 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 20.315 -2.727 -10.147 22.872 hybrid contribution -1.073 1.300 -0.463 1.748 sum 19.242 -1.427 -10.610 22.020 Atomic orbital electron populations 1.69683 1.06441 1.29529 1.49653 1.25058 0.95679 1.01402 0.95479 0.85489 0.79020 0.78726 0.79372 1.18655 1.18972 1.19849 1.20793 0.77874 0.96318 1.52503 0.89136 1.83563 1.21484 1.27442 1.81255 1.19541 0.91468 0.85680 0.92743 1.21315 1.00552 0.92846 1.11368 1.21406 0.95723 0.96282 0.93340 1.21215 0.93096 0.99138 1.06415 1.21253 1.00678 0.89239 0.94631 1.19105 0.90135 0.95048 1.18053 1.18437 0.79383 0.86406 0.79861 1.90747 1.69927 1.44175 1.41101 1.48096 1.31283 1.16225 1.38334 1.22203 1.02572 0.89164 0.87942 1.22346 0.99943 0.98894 0.96724 1.20680 0.99712 0.93002 0.80017 1.45072 1.41069 1.41756 1.10840 1.16181 0.80527 0.81394 0.82031 1.42831 1.45586 1.43616 1.09921 1.90937 1.47467 1.35062 1.78797 1.22129 1.02303 0.98871 0.93700 1.21642 0.96885 0.85639 0.96941 0.90460 0.86619 0.83131 0.81647 0.82388 0.88215 0.88527 0.92752 0.90069 0.89250 0.75477 0.75681 0.74702 0.92142 0.87441 0.90998 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.05 13.96 21.62 0.30 -54.75 16 2 C 0.02 1.41 5.49 84.85 0.47 1.88 16 3 Si 0.95 48.57 28.62 68.60 1.96 50.53 16 4 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -15.29 7.11 99.48 0.71 -14.59 16 7 C -0.40 -23.97 9.95 67.93 0.68 -23.30 16 8 H 0.09 5.54 5.44 -2.91 -0.02 5.52 16 9 O -0.23 -13.21 7.77 -16.34 -0.13 -13.34 16 10 C 0.16 7.52 6.64 22.91 0.15 7.67 16 11 C -0.24 -10.19 9.16 22.36 0.20 -9.99 16 12 C -0.05 -1.51 10.03 22.30 0.22 -1.29 16 13 C -0.18 -4.57 10.03 22.25 0.22 -4.35 16 14 C -0.04 -1.13 7.41 22.52 0.17 -0.97 16 15 C -0.22 -8.69 4.92 -19.98 -0.10 -8.79 16 16 C 0.57 23.20 6.87 86.70 0.60 23.79 16 17 O -0.58 -29.37 16.16 -0.29 0.00 -29.38 16 18 N -0.61 -17.97 2.97 -821.82 -2.44 -20.40 16 19 C 0.10 2.33 5.53 86.51 0.48 2.80 16 20 C -0.14 -3.04 5.67 30.82 0.17 -2.87 16 21 C 0.17 3.25 2.41 45.02 0.11 3.36 16 22 N -0.73 -11.59 5.08 -457.67 -2.33 -13.91 16 23 C 0.70 13.29 8.80 179.05 1.58 14.87 16 24 N -0.85 -8.53 8.88 -184.74 -1.64 -10.17 16 25 O -0.64 -18.09 16.84 -4.00 -0.07 -18.16 16 26 C -0.13 -2.52 5.55 30.67 0.17 -2.35 16 27 C 0.11 2.74 6.42 86.36 0.55 3.30 16 28 H 0.29 15.83 8.31 -92.71 -0.77 15.06 16 29 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 30 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.16 3.30 7.32 -2.92 -0.02 3.28 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.10 2.29 4.70 -2.39 -0.01 2.28 16 35 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 1.80 7.58 -2.39 -0.02 1.79 16 38 H 0.41 4.47 8.62 -92.71 -0.80 3.67 16 39 H 0.41 1.58 8.84 -92.71 -0.82 0.76 16 40 H 0.42 3.49 8.93 -92.71 -0.83 2.66 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.07 2.19 7.03 -2.38 -0.02 2.17 16 44 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -85.93 363.85 -0.02 -85.95 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -1.36 Total: 19.86 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.67 Total: 3.76 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -6.10 Total: -99.23 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -0.20 Total: -60.87 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.96 Total: 50.53 kcal Total: -85.93 -0.02 -85.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649714647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.570 kcal (2) G-P(sol) polarization free energy of solvation -85.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds